RNA–Protein interactions for RNA: ENST00000487620.1

ZNF3-215, Transcript of zinc finger protein 3, humanhuman

TSL 2

Gene ZNF3, Length 2,660 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF3-215ENST00000487620 LRRC9Q6ZRR7 1453 aa14□□□□□ -0.17
ZNF3-215ENST00000487620 ATP1B4Q9UN42 357 aaPredicted RBP13.99□□□□□ -0.17
ZNF3-215ENST00000487620 DDX10Q13206 875 aaKnown RBP13.99□□□□□ -0.17
ZNF3-215ENST00000487620 PHLDB1Q86UU1 1377 aa13.99□□□□□ -0.17
ZNF3-215ENST00000487620 CARMIL1Q5VZK9 1371 aa13.98□□□□□ -0.17
ZNF3-215ENST00000487620 WDR97A6NE52 1622 aa13.98□□□□□ -0.17
ZNF3-215ENST00000487620 MAP3K1Q13233 1512 aa13.98□□□□□ -0.17
ZNF3-215ENST00000487620 P3H3Q8IVL6 736 aa13.98□□□□□ -0.17
ZNF3-215ENST00000487620 TSHZ2Q9NRE2 1034 aa13.97□□□□□ -0.17
ZNF3-215ENST00000487620 BCANQ96GW7 911 aa13.95□□□□□ -0.18
ZNF3-215ENST00000487620 FGD5Q6ZNL6 1462 aa13.94□□□□□ -0.18
ZNF3-215ENST00000487620 HIRIP3Q9BW71 556 aaPredicted RBP13.93□□□□□ -0.18
ZNF3-215ENST00000487620 PCF11O94913 1555 aaKnown RBP13.93□□□□□ -0.18
ZNF3-215ENST00000487620 FHAD1B1AJZ9 1412 aa13.93□□□□□ -0.18
ZNF3-215ENST00000487620 CFAP43Q8NDM7 1665 aa13.92□□□□□ -0.18
ZNF3-215ENST00000487620 FKBP8Q14318 412 aa13.9□□□□□ -0.18
ZNF3-215ENST00000487620 CADPSQ9ULU8 1353 aa13.89□□□□□ -0.19
ZNF3-215ENST00000487620 FHOD3Q2V2M9 1422 aa13.88□□□□□ -0.19
ZNF3-215ENST00000487620 PPP1R15AO75807 674 aaPredicted RBP13.87□□□□□ -0.19
ZNF3-215ENST00000487620 TIMELESSQ9UNS1 1208 aa13.85□□□□□ -0.19
ZNF3-215ENST00000487620 TRIM52Q96A61 297 aa13.85□□□□□ -0.19
ZNF3-215ENST00000487620 ANP32CO43423 234 aa13.84□□□□□ -0.19
ZNF3-215ENST00000487620 FYCO1Q9BQS8 1478 aa13.82□□□□□ -0.2
ZNF3-215ENST00000487620 NEFLP07196 543 aa13.82□□□□□ -0.2
ZNF3-215ENST00000487620 TONSLQ96HA7 1378 aa13.8□□□□□ -0.2
ZNF3-215ENST00000487620 ANP32EQ9BTT0 268 aa13.8□□□□□ -0.2
ZNF3-215ENST00000487620 RAD54L2Q9Y4B4 1467 aa13.8□□□□□ -0.2
ZNF3-215ENST00000487620 CCER2I3L3R5 266 aa13.79□□□□□ -0.2
ZNF3-215ENST00000487620 CASKIN1Q8WXD9 1431 aa13.79□□□□□ -0.2
ZNF3-215ENST00000487620 FANCD2Q9BXW9 1451 aa13.79□□□□□ -0.2
ZNF3-215ENST00000487620 EFCAB5A4FU69 1503 aa13.78□□□□□ -0.2
ZNF3-215ENST00000487620 FGD6Q6ZV73 1430 aa13.77□□□□□ -0.21
ZNF3-215ENST00000487620 CTTNBP2Q8WZ74 1663 aa13.77□□□□□ -0.21
ZNF3-215ENST00000487620 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.77□□□□□ -0.21
ZNF3-215ENST00000487620 CCDC18Q5T9S5 1454 aa13.77□□□□□ -0.21
ZNF3-215ENST00000487620 MTUS2Q5JR59 1369 aa13.75□□□□□ -0.21
ZNF3-215ENST00000487620 AQRO60306 1485 aaKnown RBP eCLIP13.75□□□□□ -0.212e-7■■■■■ 35.8
ZNF3-215ENST00000487620 ABCA10Q8WWZ4 1543 aa13.74□□□□□ -0.21
ZNF3-215ENST00000487620 DNMBPQ6XZF7 1577 aa13.74□□□□□ -0.21
ZNF3-215ENST00000487620 POLA1P09884 1462 aaPredicted RBP13.73□□□□□ -0.21
ZNF3-215ENST00000487620 FMN1Q68DA7 1419 aa13.73□□□□□ -0.21
ZNF3-215ENST00000487620 CUL7Q14999 1698 aa13.73□□□□□ -0.21
ZNF3-215ENST00000487620 CC2D2AQ9P2K1 1620 aa13.72□□□□□ -0.21
ZNF3-215ENST00000487620 PTPRKQ15262 1439 aa13.72□□□□□ -0.21
ZNF3-215ENST00000487620 UACAQ9BZF9 1416 aa13.72□□□□□ -0.21
ZNF3-215ENST00000487620 PTPN23Q9H3S7 1636 aa13.71□□□□□ -0.21
ZNF3-215ENST00000487620 TOPBP1Q92547 1522 aa13.71□□□□□ -0.21
ZNF3-215ENST00000487620 HFM1A2PYH4 1435 aa13.71□□□□□ -0.22
ZNF3-215ENST00000487620 SNAPC4Q5SXM2 1469 aa13.7□□□□□ -0.22
ZNF3-215ENST00000487620 RBM19Q9Y4C8 960 aaKnown RBP13.7□□□□□ -0.22
ZNF3-215ENST00000487620 LRRIQ1Q96JM4 1722 aa13.69□□□□□ -0.22
ZNF3-215ENST00000487620 NAIPQ13075 1403 aa13.67□□□□□ -0.22
ZNF3-215ENST00000487620 NCOA2Q15596 1464 aa13.67□□□□□ -0.22
ZNF3-215ENST00000487620 NESP48681 1621 aa13.67□□□□□ -0.22
ZNF3-215ENST00000487620 HNRNPUQ00839 825 aaKnown RBP eCLIP13.66□□□□□ -0.22
ZNF3-215ENST00000487620 MYOM3Q5VTT5 1437 aa13.66□□□□□ -0.22
ZNF3-215ENST00000487620 SUPT6HQ7KZ85 1726 aaKnown RBP13.64□□□□□ -0.23
ZNF3-215ENST00000487620 RRP7BPQ9NSQ0 103 aa13.63□□□□□ -0.23
ZNF3-215ENST00000487620 CHIC2Q9UKJ5 165 aa13.63□□□□□ -0.23
ZNF3-215ENST00000487620 IRX6P78412 446 aaPredicted RBP13.63□□□□□ -0.23
ZNF3-215ENST00000487620 SAMD9Q5K651 1589 aa13.62□□□□□ -0.23
ZNF3-215ENST00000487620 TDRD9Q8NDG6 1382 aaKnown RBP13.62□□□□□ -0.23
ZNF3-215ENST00000487620 KDM5BQ9UGL1 1544 aa13.61□□□□□ -0.23
ZNF3-215ENST00000487620 GRIN2BQ13224 1484 aa13.61□□□□□ -0.23
ZNF3-215ENST00000487620 HSPA5P11021 654 aaKnown RBP13.6□□□□□ -0.23
ZNF3-215ENST00000487620 EHBP1L1Q8N3D4 1523 aa13.6□□□□□ -0.23
ZNF3-215ENST00000487620 WASHC2AQ641Q2 1341 aa13.59□□□□□ -0.23
ZNF3-215ENST00000487620 URB2Q14146 1524 aaKnown RBP13.57□□□□□ -0.24
ZNF3-215ENST00000487620 THOC2Q8NI27 1593 aaKnown RBP13.57□□□□□ -0.24
ZNF3-215ENST00000487620 UGGT2Q9NYU1 1516 aa13.56□□□□□ -0.24
ZNF3-215ENST00000487620 GAPVD1Q14C86 1478 aa13.56□□□□□ -0.24
ZNF3-215ENST00000487620 MAGI3Q5TCQ9 1506 aa13.56□□□□□ -0.24
ZNF3-215ENST00000487620 ABCA5Q8WWZ7 1642 aa13.56□□□□□ -0.24
ZNF3-215ENST00000487620 EIF4G2P78344 907 aaKnown RBP eCLIP13.56□□□□□ -0.24
ZNF3-215ENST00000487620 GCC2Q8IWJ2 1684 aa13.55□□□□□ -0.24
ZNF3-215ENST00000487620 HECW1Q76N89 1606 aa13.54□□□□□ -0.24
ZNF3-215ENST00000487620 KDM6BO15054 1643 aa13.53□□□□□ -0.24
ZNF3-215ENST00000487620 CDK11AQ9UQ88 783 aaPredicted RBP13.53□□□□□ -0.24
ZNF3-215ENST00000487620 DENND4BO75064 1496 aaPredicted RBP13.53□□□□□ -0.24
ZNF3-215ENST00000487620 FOXD1Q16676 465 aa13.53□□□□□ -0.24
ZNF3-215ENST00000487620 ARID3CA6NKF2 412 aa13.52□□□□□ -0.24
ZNF3-215ENST00000487620 CCDC184Q52MB2 194 aa13.52□□□□□ -0.24
ZNF3-215ENST00000487620 ARHGEF11O15085 1522 aa13.52□□□□□ -0.24
ZNF3-215ENST00000487620 KIF21AQ7Z4S6 1674 aa13.51□□□□□ -0.25
ZNF3-215ENST00000487620 MPHOSPH9Q99550 1183 aa13.51□□□□□ -0.25
ZNF3-215ENST00000487620 LAMC3Q9Y6N6 1575 aa13.51□□□□□ -0.25
ZNF3-215ENST00000487620 MSH5O43196 834 aa13.51□□□□□ -0.25
ZNF3-215ENST00000487620 L3MBTL2Q969R5 705 aa13.51□□□□□ -0.25
ZNF3-215ENST00000487620 CNTLNQ9NXG0 1405 aa13.51□□□□□ -0.25
ZNF3-215ENST00000487620 FAM9BQ8IZU0 186 aa13.5□□□□□ -0.25
ZNF3-215ENST00000487620 TCOF1Q13428 1488 aaKnown RBP13.5□□□□□ -0.25
ZNF3-215ENST00000487620 C11orf95C9JLR9 678 aaPredicted RBP13.48□□□□□ -0.25
ZNF3-215ENST00000487620 PRKRIP1Q9H875 184 aaPredicted RBP13.47□□□□□ -0.25
ZNF3-215ENST00000487620 MRS2Q9HD23 443 aa13.47□□□□□ -0.25
ZNF3-215ENST00000487620 CDK13Q14004 1512 aaKnown RBP13.47□□□□□ -0.25
ZNF3-215ENST00000487620 BCL11AQ9H165 835 aa13.47□□□□□ -0.25
ZNF3-215ENST00000487620 EPRSP07814 1512 aaKnown RBP13.46□□□□□ -0.25
ZNF3-215ENST00000487620 CCDC7Q96M83 1385 aa13.46□□□□□ -0.26
ZNF3-215ENST00000487620 AKNAQ7Z591 1439 aa13.45□□□□□ -0.26
ZNF3-215ENST00000487620 PPP4R2Q9NY27 417 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms