RNA–Protein interactions for RNA: ENST00000488727.5

CCM2-216, Transcript of CCM2 scaffold protein, humanhuman

TSL 5

Gene CCM2, Length 1,719 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-216ENST00000488727 CTTNBP2Q8WZ74 1663 aa31.7■■■□□ 2.66
CCM2-216ENST00000488727 SHROOM2Q13796 1616 aa31.65■■■□□ 2.66
CCM2-216ENST00000488727 GOLGA3Q08378 1498 aa31.65■■■□□ 2.66
CCM2-216ENST00000488727 EHMT2Q96KQ7 1210 aa31.65■■■□□ 2.66
CCM2-216ENST00000488727 IQGAP2Q13576 1575 aa31.64■■■□□ 2.66
CCM2-216ENST00000488727 JPH4Q96JJ6 628 aa31.56■■■□□ 2.64
CCM2-216ENST00000488727 ARHGEF11O15085 1522 aa31.55■■■□□ 2.64
CCM2-216ENST00000488727 RIMBP3CA6NJZ7 1639 aa31.53■■■□□ 2.64
CCM2-216ENST00000488727 RIMBP3BA6NNM3 1639 aa31.53■■■□□ 2.64
CCM2-216ENST00000488727 RIMBP3Q9UFD9 1639 aa31.53■■■□□ 2.64
CCM2-216ENST00000488727 ERCC6L2Q5T890 1561 aa31.52■■■□□ 2.64
CCM2-216ENST00000488727 UBTFP17480 764 aaKnown RBP31.49■■■□□ 2.63
CCM2-216ENST00000488727 PRG4Q92954 1404 aaPredicted RBP31.49■■■□□ 2.63
CCM2-216ENST00000488727 UGGT2Q9NYU1 1516 aa31.47■■■□□ 2.63
CCM2-216ENST00000488727 DISP1Q96F81 1524 aa31.4■■■□□ 2.62
CCM2-216ENST00000488727 LOC105371045A0A1W2PR82 267 aa31.37■■■□□ 2.61
CCM2-216ENST00000488727 KIAA0556O60303 1618 aa31.35■■■□□ 2.61
CCM2-216ENST00000488727 ARAP1Q96P48 1450 aa31.34■■■□□ 2.61
CCM2-216ENST00000488727 CARMIL2Q6F5E8 1435 aa31.33■■■□□ 2.61
CCM2-216ENST00000488727 TNIKQ9UKE5 1360 aa31.32■■■□□ 2.6
CCM2-216ENST00000488727 RANGAP1P46060 587 aaPredicted RBP31.31■■■□□ 2.6
CCM2-216ENST00000488727 SAMD9Q5K651 1589 aa31.3■■■□□ 2.6
CCM2-216ENST00000488727 EFCAB5A4FU69 1503 aa31.21■■■□□ 2.59
CCM2-216ENST00000488727 CYB5RLQ6IPT4 315 aa31.2■■■□□ 2.58
CCM2-216ENST00000488727 P3H3Q8IVL6 736 aa31.18■■■□□ 2.58
CCM2-216ENST00000488727 ARHGAP35Q9NRY4 1499 aa31.16■■■□□ 2.58
CCM2-216ENST00000488727 PTPRGP23470 1445 aa31.15■■■□□ 2.58
CCM2-216ENST00000488727 TTBK1Q5TCY1 1321 aaPredicted RBP31.15■■■□□ 2.58
CCM2-216ENST00000488727 FHOD3Q2V2M9 1422 aa31.12■■■□□ 2.57
CCM2-216ENST00000488727 CLIP1P30622 1438 aa31.1■■■□□ 2.57
CCM2-216ENST00000488727 CEP162Q5TB80 1403 aa31.09■■■□□ 2.57
CCM2-216ENST00000488727 ADCY10Q96PN6 1610 aa31■■■□□ 2.55
CCM2-216ENST00000488727 PLB1Q6P1J6 1458 aa30.99■■■□□ 2.55
CCM2-216ENST00000488727 UACAQ9BZF9 1416 aa30.97■■■□□ 2.55
CCM2-216ENST00000488727 ABCA8O94911 1581 aa30.96■■■□□ 2.55
CCM2-216ENST00000488727 ABCC2Q92887 1545 aa30.93■■■□□ 2.54
CCM2-216ENST00000488727 UHRF1BP1LA0JNW5 1464 aa30.92■■■□□ 2.54
CCM2-216ENST00000488727 RAPGEF6Q8TEU7 1601 aa30.89■■■□□ 2.54
CCM2-216ENST00000488727 FMN1Q68DA7 1419 aa30.89■■■□□ 2.54
CCM2-216ENST00000488727 NUP153P49790 1475 aaKnown RBP30.8■■■□□ 2.52
CCM2-216ENST00000488727 KDM5BQ9UGL1 1544 aa30.79■■■□□ 2.52
CCM2-216ENST00000488727 PCF11O94913 1555 aaKnown RBP30.78■■■□□ 2.52
CCM2-216ENST00000488727 ZCCHC11Q5TAX3 1644 aaKnown RBP30.77■■■□□ 2.52
CCM2-216ENST00000488727 HECW1Q76N89 1606 aa30.73■■■□□ 2.51
CCM2-216ENST00000488727 CASKIN1Q8WXD9 1431 aa30.73■■■□□ 2.51
CCM2-216ENST00000488727 ARID3CA6NKF2 412 aa30.72■■■□□ 2.51
CCM2-216ENST00000488727 NPM1P06748 294 aaKnown RBP eCLIP30.71■■■□□ 2.51
CCM2-216ENST00000488727 ATP10BO94823 1461 aa30.7■■■□□ 2.51
CCM2-216ENST00000488727 LRRIQ1Q96JM4 1722 aa30.7■■■□□ 2.5
CCM2-216ENST00000488727 FYCO1Q9BQS8 1478 aa30.69■■■□□ 2.5
CCM2-216ENST00000488727 MAPKBP1O60336 1514 aa30.68■■■□□ 2.5
CCM2-216ENST00000488727 VPS8Q8N3P4 1428 aa30.67■■■□□ 2.5
CCM2-216ENST00000488727 ATP1B4Q9UN42 357 aaPredicted RBP30.66■■■□□ 2.5
CCM2-216ENST00000488727 EPRSP07814 1512 aaKnown RBP30.64■■■□□ 2.5
CCM2-216ENST00000488727 CDK13Q14004 1512 aaKnown RBP30.64■■■□□ 2.5
CCM2-216ENST00000488727 ASXL2Q76L83 1435 aa30.6■■■□□ 2.49
CCM2-216ENST00000488727 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.56■■■□□ 2.48
CCM2-216ENST00000488727 HNRNPUL2Q1KMD3 747 aaKnown RBP30.56■■■□□ 2.48
CCM2-216ENST00000488727 CCDC18Q5T9S5 1454 aa30.54■■■□□ 2.48
CCM2-216ENST00000488727 WDR7Q9Y4E6 1490 aa30.52■■■□□ 2.48
CCM2-216ENST00000488727 DIP2BQ9P265 1576 aa30.46■■■□□ 2.47
CCM2-216ENST00000488727 ABCC10Q5T3U5 1492 aa30.46■■■□□ 2.47
CCM2-216ENST00000488727 KIF13AQ9H1H9 1805 aa30.46■■■□□ 2.47
CCM2-216ENST00000488727 CFAP43Q8NDM7 1665 aa30.43■■■□□ 2.46
CCM2-216ENST00000488727 MAGI3Q5TCQ9 1506 aa30.42■■■□□ 2.46
CCM2-216ENST00000488727 PLEKHD1A6NEE1 506 aa30.42■■■□□ 2.46
CCM2-216ENST00000488727 TIAM1Q13009 1591 aa30.4■■■□□ 2.46
CCM2-216ENST00000488727 KCNH8Q96L42 1107 aa30.38■■■□□ 2.45
CCM2-216ENST00000488727 TRHP20396 242 aaPredicted RBP30.37■■■□□ 2.45
CCM2-216ENST00000488727 CDK11AQ9UQ88 783 aaPredicted RBP30.37■■■□□ 2.45
CCM2-216ENST00000488727 GLI2P10070 1586 aa30.35■■■□□ 2.45
CCM2-216ENST00000488727 FAM69CQ0P6D2 419 aa30.35■■■□□ 2.45
CCM2-216ENST00000488727 TROQ12816 1431 aaPredicted RBP30.35■■■□□ 2.45
CCM2-216ENST00000488727 MAP3K1Q13233 1512 aa30.33■■■□□ 2.45
CCM2-216ENST00000488727 KIF14Q15058 1648 aa30.31■■■□□ 2.44
CCM2-216ENST00000488727 ABCA9Q8IUA7 1624 aa30.28■■■□□ 2.44
CCM2-216ENST00000488727 MAP3K4Q9Y6R4 1608 aa30.28■■■□□ 2.44
CCM2-216ENST00000488727 MTUS2Q5JR59 1369 aa30.26■■■□□ 2.43
CCM2-216ENST00000488727 EHBP1L1Q8N3D4 1523 aa30.26■■■□□ 2.43
CCM2-216ENST00000488727 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP30.26■■■□□ 2.434e-7■■■□□ 18.4
CCM2-216ENST00000488727 TTC37Q6PGP7 1564 aa30.25■■■□□ 2.43
CCM2-216ENST00000488727 LRRC9Q6ZRR7 1453 aa30.24■■■□□ 2.43
CCM2-216ENST00000488727 APLP2Q06481 763 aa30.22■■■□□ 2.43
CCM2-216ENST00000488727 KANK4Q5T7N3 995 aaPredicted RBP30.22■■■□□ 2.43
CCM2-216ENST00000488727 TSPOAP1O95153 1857 aa30.22■■■□□ 2.43
CCM2-216ENST00000488727 PPRC1Q5VV67 1664 aaKnown RBP30.19■■■□□ 2.42
CCM2-216ENST00000488727 CD109Q6YHK3 1445 aa30.17■■■□□ 2.42
CCM2-216ENST00000488727 SUPT6HQ7KZ85 1726 aaKnown RBP30.13■■■□□ 2.41
CCM2-216ENST00000488727 MYO5CQ9NQX4 1742 aa30.11■■■□□ 2.41
CCM2-216ENST00000488727 NCOA2Q15596 1464 aa30.09■■■□□ 2.41
CCM2-216ENST00000488727 CDC42BPAQ5VT25 1732 aa30.07■■■□□ 2.4
CCM2-216ENST00000488727 PLCH2O75038 1416 aa30.04■■■□□ 2.4
CCM2-216ENST00000488727 CDC42BPBQ9Y5S2 1711 aa30.04■■■□□ 2.4
CCM2-216ENST00000488727 PREX2Q70Z35 1606 aa30.04■■■□□ 2.4
CCM2-216ENST00000488727 TEX14Q8IWB6 1497 aa30.02■■■□□ 2.4
CCM2-216ENST00000488727 GPATCH8Q9UKJ3 1502 aaKnown RBP30.01■■■□□ 2.4
CCM2-216ENST00000488727 ARAP3Q8WWN8 1544 aa30.01■■■□□ 2.39
CCM2-216ENST00000488727 CCNB3Q8WWL7 1395 aa29.99■■■□□ 2.39
CCM2-216ENST00000488727 PPARGC1BQ86YN6 1023 aaKnown RBP29.98■■■□□ 2.39
CCM2-216ENST00000488727 FANCAO15360 1455 aa29.97■■■□□ 2.39
Retrieved 100 of 20,778 RNA–protein pairs in 92.7 ms