RNA–Protein interactions for RNA: ENST00000488727.5

CCM2-216, Transcript of CCM2 scaffold protein, humanhuman

TSL 5

Gene CCM2, Length 1,719 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-216ENST00000488727 NISCHQ9Y2I1 1504 aa46.03■■■■■ 4.96
CCM2-216ENST00000488727 CCDC180Q9P1Z9 1646 aa40.71■■■■■ 4.11
CCM2-216ENST00000488727 ABCC9O60706 1549 aa39.38■■■■□ 3.9
CCM2-216ENST00000488727 ZCCHC6Q5VYS8 1495 aaKnown RBP38.46■■■■□ 3.75
CCM2-216ENST00000488727 DCAF8L2P0C7V8 631 aa38.22■■■■□ 3.71
CCM2-216ENST00000488727 NACADO15069 1562 aa38.13■■■■□ 3.69
CCM2-216ENST00000488727 DCAF1Q9Y4B6 1507 aa38.08■■■■□ 3.69
CCM2-216ENST00000488727 RB1CC1Q8TDY2 1594 aa38.06■■■■□ 3.68
CCM2-216ENST00000488727 MYO15BQ96JP2 1530 aa38.05■■■■□ 3.68
CCM2-216ENST00000488727 UNC13AQ9UPW8 1703 aa37.32■■■■□ 3.56
CCM2-216ENST00000488727 SCRIBQ14160 1630 aa37.22■■■■□ 3.55
CCM2-216ENST00000488727 BICRAQ9NZM4 1560 aa36.96■■■■□ 3.51
CCM2-216ENST00000488727 PABPN1Q86U42 306 aaKnown RBP eCLIP36.87■■■■□ 3.49
CCM2-216ENST00000488727 SHROOM4Q9ULL8 1493 aa36.68■■■■□ 3.46
CCM2-216ENST00000488727 EIF4G1Q04637 1599 aaKnown RBP35.92■■■■□ 3.34
CCM2-216ENST00000488727 CECR2Q9BXF3 1484 aa35.84■■■■□ 3.33
CCM2-216ENST00000488727 DNAJC5BQ9UF47 199 aa35.72■■■■□ 3.31
CCM2-216ENST00000488727 CC2D2AQ9P2K1 1620 aa35.66■■■■□ 3.3
CCM2-216ENST00000488727 SMARCA4P51532 1647 aa35.64■■■■□ 3.3
CCM2-216ENST00000488727 BAZ1AQ9NRL2 1556 aaPredicted RBP35.63■■■■□ 3.29
CCM2-216ENST00000488727 MROH2BQ7Z745 1585 aa35.52■■■■□ 3.28
CCM2-216ENST00000488727 ATAD2BQ9ULI0 1458 aa35.29■■■■□ 3.24
CCM2-216ENST00000488727 PEG3Q9GZU2 1588 aa35.27■■■■□ 3.24
CCM2-216ENST00000488727 RSF1Q96T23 1441 aaPredicted RBP35.26■■■■□ 3.23
CCM2-216ENST00000488727 SMARCA2P51531 1590 aa35.25■■■■□ 3.23
CCM2-216ENST00000488727 NCAPD3P42695 1498 aa35.18■■■■□ 3.22
CCM2-216ENST00000488727 WIZO95785 1651 aa35.18■■■■□ 3.22
CCM2-216ENST00000488727 HMGXB3Q12766 1538 aa35.07■■■■□ 3.2
CCM2-216ENST00000488727 BAZ1BQ9UIG0 1483 aaKnown RBP35.02■■■■□ 3.2
CCM2-216ENST00000488727 TOP2AP11388 1531 aaKnown RBP34.79■■■■□ 3.16
CCM2-216ENST00000488727 SUPT5HO00267 1087 aaKnown RBP34.71■■■■□ 3.15
CCM2-216ENST00000488727 CCDC88BA6NC98 1476 aa34.38■■■■□ 3.09
CCM2-216ENST00000488727 NESP48681 1621 aa34.25■■■■□ 3.07
CCM2-216ENST00000488727 LAMC3Q9Y6N6 1575 aa34.18■■■■□ 3.06
CCM2-216ENST00000488727 CADPSQ9ULU8 1353 aa34.17■■■■□ 3.06
CCM2-216ENST00000488727 CFTRP13569 1480 aa34.09■■■■□ 3.05
CCM2-216ENST00000488727 PRDM2Q13029 1718 aa33.93■■■■□ 3.02
CCM2-216ENST00000488727 PDS5BQ9NTI5 1447 aa33.89■■■■□ 3.02
CCM2-216ENST00000488727 KIF21AQ7Z4S6 1674 aa33.88■■■■□ 3.01
CCM2-216ENST00000488727 ERCC6Q03468 1493 aa33.86■■■■□ 3.01
CCM2-216ENST00000488727 FANCD2Q9BXW9 1451 aa33.8■■■■□ 3
CCM2-216ENST00000488727 CEP164Q9UPV0 1460 aa33.71■■■□□ 2.99
CCM2-216ENST00000488727 THOC2Q8NI27 1593 aaKnown RBP33.63■■■□□ 2.97
CCM2-216ENST00000488727 MRC2Q9UBG0 1479 aa33.56■■■□□ 2.96
CCM2-216ENST00000488727 URB2Q14146 1524 aaKnown RBP33.47■■■□□ 2.95
CCM2-216ENST00000488727 WDR62O43379 1518 aa33.46■■■□□ 2.95
CCM2-216ENST00000488727 TOPBP1Q92547 1522 aa33.33■■■□□ 2.93
CCM2-216ENST00000488727 DNMBPQ6XZF7 1577 aa33.33■■■□□ 2.93
CCM2-216ENST00000488727 CUX2O14529 1486 aa33.32■■■□□ 2.92
CCM2-216ENST00000488727 ABCC8Q09428 1581 aa33.32■■■□□ 2.92
CCM2-216ENST00000488727 CUX1P39880 1505 aa33.28■■■□□ 2.92
CCM2-216ENST00000488727 WRNQ14191 1432 aaPredicted RBP eCLIP33.21■■■□□ 2.91
CCM2-216ENST00000488727 SYNJ1O43426 1573 aa33.17■■■□□ 2.9
CCM2-216ENST00000488727 BIVM-ERCC5R4GMW8 1640 aa33.12■■■□□ 2.89
CCM2-216ENST00000488727 TOP2BQ02880 1626 aa33.11■■■□□ 2.89
CCM2-216ENST00000488727 POLA1P09884 1462 aaPredicted RBP33.09■■■□□ 2.89
CCM2-216ENST00000488727 FGD5Q6ZNL6 1462 aa33.08■■■□□ 2.89
CCM2-216ENST00000488727 IFT140Q96RY7 1462 aa32.97■■■□□ 2.87
CCM2-216ENST00000488727 TARBP1Q13395 1621 aaKnown RBP32.96■■■□□ 2.87
CCM2-216ENST00000488727 RAD54L2Q9Y4B4 1467 aa32.95■■■□□ 2.87
CCM2-216ENST00000488727 SOGA1O94964 1423 aa32.92■■■□□ 2.86
CCM2-216ENST00000488727 ZNF608Q9ULD9 1512 aaPredicted RBP32.83■■■□□ 2.85
CCM2-216ENST00000488727 WDR97A6NE52 1622 aa32.83■■■□□ 2.85
CCM2-216ENST00000488727 ABCA10Q8WWZ4 1543 aa32.76■■■□□ 2.84
CCM2-216ENST00000488727 EIF4G3O43432 1585 aaKnown RBP32.74■■■□□ 2.83
CCM2-216ENST00000488727 TRIM41Q8WV44 630 aa32.72■■■□□ 2.83
CCM2-216ENST00000488727 TDRD9Q8NDG6 1382 aaKnown RBP32.7■■■□□ 2.83
CCM2-216ENST00000488727 AQRO60306 1485 aaKnown RBP eCLIP32.69■■■□□ 2.827e-7■■■■■ 33.7
CCM2-216ENST00000488727 CHIC1Q5VXU3 224 aa32.68■■■□□ 2.82
CCM2-216ENST00000488727 ABCA5Q8WWZ7 1642 aa32.63■■■□□ 2.81
CCM2-216ENST00000488727 GAPVD1Q14C86 1478 aa32.57■■■□□ 2.8
CCM2-216ENST00000488727 PBRM1Q86U86 1689 aa32.52■■■□□ 2.8
CCM2-216ENST00000488727 GRIN2BQ13224 1484 aa32.48■■■□□ 2.79
CCM2-216ENST00000488727 KIF27Q86VH2 1401 aa32.45■■■□□ 2.79
CCM2-216ENST00000488727 RUSC2Q8N2Y8 1516 aa32.4■■■□□ 2.78
CCM2-216ENST00000488727 SNAPC4Q5SXM2 1469 aa32.4■■■□□ 2.78
CCM2-216ENST00000488727 ERICH3Q5RHP9 1530 aa32.38■■■□□ 2.77
CCM2-216ENST00000488727 MAGI1Q96QZ7 1491 aaPredicted RBP32.34■■■□□ 2.77
CCM2-216ENST00000488727 IGF1RP08069 1367 aa32.29■■■□□ 2.76
CCM2-216ENST00000488727 ADAMTS12P58397 1594 aa32.27■■■□□ 2.76
CCM2-216ENST00000488727 CHD1O14646 1710 aa32.25■■■□□ 2.75
CCM2-216ENST00000488727 SYNJ2O15056 1496 aa32.22■■■□□ 2.75
CCM2-216ENST00000488727 CUL7Q14999 1698 aa32.19■■■□□ 2.74
CCM2-216ENST00000488727 FHAD1B1AJZ9 1412 aa32.19■■■□□ 2.74
CCM2-216ENST00000488727 FBLN2P98095 1184 aa32.16■■■□□ 2.74
CCM2-216ENST00000488727 EEA1Q15075 1411 aa32.13■■■□□ 2.73
CCM2-216ENST00000488727 CHMP7Q8WUX9 453 aaPredicted RBP32.13■■■□□ 2.73
CCM2-216ENST00000488727 GRIN2AQ12879 1464 aa32.09■■■□□ 2.73
CCM2-216ENST00000488727 CARMIL1Q5VZK9 1371 aa32.09■■■□□ 2.73
CCM2-216ENST00000488727 FAM9AQ8IZU1 332 aaPredicted RBP32.08■■■□□ 2.73
CCM2-216ENST00000488727 CSRNP3Q8WYN3 585 aa32.03■■■□□ 2.72
CCM2-216ENST00000488727 OSCARQ8IYS5 282 aa32■■■□□ 2.71
CCM2-216ENST00000488727 PRXQ9BXM0 1461 aa31.99■■■□□ 2.71
CCM2-216ENST00000488727 RAPGEF2Q9Y4G8 1499 aa31.96■■■□□ 2.71
CCM2-216ENST00000488727 CEP170Q5SW79 1584 aa31.95■■■□□ 2.7
CCM2-216ENST00000488727 NUP160Q12769 1436 aa31.92■■■□□ 2.7
CCM2-216ENST00000488727 CLASP1Q7Z460 1538 aa31.87■■■□□ 2.69
CCM2-216ENST00000488727 KIF21BO75037 1637 aa31.83■■■□□ 2.69
CCM2-216ENST00000488727 DNAJC5Q9H3Z4 198 aa31.72■■■□□ 2.67
CCM2-216ENST00000488727 KIAA0586Q9BVV6 1533 aa31.72■■■□□ 2.67
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms