RNA–Protein interactions for RNA: ENST00000487026.5

LIME1-206, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LIME1, Length 805 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-206ENST00000487026 RUSC2Q8N2Y8 1516 aa42.56■■■■■ 4.4
LIME1-206ENST00000487026 CUL7Q14999 1698 aa42.48■■■■■ 4.39
LIME1-206ENST00000487026 CARMIL1Q5VZK9 1371 aa42.42■■■■■ 4.38
LIME1-206ENST00000487026 KIAA0586Q9BVV6 1533 aa42.41■■■■■ 4.38
LIME1-206ENST00000487026 NPM1P06748 294 aaKnown RBP eCLIP42.16■■■■■ 4.34
LIME1-206ENST00000487026 TTBK1Q5TCY1 1321 aaPredicted RBP42.11■■■■■ 4.33
LIME1-206ENST00000487026 ADCY10Q96PN6 1610 aa42.09■■■■■ 4.33
LIME1-206ENST00000487026 KIF13AQ9H1H9 1805 aa42.04■■■■■ 4.32
LIME1-206ENST00000487026 PTPRGP23470 1445 aa42.03■■■■■ 4.32
LIME1-206ENST00000487026 RAPGEF2Q9Y4G8 1499 aa42.02■■■■■ 4.32
LIME1-206ENST00000487026 IQGAP2Q13576 1575 aa42.01■■■■■ 4.32
LIME1-206ENST00000487026 FAM69CQ0P6D2 419 aa41.99■■■■■ 4.31
LIME1-206ENST00000487026 CARMIL2Q6F5E8 1435 aa41.99■■■■■ 4.31
LIME1-206ENST00000487026 TNIKQ9UKE5 1360 aa41.95■■■■■ 4.31
LIME1-206ENST00000487026 MAPKBP1O60336 1514 aa41.94■■■■■ 4.3
LIME1-206ENST00000487026 ABCC10Q5T3U5 1492 aa41.92■■■■■ 4.3
LIME1-206ENST00000487026 DISP1Q96F81 1524 aa41.85■■■■■ 4.29
LIME1-206ENST00000487026 DIP2BQ9P265 1576 aa41.8■■■■■ 4.28
LIME1-206ENST00000487026 UGGT2Q9NYU1 1516 aa41.76■■■■■ 4.28
LIME1-206ENST00000487026 ABCC2Q92887 1545 aa41.72■■■■■ 4.27
LIME1-206ENST00000487026 UACAQ9BZF9 1416 aa41.69■■■■■ 4.26
LIME1-206ENST00000487026 UHRF1BP1LA0JNW5 1464 aa41.65■■■■■ 4.26
LIME1-206ENST00000487026 KIAA0556O60303 1618 aa41.64■■■■■ 4.26
LIME1-206ENST00000487026 PRXQ9BXM0 1461 aa41.64■■■■■ 4.26
LIME1-206ENST00000487026 AEBP2Q6ZN18 517 aaPredicted RBP41.62■■■■■ 4.25
LIME1-206ENST00000487026 ASXL2Q76L83 1435 aa41.6■■■■■ 4.25
LIME1-206ENST00000487026 CTTNBP2Q8WZ74 1663 aa41.59■■■■■ 4.25
LIME1-206ENST00000487026 TSPOAP1O95153 1857 aa41.56■■■■■ 4.24
LIME1-206ENST00000487026 PLB1Q6P1J6 1458 aa41.53■■■■■ 4.24
LIME1-206ENST00000487026 KDM5BQ9UGL1 1544 aa41.48■■■■■ 4.23
LIME1-206ENST00000487026 CSRNP3Q8WYN3 585 aa41.47■■■■■ 4.23
LIME1-206ENST00000487026 GOLGA3Q08378 1498 aa41.45■■■■■ 4.23
LIME1-206ENST00000487026 KDM6BO15054 1643 aa41.39■■■■■ 4.22
LIME1-206ENST00000487026 ZCCHC11Q5TAX3 1644 aaKnown RBP41.39■■■■■ 4.22
LIME1-206ENST00000487026 GLI2P10070 1586 aa41.37■■■■■ 4.21
LIME1-206ENST00000487026 EPRSP07814 1512 aaKnown RBP41.33■■■■■ 4.21
LIME1-206ENST00000487026 P3H3Q8IVL6 736 aa41.32■■■■■ 4.21
LIME1-206ENST00000487026 PPRC1Q5VV67 1664 aaKnown RBP41.26■■■■■ 4.2
LIME1-206ENST00000487026 FAM9AQ8IZU1 332 aaPredicted RBP41.26■■■■■ 4.2
LIME1-206ENST00000487026 ABCA8O94911 1581 aa41.25■■■■■ 4.19
LIME1-206ENST00000487026 EEA1Q15075 1411 aa41.19■■■■■ 4.18
LIME1-206ENST00000487026 WDR7Q9Y4E6 1490 aa41.19■■■■■ 4.18
LIME1-206ENST00000487026 MAP3K4Q9Y6R4 1608 aa41.15■■■■■ 4.18
LIME1-206ENST00000487026 KCNH8Q96L42 1107 aa41.14■■■■■ 4.18
LIME1-206ENST00000487026 ARID3CA6NKF2 412 aa41.13■■■■■ 4.17
LIME1-206ENST00000487026 RANGAP1P46060 587 aaPredicted RBP41.12■■■■■ 4.17
LIME1-206ENST00000487026 COL17A1Q9UMD9 1497 aaPredicted RBP41.05■■■■■ 4.16
LIME1-206ENST00000487026 SAMD9Q5K651 1589 aa41.04■■■■■ 4.16
LIME1-206ENST00000487026 TEX14Q8IWB6 1497 aa41.02■■■■■ 4.16
LIME1-206ENST00000487026 KDM4FA0A1W2PPD8 638 aa40.99■■■■■ 4.15
LIME1-206ENST00000487026 ATP10BO94823 1461 aa40.97■■■■■ 4.15
LIME1-206ENST00000487026 CD109Q6YHK3 1445 aa40.96■■■■■ 4.15
LIME1-206ENST00000487026 CHIC1Q5VXU3 224 aa40.95■■■■■ 4.15
LIME1-206ENST00000487026 EHMT2Q96KQ7 1210 aa40.89■■■■■ 4.14
LIME1-206ENST00000487026 CFAP43Q8NDM7 1665 aa40.88■■■■■ 4.13
LIME1-206ENST00000487026 FHOD3Q2V2M9 1422 aa40.87■■■■■ 4.13
LIME1-206ENST00000487026 KIF21BO75037 1637 aa40.85■■■■■ 4.13
LIME1-206ENST00000487026 RAPGEF6Q8TEU7 1601 aa40.85■■■■■ 4.13
LIME1-206ENST00000487026 MAGI3Q5TCQ9 1506 aa40.85■■■■■ 4.13
LIME1-206ENST00000487026 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP40.84■■■■■ 4.13
LIME1-206ENST00000487026 HNRNPUL2Q1KMD3 747 aaKnown RBP40.84■■■■■ 4.13
LIME1-206ENST00000487026 NUP153P49790 1475 aaKnown RBP40.74■■■■■ 4.11
LIME1-206ENST00000487026 UBTFP17480 764 aaKnown RBP40.72■■■■■ 4.11
LIME1-206ENST00000487026 EFCAB5A4FU69 1503 aa40.65■■■■■ 4.1
LIME1-206ENST00000487026 ADGRL1O94910 1474 aa40.64■■■■■ 4.1
LIME1-206ENST00000487026 ABCA9Q8IUA7 1624 aa40.63■■■■■ 4.09
LIME1-206ENST00000487026 PLEKHD1A6NEE1 506 aa40.56■■■■■ 4.08
LIME1-206ENST00000487026 ARAP3Q8WWN8 1544 aa40.53■■■■■ 4.08
LIME1-206ENST00000487026 PHLDB1Q86UU1 1377 aa40.46■■■■■ 4.07
LIME1-206ENST00000487026 RAPGEF3O95398 923 aa40.44■■■■■ 4.06
LIME1-206ENST00000487026 ATP1B4Q9UN42 357 aaPredicted RBP40.44■■■■■ 4.06
LIME1-206ENST00000487026 ARHGAP35Q9NRY4 1499 aa40.42■■■■■ 4.06
LIME1-206ENST00000487026 NEO1Q92859 1461 aa40.4■■■■■ 4.06
LIME1-206ENST00000487026 CDK13Q14004 1512 aaKnown RBP40.4■■■■■ 4.06
LIME1-206ENST00000487026 FMN1Q68DA7 1419 aa40.33■■■■■ 4.05
LIME1-206ENST00000487026 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP40.32■■■■■ 4.05
LIME1-206ENST00000487026 TTC37Q6PGP7 1564 aa40.25■■■■■ 4.03
LIME1-206ENST00000487026 AKNAQ7Z591 1439 aa40.23■■■■■ 4.03
LIME1-206ENST00000487026 HECW1Q76N89 1606 aa40.23■■■■■ 4.03
LIME1-206ENST00000487026 FRMPD1Q5SYB0 1578 aa40.22■■■■■ 4.03
LIME1-206ENST00000487026 FANCAO15360 1455 aa40.21■■■■■ 4.03
LIME1-206ENST00000487026 DENND4BO75064 1496 aaPredicted RBP40.17■■■■■ 4.02
LIME1-206ENST00000487026 CDK11AQ9UQ88 783 aaPredicted RBP40.14■■■■■ 4.02
LIME1-206ENST00000487026 CFAP74Q9C0B2 1584 aa40.1■■■■■ 4.01
LIME1-206ENST00000487026 PLCH2O75038 1416 aa40.08■■■■■ 4.01
LIME1-206ENST00000487026 ARID4BQ4LE39 1312 aaPredicted RBP40.07■■■■■ 4
LIME1-206ENST00000487026 RICTORQ6R327 1708 aa40.07■■■■■ 4
LIME1-206ENST00000487026 LRRIQ1Q96JM4 1722 aa40.02■■■■■ 4
LIME1-206ENST00000487026 KIF14Q15058 1648 aa40■■■■□ 3.99
LIME1-206ENST00000487026 TROQ12816 1431 aaPredicted RBP39.99■■■■□ 3.99
LIME1-206ENST00000487026 HECW2Q9P2P5 1572 aa39.99■■■■□ 3.99
LIME1-206ENST00000487026 SCAPERQ9BY12 1400 aa39.99■■■■□ 3.99
LIME1-206ENST00000487026 EFCAB2Q5VUJ9 269 aa39.97■■■■□ 3.99
LIME1-206ENST00000487026 ADAMTSL3P82987 1691 aa39.96■■■■□ 3.99
LIME1-206ENST00000487026 ARHGEF40Q8TER5 1519 aa39.96■■■■□ 3.99
LIME1-206ENST00000487026 CASKIN1Q8WXD9 1431 aa39.95■■■■□ 3.99
LIME1-206ENST00000487026 PCF11O94913 1555 aaKnown RBP39.93■■■■□ 3.98
LIME1-206ENST00000487026 MYO5CQ9NQX4 1742 aa39.93■■■■□ 3.98
LIME1-206ENST00000487026 CLIP1P30622 1438 aa39.92■■■■□ 3.98
LIME1-206ENST00000487026 YEATS2Q9ULM3 1422 aa39.91■■■■□ 3.98
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms