RNA–Protein interactions for RNA: ENST00000489961.1

VPS13D-210, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 443 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-210ENST00000489961 ARHGEF11O15085 1522 aa17.96■□□□□ 0.47
VPS13D-210ENST00000489961 RIMBP3CA6NJZ7 1639 aa17.95■□□□□ 0.46
VPS13D-210ENST00000489961 RIMBP3BA6NNM3 1639 aa17.95■□□□□ 0.46
VPS13D-210ENST00000489961 SHROOM2Q13796 1616 aa17.95■□□□□ 0.46
VPS13D-210ENST00000489961 RIMBP3Q9UFD9 1639 aa17.95■□□□□ 0.46
VPS13D-210ENST00000489961 CTTNBP2Q8WZ74 1663 aa17.94■□□□□ 0.46
VPS13D-210ENST00000489961 IQGAP2Q13576 1575 aa17.92■□□□□ 0.46
VPS13D-210ENST00000489961 JPH4Q96JJ6 628 aa17.92■□□□□ 0.46
VPS13D-210ENST00000489961 PRG4Q92954 1404 aaPredicted RBP17.87■□□□□ 0.45
VPS13D-210ENST00000489961 GOLGA3Q08378 1498 aa17.86■□□□□ 0.45
VPS13D-210ENST00000489961 ERCC6L2Q5T890 1561 aa17.84■□□□□ 0.45
VPS13D-210ENST00000489961 UGGT2Q9NYU1 1516 aa17.82■□□□□ 0.44
VPS13D-210ENST00000489961 ARAP1Q96P48 1450 aa17.82■□□□□ 0.44
VPS13D-210ENST00000489961 EHMT2Q96KQ7 1210 aa17.81■□□□□ 0.44
VPS13D-210ENST00000489961 CARMIL2Q6F5E8 1435 aa17.81■□□□□ 0.44
VPS13D-210ENST00000489961 UBTFP17480 764 aaKnown RBP17.79■□□□□ 0.44
VPS13D-210ENST00000489961 CYB5RLQ6IPT4 315 aa17.77■□□□□ 0.44
VPS13D-210ENST00000489961 DISP1Q96F81 1524 aa17.75■□□□□ 0.43
VPS13D-210ENST00000489961 KIAA0556O60303 1618 aa17.74■□□□□ 0.43
VPS13D-210ENST00000489961 TNIKQ9UKE5 1360 aa17.71■□□□□ 0.43
VPS13D-210ENST00000489961 PTPRGP23470 1445 aa17.68■□□□□ 0.42
VPS13D-210ENST00000489961 RANGAP1P46060 587 aaPredicted RBP17.68■□□□□ 0.42
VPS13D-210ENST00000489961 SAMD9Q5K651 1589 aa17.68■□□□□ 0.42
VPS13D-210ENST00000489961 EFCAB5A4FU69 1503 aa17.66■□□□□ 0.42
VPS13D-210ENST00000489961 TTBK1Q5TCY1 1321 aaPredicted RBP17.66■□□□□ 0.42
VPS13D-210ENST00000489961 P3H3Q8IVL6 736 aa17.62■□□□□ 0.41
VPS13D-210ENST00000489961 ADCY10Q96PN6 1610 aa17.58■□□□□ 0.4
VPS13D-210ENST00000489961 FHOD3Q2V2M9 1422 aa17.57■□□□□ 0.4
VPS13D-210ENST00000489961 UACAQ9BZF9 1416 aa17.57■□□□□ 0.4
VPS13D-210ENST00000489961 LOC105371045A0A1W2PR82 267 aa17.57■□□□□ 0.4
VPS13D-210ENST00000489961 ARHGAP35Q9NRY4 1499 aa17.56■□□□□ 0.4
VPS13D-210ENST00000489961 UHRF1BP1LA0JNW5 1464 aa17.55■□□□□ 0.4
VPS13D-210ENST00000489961 ABCC2Q92887 1545 aa17.54■□□□□ 0.4
VPS13D-210ENST00000489961 PLB1Q6P1J6 1458 aa17.53■□□□□ 0.4
VPS13D-210ENST00000489961 NPM1P06748 294 aaKnown RBP eCLIP17.53■□□□□ 0.4
VPS13D-210ENST00000489961 CLIP1P30622 1438 aa17.53■□□□□ 0.4
VPS13D-210ENST00000489961 ABCA8O94911 1581 aa17.53■□□□□ 0.4
VPS13D-210ENST00000489961 CEP162Q5TB80 1403 aa17.49■□□□□ 0.39
VPS13D-210ENST00000489961 RAPGEF6Q8TEU7 1601 aa17.49■□□□□ 0.39
VPS13D-210ENST00000489961 FMN1Q68DA7 1419 aa17.48■□□□□ 0.39
VPS13D-210ENST00000489961 KDM5BQ9UGL1 1544 aa17.46■□□□□ 0.39
VPS13D-210ENST00000489961 ZCCHC11Q5TAX3 1644 aaKnown RBP17.45■□□□□ 0.38
VPS13D-210ENST00000489961 MAPKBP1O60336 1514 aa17.44■□□□□ 0.38
VPS13D-210ENST00000489961 HECW1Q76N89 1606 aa17.39■□□□□ 0.38
VPS13D-210ENST00000489961 NUP153P49790 1475 aaKnown RBP17.39■□□□□ 0.37
VPS13D-210ENST00000489961 TRHP20396 242 aaPredicted RBP17.38■□□□□ 0.37
VPS13D-210ENST00000489961 ASXL2Q76L83 1435 aa17.38■□□□□ 0.37
VPS13D-210ENST00000489961 ATP10BO94823 1461 aa17.37■□□□□ 0.37
VPS13D-210ENST00000489961 ARID3CA6NKF2 412 aa17.37■□□□□ 0.37
VPS13D-210ENST00000489961 ATP1B4Q9UN42 357 aaPredicted RBP17.37■□□□□ 0.37
VPS13D-210ENST00000489961 PCF11O94913 1555 aaKnown RBP17.36■□□□□ 0.37
VPS13D-210ENST00000489961 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.35■□□□□ 0.37
VPS13D-210ENST00000489961 HNRNPUL2Q1KMD3 747 aaKnown RBP17.35■□□□□ 0.37
VPS13D-210ENST00000489961 CASKIN1Q8WXD9 1431 aa17.35■□□□□ 0.37
VPS13D-210ENST00000489961 FYCO1Q9BQS8 1478 aa17.33■□□□□ 0.37
VPS13D-210ENST00000489961 ABCC10Q5T3U5 1492 aa17.32■□□□□ 0.36
VPS13D-210ENST00000489961 WDR7Q9Y4E6 1490 aa17.32■□□□□ 0.36
VPS13D-210ENST00000489961 DIP2BQ9P265 1576 aa17.32■□□□□ 0.36
VPS13D-210ENST00000489961 EPRSP07814 1512 aaKnown RBP17.31■□□□□ 0.36
VPS13D-210ENST00000489961 KIF13AQ9H1H9 1805 aa17.31■□□□□ 0.36
VPS13D-210ENST00000489961 CDK13Q14004 1512 aaKnown RBP17.3■□□□□ 0.36
VPS13D-210ENST00000489961 LRRIQ1Q96JM4 1722 aa17.29■□□□□ 0.36
VPS13D-210ENST00000489961 CCDC18Q5T9S5 1454 aa17.29■□□□□ 0.36
VPS13D-210ENST00000489961 FAM69CQ0P6D2 419 aa17.28■□□□□ 0.36
VPS13D-210ENST00000489961 VPS8Q8N3P4 1428 aa17.28■□□□□ 0.36
VPS13D-210ENST00000489961 PLEKHD1A6NEE1 506 aa17.27■□□□□ 0.36
VPS13D-210ENST00000489961 CDK11AQ9UQ88 783 aaPredicted RBP17.26■□□□□ 0.35
VPS13D-210ENST00000489961 GLI2P10070 1586 aa17.26■□□□□ 0.35
VPS13D-210ENST00000489961 KCNH8Q96L42 1107 aa17.24■□□□□ 0.35
VPS13D-210ENST00000489961 CFAP43Q8NDM7 1665 aa17.2■□□□□ 0.34
VPS13D-210ENST00000489961 MAP3K4Q9Y6R4 1608 aa17.19■□□□□ 0.34
VPS13D-210ENST00000489961 TSPOAP1O95153 1857 aa17.18■□□□□ 0.34
VPS13D-210ENST00000489961 TROQ12816 1431 aaPredicted RBP17.18■□□□□ 0.34
VPS13D-210ENST00000489961 ABCA9Q8IUA7 1624 aa17.17■□□□□ 0.34
VPS13D-210ENST00000489961 KIF14Q15058 1648 aa17.15■□□□□ 0.34
VPS13D-210ENST00000489961 TIAM1Q13009 1591 aa17.14■□□□□ 0.33
VPS13D-210ENST00000489961 CD109Q6YHK3 1445 aa17.13■□□□□ 0.33
VPS13D-210ENST00000489961 MAGI3Q5TCQ9 1506 aa17.13■□□□□ 0.33
VPS13D-210ENST00000489961 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.12■□□□□ 0.33
VPS13D-210ENST00000489961 PPRC1Q5VV67 1664 aaKnown RBP17.12■□□□□ 0.33
VPS13D-210ENST00000489961 MTUS2Q5JR59 1369 aa17.12■□□□□ 0.33
VPS13D-210ENST00000489961 MAP3K1Q13233 1512 aa17.11■□□□□ 0.33
VPS13D-210ENST00000489961 APLP2Q06481 763 aa17.11■□□□□ 0.33
VPS13D-210ENST00000489961 TEX14Q8IWB6 1497 aa17.11■□□□□ 0.33
VPS13D-210ENST00000489961 TTC37Q6PGP7 1564 aa17.11■□□□□ 0.33
VPS13D-210ENST00000489961 EHBP1L1Q8N3D4 1523 aa17.1■□□□□ 0.33
VPS13D-210ENST00000489961 MYO5CQ9NQX4 1742 aa17.07■□□□□ 0.32
VPS13D-210ENST00000489961 LRRC9Q6ZRR7 1453 aa17.05■□□□□ 0.32
VPS13D-210ENST00000489961 SUPT6HQ7KZ85 1726 aaKnown RBP17.04■□□□□ 0.32
VPS13D-210ENST00000489961 PLCH2O75038 1416 aa17.03■□□□□ 0.32
VPS13D-210ENST00000489961 CFAP74Q9C0B2 1584 aa17.02■□□□□ 0.32
VPS13D-210ENST00000489961 ARAP3Q8WWN8 1544 aa17.01■□□□□ 0.31
VPS13D-210ENST00000489961 KDM6BO15054 1643 aa17.01■□□□□ 0.31
VPS13D-210ENST00000489961 PHLDB1Q86UU1 1377 aa17.01■□□□□ 0.31
VPS13D-210ENST00000489961 NEO1Q92859 1461 aa17■□□□□ 0.31
VPS13D-210ENST00000489961 PREX2Q70Z35 1606 aa17■□□□□ 0.31
VPS13D-210ENST00000489961 CDC42BPAQ5VT25 1732 aa17■□□□□ 0.31
VPS13D-210ENST00000489961 FANCAO15360 1455 aa16.99■□□□□ 0.31
VPS13D-210ENST00000489961 KANK4Q5T7N3 995 aaPredicted RBP16.99■□□□□ 0.31
VPS13D-210ENST00000489961 ARHGAP5Q13017 1502 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 98.8 ms