RNA–Protein interactions for RNA: ENST00000489554.1

SCAMP4-208, Transcript of secretory carrier membrane protein 4, humanhuman

TSL 3

Gene SCAMP4, Length 573 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAMP4-208ENST00000489554 CARMIL1Q5VZK9 1371 aa17.96■□□□□ 0.47
SCAMP4-208ENST00000489554 PRG4Q92954 1404 aaPredicted RBP17.96■□□□□ 0.47
SCAMP4-208ENST00000489554 KIAA0586Q9BVV6 1533 aa17.94■□□□□ 0.46
SCAMP4-208ENST00000489554 TRHP20396 242 aaPredicted RBP17.92■□□□□ 0.46
SCAMP4-208ENST00000489554 CHIC1Q5VXU3 224 aa17.84■□□□□ 0.45
SCAMP4-208ENST00000489554 RAPGEF2Q9Y4G8 1499 aa17.83■□□□□ 0.45
SCAMP4-208ENST00000489554 IQGAP2Q13576 1575 aa17.79■□□□□ 0.44
SCAMP4-208ENST00000489554 CARMIL2Q6F5E8 1435 aa17.77■□□□□ 0.44
SCAMP4-208ENST00000489554 PTPRGP23470 1445 aa17.72■□□□□ 0.43
SCAMP4-208ENST00000489554 PRXQ9BXM0 1461 aa17.72■□□□□ 0.43
SCAMP4-208ENST00000489554 TNIKQ9UKE5 1360 aa17.72■□□□□ 0.43
SCAMP4-208ENST00000489554 NPM1P06748 294 aaKnown RBP eCLIP17.72■□□□□ 0.43
SCAMP4-208ENST00000489554 UGGT2Q9NYU1 1516 aa17.69■□□□□ 0.42
SCAMP4-208ENST00000489554 ADCY10Q96PN6 1610 aa17.69■□□□□ 0.42
SCAMP4-208ENST00000489554 DISP1Q96F81 1524 aa17.67■□□□□ 0.42
SCAMP4-208ENST00000489554 MAPKBP1O60336 1514 aa17.66■□□□□ 0.42
SCAMP4-208ENST00000489554 EEA1Q15075 1411 aa17.65■□□□□ 0.42
SCAMP4-208ENST00000489554 CSRNP3Q8WYN3 585 aa17.65■□□□□ 0.42
SCAMP4-208ENST00000489554 CTTNBP2Q8WZ74 1663 aa17.63■□□□□ 0.41
SCAMP4-208ENST00000489554 TTBK1Q5TCY1 1321 aaPredicted RBP17.63■□□□□ 0.41
SCAMP4-208ENST00000489554 KIAA0556O60303 1618 aa17.61■□□□□ 0.41
SCAMP4-208ENST00000489554 UACAQ9BZF9 1416 aa17.6■□□□□ 0.41
SCAMP4-208ENST00000489554 UHRF1BP1LA0JNW5 1464 aa17.6■□□□□ 0.41
SCAMP4-208ENST00000489554 GOLGA3Q08378 1498 aa17.6■□□□□ 0.41
SCAMP4-208ENST00000489554 ABCC10Q5T3U5 1492 aa17.6■□□□□ 0.41
SCAMP4-208ENST00000489554 ABCC2Q92887 1545 aa17.59■□□□□ 0.41
SCAMP4-208ENST00000489554 KIF13AQ9H1H9 1805 aa17.56■□□□□ 0.4
SCAMP4-208ENST00000489554 FAM69CQ0P6D2 419 aa17.56■□□□□ 0.4
SCAMP4-208ENST00000489554 DIP2BQ9P265 1576 aa17.54■□□□□ 0.4
SCAMP4-208ENST00000489554 PLB1Q6P1J6 1458 aa17.51■□□□□ 0.39
SCAMP4-208ENST00000489554 KDM5BQ9UGL1 1544 aa17.51■□□□□ 0.39
SCAMP4-208ENST00000489554 ASXL2Q76L83 1435 aa17.49■□□□□ 0.39
SCAMP4-208ENST00000489554 FAM9AQ8IZU1 332 aaPredicted RBP17.49■□□□□ 0.39
SCAMP4-208ENST00000489554 KIF21BO75037 1637 aa17.45■□□□□ 0.38
SCAMP4-208ENST00000489554 ABCA8O94911 1581 aa17.45■□□□□ 0.38
SCAMP4-208ENST00000489554 ZCCHC11Q5TAX3 1644 aaKnown RBP17.43■□□□□ 0.38
SCAMP4-208ENST00000489554 GLI2P10070 1586 aa17.42■□□□□ 0.38
SCAMP4-208ENST00000489554 SAMD9Q5K651 1589 aa17.42■□□□□ 0.38
SCAMP4-208ENST00000489554 P3H3Q8IVL6 736 aa17.4■□□□□ 0.38
SCAMP4-208ENST00000489554 EPRSP07814 1512 aaKnown RBP17.39■□□□□ 0.37
SCAMP4-208ENST00000489554 WDR7Q9Y4E6 1490 aa17.37■□□□□ 0.37
SCAMP4-208ENST00000489554 TSPOAP1O95153 1857 aa17.34■□□□□ 0.37
SCAMP4-208ENST00000489554 EFCAB5A4FU69 1503 aa17.33■□□□□ 0.37
SCAMP4-208ENST00000489554 RANGAP1P46060 587 aaPredicted RBP17.33■□□□□ 0.36
SCAMP4-208ENST00000489554 KDM6BO15054 1643 aa17.32■□□□□ 0.36
SCAMP4-208ENST00000489554 UBTFP17480 764 aaKnown RBP17.31■□□□□ 0.36
SCAMP4-208ENST00000489554 MAP3K4Q9Y6R4 1608 aa17.31■□□□□ 0.36
SCAMP4-208ENST00000489554 FHOD3Q2V2M9 1422 aa17.3■□□□□ 0.36
SCAMP4-208ENST00000489554 RAPGEF6Q8TEU7 1601 aa17.3■□□□□ 0.36
SCAMP4-208ENST00000489554 ATP10BO94823 1461 aa17.3■□□□□ 0.36
SCAMP4-208ENST00000489554 TEX14Q8IWB6 1497 aa17.3■□□□□ 0.36
SCAMP4-208ENST00000489554 PPRC1Q5VV67 1664 aaKnown RBP17.29■□□□□ 0.36
SCAMP4-208ENST00000489554 ARID3CA6NKF2 412 aa17.26■□□□□ 0.35
SCAMP4-208ENST00000489554 EHMT2Q96KQ7 1210 aa17.26■□□□□ 0.35
SCAMP4-208ENST00000489554 KCNH8Q96L42 1107 aa17.26■□□□□ 0.35
SCAMP4-208ENST00000489554 NUP153P49790 1475 aaKnown RBP17.24■□□□□ 0.35
SCAMP4-208ENST00000489554 CD109Q6YHK3 1445 aa17.24■□□□□ 0.35
SCAMP4-208ENST00000489554 CFAP43Q8NDM7 1665 aa17.23■□□□□ 0.35
SCAMP4-208ENST00000489554 MAGI3Q5TCQ9 1506 aa17.23■□□□□ 0.35
SCAMP4-208ENST00000489554 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.22■□□□□ 0.35
SCAMP4-208ENST00000489554 HNRNPUL2Q1KMD3 747 aaKnown RBP17.22■□□□□ 0.35
SCAMP4-208ENST00000489554 AEBP2Q6ZN18 517 aaPredicted RBP17.2■□□□□ 0.34
SCAMP4-208ENST00000489554 FMN1Q68DA7 1419 aa17.19■□□□□ 0.34
SCAMP4-208ENST00000489554 ARHGAP35Q9NRY4 1499 aa17.18■□□□□ 0.34
SCAMP4-208ENST00000489554 COL17A1Q9UMD9 1497 aaPredicted RBP17.18■□□□□ 0.34
SCAMP4-208ENST00000489554 ABCA9Q8IUA7 1624 aa17.15■□□□□ 0.34
SCAMP4-208ENST00000489554 PLEKHD1A6NEE1 506 aa17.15■□□□□ 0.34
SCAMP4-208ENST00000489554 PHLDB1Q86UU1 1377 aa17.12■□□□□ 0.33
SCAMP4-208ENST00000489554 HECW1Q76N89 1606 aa17.1■□□□□ 0.33
SCAMP4-208ENST00000489554 LOC105371045A0A1W2PR82 267 aa17.09■□□□□ 0.33
SCAMP4-208ENST00000489554 CDK13Q14004 1512 aaKnown RBP17.08■□□□□ 0.32
SCAMP4-208ENST00000489554 ARAP3Q8WWN8 1544 aa17.08■□□□□ 0.32
SCAMP4-208ENST00000489554 ATP1B4Q9UN42 357 aaPredicted RBP17.08■□□□□ 0.32
SCAMP4-208ENST00000489554 NEO1Q92859 1461 aa17.07■□□□□ 0.32
SCAMP4-208ENST00000489554 CDK11AQ9UQ88 783 aaPredicted RBP17.06■□□□□ 0.32
SCAMP4-208ENST00000489554 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.03■□□□□ 0.326e-6■■■■■ 38.2
SCAMP4-208ENST00000489554 KDM4FA0A1W2PPD8 638 aa17.03■□□□□ 0.32
SCAMP4-208ENST00000489554 CLIP1P30622 1438 aa17.02■□□□□ 0.31
SCAMP4-208ENST00000489554 CASKIN1Q8WXD9 1431 aa17.01■□□□□ 0.31
SCAMP4-208ENST00000489554 TTC37Q6PGP7 1564 aa16.99■□□□□ 0.31
SCAMP4-208ENST00000489554 FANCAO15360 1455 aa16.99■□□□□ 0.31
SCAMP4-208ENST00000489554 CFAP74Q9C0B2 1584 aa16.98■□□□□ 0.31
SCAMP4-208ENST00000489554 CCDC18Q5T9S5 1454 aa16.98■□□□□ 0.31
SCAMP4-208ENST00000489554 PCF11O94913 1555 aaKnown RBP16.98■□□□□ 0.31
SCAMP4-208ENST00000489554 TROQ12816 1431 aaPredicted RBP16.97■□□□□ 0.31
SCAMP4-208ENST00000489554 ADGRL1O94910 1474 aa16.97■□□□□ 0.31
SCAMP4-208ENST00000489554 AKNAQ7Z591 1439 aa16.96■□□□□ 0.31
SCAMP4-208ENST00000489554 RAPGEF3O95398 923 aa16.96■□□□□ 0.31
SCAMP4-208ENST00000489554 FYCO1Q9BQS8 1478 aa16.96■□□□□ 0.31
SCAMP4-208ENST00000489554 PLCH2O75038 1416 aa16.96■□□□□ 0.3
SCAMP4-208ENST00000489554 DENND4BO75064 1496 aaPredicted RBP16.94■□□□□ 0.3
SCAMP4-208ENST00000489554 KIF14Q15058 1648 aa16.94■□□□□ 0.3
SCAMP4-208ENST00000489554 FRMPD1Q5SYB0 1578 aa16.92■□□□□ 0.3
SCAMP4-208ENST00000489554 LRRIQ1Q96JM4 1722 aa16.92■□□□□ 0.3
SCAMP4-208ENST00000489554 EFCAB2Q5VUJ9 269 aa16.9■□□□□ 0.3
SCAMP4-208ENST00000489554 CEP162Q5TB80 1403 aa16.88■□□□□ 0.29
SCAMP4-208ENST00000489554 MYO5CQ9NQX4 1742 aa16.88■□□□□ 0.29
SCAMP4-208ENST00000489554 RICTORQ6R327 1708 aa16.87■□□□□ 0.29
SCAMP4-208ENST00000489554 SCAPERQ9BY12 1400 aa16.87■□□□□ 0.29
SCAMP4-208ENST00000489554 ZMYM4Q5VZL5 1548 aa16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 73.1 ms