RNA–Protein interactions for RNA: ENST00000486100.1

PRPF40A-209, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 4

Gene PRPF40A, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-209ENST00000486100 PRG4Q92954 1404 aaPredicted RBP31.55■■■□□ 2.64
PRPF40A-209ENST00000486100 CUL7Q14999 1698 aa31.54■■■□□ 2.64
PRPF40A-209ENST00000486100 KIAA0586Q9BVV6 1533 aa31.48■■■□□ 2.63
PRPF40A-209ENST00000486100 RUSC2Q8N2Y8 1516 aa31.47■■■□□ 2.63
PRPF40A-209ENST00000486100 RAPGEF2Q9Y4G8 1499 aa31.28■■■□□ 2.6
PRPF40A-209ENST00000486100 NPM1P06748 294 aaKnown RBP eCLIP31.17■■■□□ 2.58
PRPF40A-209ENST00000486100 CARMIL2Q6F5E8 1435 aa31.16■■■□□ 2.58
PRPF40A-209ENST00000486100 IQGAP2Q13576 1575 aa31.15■■■□□ 2.58
PRPF40A-209ENST00000486100 PTPRGP23470 1445 aa31.14■■■□□ 2.58
PRPF40A-209ENST00000486100 TNIKQ9UKE5 1360 aa31.11■■■□□ 2.57
PRPF40A-209ENST00000486100 TTBK1Q5TCY1 1321 aaPredicted RBP31.07■■■□□ 2.56
PRPF40A-209ENST00000486100 PRXQ9BXM0 1461 aa31.06■■■□□ 2.56
PRPF40A-209ENST00000486100 ADCY10Q96PN6 1610 aa31.02■■■□□ 2.56
PRPF40A-209ENST00000486100 DISP1Q96F81 1524 aa31.02■■■□□ 2.56
PRPF40A-209ENST00000486100 CSRNP3Q8WYN3 585 aa31.01■■■□□ 2.55
PRPF40A-209ENST00000486100 UGGT2Q9NYU1 1516 aa31.01■■■□□ 2.55
PRPF40A-209ENST00000486100 MAPKBP1O60336 1514 aa30.95■■■□□ 2.55
PRPF40A-209ENST00000486100 FAM69CQ0P6D2 419 aa30.94■■■□□ 2.54
PRPF40A-209ENST00000486100 ABCC10Q5T3U5 1492 aa30.91■■■□□ 2.54
PRPF40A-209ENST00000486100 UACAQ9BZF9 1416 aa30.9■■■□□ 2.54
PRPF40A-209ENST00000486100 EEA1Q15075 1411 aa30.89■■■□□ 2.53
PRPF40A-209ENST00000486100 UHRF1BP1LA0JNW5 1464 aa30.87■■■□□ 2.53
PRPF40A-209ENST00000486100 ABCC2Q92887 1545 aa30.86■■■□□ 2.53
PRPF40A-209ENST00000486100 KIAA0556O60303 1618 aa30.85■■■□□ 2.53
PRPF40A-209ENST00000486100 CTTNBP2Q8WZ74 1663 aa30.83■■■□□ 2.53
PRPF40A-209ENST00000486100 GOLGA3Q08378 1498 aa30.82■■■□□ 2.53
PRPF40A-209ENST00000486100 KIF13AQ9H1H9 1805 aa30.82■■■□□ 2.52
PRPF40A-209ENST00000486100 CHIC1Q5VXU3 224 aa30.8■■■□□ 2.52
PRPF40A-209ENST00000486100 FAM9AQ8IZU1 332 aaPredicted RBP30.78■■■□□ 2.52
PRPF40A-209ENST00000486100 DIP2BQ9P265 1576 aa30.76■■■□□ 2.52
PRPF40A-209ENST00000486100 ASXL2Q76L83 1435 aa30.73■■■□□ 2.51
PRPF40A-209ENST00000486100 PLB1Q6P1J6 1458 aa30.72■■■□□ 2.51
PRPF40A-209ENST00000486100 KDM5BQ9UGL1 1544 aa30.72■■■□□ 2.51
PRPF40A-209ENST00000486100 P3H3Q8IVL6 736 aa30.66■■■□□ 2.5
PRPF40A-209ENST00000486100 ABCA8O94911 1581 aa30.58■■■□□ 2.49
PRPF40A-209ENST00000486100 GLI2P10070 1586 aa30.56■■■□□ 2.48
PRPF40A-209ENST00000486100 ZCCHC11Q5TAX3 1644 aaKnown RBP30.55■■■□□ 2.48
PRPF40A-209ENST00000486100 EPRSP07814 1512 aaKnown RBP30.53■■■□□ 2.48
PRPF40A-209ENST00000486100 RANGAP1P46060 587 aaPredicted RBP30.52■■■□□ 2.48
PRPF40A-209ENST00000486100 KIF21BO75037 1637 aa30.51■■■□□ 2.48
PRPF40A-209ENST00000486100 SAMD9Q5K651 1589 aa30.49■■■□□ 2.47
PRPF40A-209ENST00000486100 WDR7Q9Y4E6 1490 aa30.47■■■□□ 2.47
PRPF40A-209ENST00000486100 TSPOAP1O95153 1857 aa30.46■■■□□ 2.47
PRPF40A-209ENST00000486100 UBTFP17480 764 aaKnown RBP30.42■■■□□ 2.46
PRPF40A-209ENST00000486100 KCNH8Q96L42 1107 aa30.42■■■□□ 2.46
PRPF40A-209ENST00000486100 EHMT2Q96KQ7 1210 aa30.41■■■□□ 2.46
PRPF40A-209ENST00000486100 ARID3CA6NKF2 412 aa30.4■■■□□ 2.46
PRPF40A-209ENST00000486100 KDM6BO15054 1643 aa30.4■■■□□ 2.46
PRPF40A-209ENST00000486100 ATP10BO94823 1461 aa30.39■■■□□ 2.46
PRPF40A-209ENST00000486100 FHOD3Q2V2M9 1422 aa30.37■■■□□ 2.45
PRPF40A-209ENST00000486100 PPRC1Q5VV67 1664 aaKnown RBP30.34■■■□□ 2.45
PRPF40A-209ENST00000486100 MAP3K4Q9Y6R4 1608 aa30.34■■■□□ 2.45
PRPF40A-209ENST00000486100 AEBP2Q6ZN18 517 aaPredicted RBP30.34■■■□□ 2.45
PRPF40A-209ENST00000486100 TEX14Q8IWB6 1497 aa30.31■■■□□ 2.44
PRPF40A-209ENST00000486100 EFCAB5A4FU69 1503 aa30.3■■■□□ 2.44
PRPF40A-209ENST00000486100 CD109Q6YHK3 1445 aa30.3■■■□□ 2.44
PRPF40A-209ENST00000486100 RAPGEF6Q8TEU7 1601 aa30.29■■■□□ 2.44
PRPF40A-209ENST00000486100 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.29■■■□□ 2.44
PRPF40A-209ENST00000486100 HNRNPUL2Q1KMD3 747 aaKnown RBP30.29■■■□□ 2.44
PRPF40A-209ENST00000486100 NUP153P49790 1475 aaKnown RBP30.25■■■□□ 2.43
PRPF40A-209ENST00000486100 COL17A1Q9UMD9 1497 aaPredicted RBP30.24■■■□□ 2.43
PRPF40A-209ENST00000486100 MAGI3Q5TCQ9 1506 aa30.22■■■□□ 2.43
PRPF40A-209ENST00000486100 CFAP43Q8NDM7 1665 aa30.17■■■□□ 2.42
PRPF40A-209ENST00000486100 PLEKHD1A6NEE1 506 aa30.16■■■□□ 2.42
PRPF40A-209ENST00000486100 ARHGAP35Q9NRY4 1499 aa30.13■■■□□ 2.41
PRPF40A-209ENST00000486100 FMN1Q68DA7 1419 aa30.1■■■□□ 2.41
PRPF40A-209ENST00000486100 ABCA9Q8IUA7 1624 aa30.06■■■□□ 2.4
PRPF40A-209ENST00000486100 KDM4FA0A1W2PPD8 638 aa30.05■■■□□ 2.4
PRPF40A-209ENST00000486100 ATP1B4Q9UN42 357 aaPredicted RBP30.04■■■□□ 2.4
PRPF40A-209ENST00000486100 PHLDB1Q86UU1 1377 aa30.03■■■□□ 2.4
PRPF40A-209ENST00000486100 ARAP3Q8WWN8 1544 aa29.98■■■□□ 2.39
PRPF40A-209ENST00000486100 CDK13Q14004 1512 aaKnown RBP29.96■■■□□ 2.39
PRPF40A-209ENST00000486100 NEO1Q92859 1461 aa29.93■■■□□ 2.38
PRPF40A-209ENST00000486100 CDK11AQ9UQ88 783 aaPredicted RBP29.93■■■□□ 2.38
PRPF40A-209ENST00000486100 HECW1Q76N89 1606 aa29.9■■■□□ 2.38
PRPF40A-209ENST00000486100 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP29.87■■■□□ 2.378e-8■■□□□ 12
PRPF40A-209ENST00000486100 RAPGEF3O95398 923 aa29.87■■■□□ 2.37
PRPF40A-209ENST00000486100 CLIP1P30622 1438 aa29.83■■■□□ 2.37
PRPF40A-209ENST00000486100 ADGRL1O94910 1474 aa29.81■■■□□ 2.36
PRPF40A-209ENST00000486100 CASKIN1Q8WXD9 1431 aa29.8■■■□□ 2.36
PRPF40A-209ENST00000486100 AKNAQ7Z591 1439 aa29.79■■■□□ 2.36
PRPF40A-209ENST00000486100 FANCAO15360 1455 aa29.79■■■□□ 2.36
PRPF40A-209ENST00000486100 TTC37Q6PGP7 1564 aa29.77■■■□□ 2.36
PRPF40A-209ENST00000486100 PLCH2O75038 1416 aa29.77■■■□□ 2.36
PRPF40A-209ENST00000486100 TROQ12816 1431 aaPredicted RBP29.76■■■□□ 2.35
PRPF40A-209ENST00000486100 DENND4BO75064 1496 aaPredicted RBP29.74■■■□□ 2.35
PRPF40A-209ENST00000486100 CCDC18Q5T9S5 1454 aa29.7■■■□□ 2.35
PRPF40A-209ENST00000486100 EFCAB2Q5VUJ9 269 aa29.7■■■□□ 2.35
PRPF40A-209ENST00000486100 PCF11O94913 1555 aaKnown RBP29.69■■■□□ 2.34
PRPF40A-209ENST00000486100 CFAP74Q9C0B2 1584 aa29.69■■■□□ 2.34
PRPF40A-209ENST00000486100 FYCO1Q9BQS8 1478 aa29.67■■■□□ 2.34
PRPF40A-209ENST00000486100 FRMPD1Q5SYB0 1578 aa29.66■■■□□ 2.34
PRPF40A-209ENST00000486100 LRRIQ1Q96JM4 1722 aa29.65■■■□□ 2.34
PRPF40A-209ENST00000486100 KIF14Q15058 1648 aa29.63■■■□□ 2.33
PRPF40A-209ENST00000486100 SCAPERQ9BY12 1400 aa29.62■■■□□ 2.33
PRPF40A-209ENST00000486100 CEP162Q5TB80 1403 aa29.57■■■□□ 2.32
PRPF40A-209ENST00000486100 RICTORQ6R327 1708 aa29.56■■■□□ 2.32
PRPF40A-209ENST00000486100 ARID4BQ4LE39 1312 aaPredicted RBP29.55■■■□□ 2.32
PRPF40A-209ENST00000486100 LOC105371045A0A1W2PR82 267 aa29.55■■■□□ 2.32
PRPF40A-209ENST00000486100 MYO5CQ9NQX4 1742 aa29.54■■■□□ 2.32
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms