RNA–Protein interactions for RNA: ENST00000485465.1

CHMP3-207, Transcript of charged multivesicular body protein 3, humanhuman

TSL 3

Gene CHMP3, Length 920 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-207ENST00000485465 OSCARQ8IYS5 282 aa28.62■■■□□ 2.17
CHMP3-207ENST00000485465 KIAA0586Q9BVV6 1533 aa28.55■■■□□ 2.16
CHMP3-207ENST00000485465 CTTNBP2Q8WZ74 1663 aa28.51■■■□□ 2.15
CHMP3-207ENST00000485465 TNIKQ9UKE5 1360 aa28.5■■■□□ 2.15
CHMP3-207ENST00000485465 CLASP1Q7Z460 1538 aa28.5■■■□□ 2.15
CHMP3-207ENST00000485465 IQGAP2Q13576 1575 aa28.46■■■□□ 2.15
CHMP3-207ENST00000485465 JPH4Q96JJ6 628 aa28.41■■■□□ 2.14
CHMP3-207ENST00000485465 UGGT2Q9NYU1 1516 aa28.34■■■□□ 2.13
CHMP3-207ENST00000485465 SHROOM2Q13796 1616 aa28.34■■■□□ 2.13
CHMP3-207ENST00000485465 RANGAP1P46060 587 aaPredicted RBP28.34■■■□□ 2.13
CHMP3-207ENST00000485465 PRG4Q92954 1404 aaPredicted RBP28.28■■■□□ 2.12
CHMP3-207ENST00000485465 CEP162Q5TB80 1403 aa28.26■■■□□ 2.12
CHMP3-207ENST00000485465 DISP1Q96F81 1524 aa28.24■■■□□ 2.11
CHMP3-207ENST00000485465 CLIP1P30622 1438 aa28.24■■■□□ 2.11
CHMP3-207ENST00000485465 CARMIL2Q6F5E8 1435 aa28.23■■■□□ 2.11
CHMP3-207ENST00000485465 SAMD9Q5K651 1589 aa28.21■■■□□ 2.11
CHMP3-207ENST00000485465 EFCAB5A4FU69 1503 aa28.21■■■□□ 2.11
CHMP3-207ENST00000485465 ARHGAP35Q9NRY4 1499 aa28.19■■■□□ 2.1
CHMP3-207ENST00000485465 ERCC6L2Q5T890 1561 aa28.19■■■□□ 2.1
CHMP3-207ENST00000485465 KIAA0556O60303 1618 aa28.18■■■□□ 2.1
CHMP3-207ENST00000485465 P3H3Q8IVL6 736 aa28.18■■■□□ 2.1
CHMP3-207ENST00000485465 ARHGEF11O15085 1522 aa28.12■■■□□ 2.09
CHMP3-207ENST00000485465 FHOD3Q2V2M9 1422 aa28.1■■■□□ 2.09
CHMP3-207ENST00000485465 ARAP1Q96P48 1450 aa28.07■■■□□ 2.08
CHMP3-207ENST00000485465 DNAJC5Q9H3Z4 198 aa28.06■■■□□ 2.08
CHMP3-207ENST00000485465 RIMBP3CA6NJZ7 1639 aa28.04■■■□□ 2.08
CHMP3-207ENST00000485465 RIMBP3BA6NNM3 1639 aa28.04■■■□□ 2.08
CHMP3-207ENST00000485465 RIMBP3Q9UFD9 1639 aa28.04■■■□□ 2.08
CHMP3-207ENST00000485465 PTPRGP23470 1445 aa28.03■■■□□ 2.08
CHMP3-207ENST00000485465 TTBK1Q5TCY1 1321 aaPredicted RBP28.02■■■□□ 2.08
CHMP3-207ENST00000485465 FMN1Q68DA7 1419 aa27.96■■■□□ 2.07
CHMP3-207ENST00000485465 VPS8Q8N3P4 1428 aa27.88■■■□□ 2.05
CHMP3-207ENST00000485465 PLB1Q6P1J6 1458 aa27.87■■■□□ 2.05
CHMP3-207ENST00000485465 UACAQ9BZF9 1416 aa27.86■■■□□ 2.05
CHMP3-207ENST00000485465 CYB5RLQ6IPT4 315 aa27.86■■■□□ 2.05
CHMP3-207ENST00000485465 ABCA8O94911 1581 aa27.85■■■□□ 2.05
CHMP3-207ENST00000485465 CASKIN1Q8WXD9 1431 aa27.82■■■□□ 2.04
CHMP3-207ENST00000485465 RAPGEF6Q8TEU7 1601 aa27.81■■■□□ 2.04
CHMP3-207ENST00000485465 PCF11O94913 1555 aaKnown RBP27.79■■■□□ 2.04
CHMP3-207ENST00000485465 UHRF1BP1LA0JNW5 1464 aa27.79■■■□□ 2.04
CHMP3-207ENST00000485465 ABCC2Q92887 1545 aa27.77■■■□□ 2.04
CHMP3-207ENST00000485465 FYCO1Q9BQS8 1478 aa27.77■■■□□ 2.04
CHMP3-207ENST00000485465 ATP1B4Q9UN42 357 aaPredicted RBP27.77■■■□□ 2.04
CHMP3-207ENST00000485465 NUP153P49790 1475 aaKnown RBP27.74■■■□□ 2.03
CHMP3-207ENST00000485465 ADCY10Q96PN6 1610 aa27.74■■■□□ 2.03
CHMP3-207ENST00000485465 HECW1Q76N89 1606 aa27.73■■■□□ 2.03
CHMP3-207ENST00000485465 ARID3CA6NKF2 412 aa27.67■■■□□ 2.02
CHMP3-207ENST00000485465 EPRSP07814 1512 aaKnown RBP27.65■■■□□ 2.02
CHMP3-207ENST00000485465 KDM5BQ9UGL1 1544 aa27.65■■■□□ 2.02
CHMP3-207ENST00000485465 ATP10BO94823 1461 aa27.64■■■□□ 2.02
CHMP3-207ENST00000485465 CCDC18Q5T9S5 1454 aa27.63■■■□□ 2.01
CHMP3-207ENST00000485465 NPM1P06748 294 aaKnown RBP eCLIP27.62■■■□□ 2.01
CHMP3-207ENST00000485465 CDK13Q14004 1512 aaKnown RBP27.61■■■□□ 2.01
CHMP3-207ENST00000485465 LRRIQ1Q96JM4 1722 aa27.61■■■□□ 2.01
CHMP3-207ENST00000485465 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.59■■■□□ 2.01
CHMP3-207ENST00000485465 HNRNPUL2Q1KMD3 747 aaKnown RBP27.59■■■□□ 2.01
CHMP3-207ENST00000485465 APLP2Q06481 763 aa27.58■■■□□ 2.01
CHMP3-207ENST00000485465 ZCCHC11Q5TAX3 1644 aaKnown RBP27.58■■■□□ 2.01
CHMP3-207ENST00000485465 MAP3K1Q13233 1512 aa27.55■■■□□ 2
CHMP3-207ENST00000485465 TIAM1Q13009 1591 aa27.52■■■□□ 2
CHMP3-207ENST00000485465 CDK11AQ9UQ88 783 aaPredicted RBP27.51■■□□□ 1.99
CHMP3-207ENST00000485465 CFAP43Q8NDM7 1665 aa27.5■■□□□ 1.99
CHMP3-207ENST00000485465 PLEKHD1A6NEE1 506 aa27.48■■□□□ 1.99
CHMP3-207ENST00000485465 ASXL2Q76L83 1435 aa27.45■■□□□ 1.98
CHMP3-207ENST00000485465 KANK4Q5T7N3 995 aaPredicted RBP27.44■■□□□ 1.98
CHMP3-207ENST00000485465 MAPKBP1O60336 1514 aa27.44■■□□□ 1.98
CHMP3-207ENST00000485465 MAGI3Q5TCQ9 1506 aa27.43■■□□□ 1.98
CHMP3-207ENST00000485465 MTUS2Q5JR59 1369 aa27.42■■□□□ 1.98
CHMP3-207ENST00000485465 LRRC9Q6ZRR7 1453 aa27.42■■□□□ 1.98
CHMP3-207ENST00000485465 TROQ12816 1431 aaPredicted RBP27.41■■□□□ 1.98
CHMP3-207ENST00000485465 WDR7Q9Y4E6 1490 aa27.4■■□□□ 1.98
CHMP3-207ENST00000485465 EHBP1L1Q8N3D4 1523 aa27.36■■□□□ 1.97
CHMP3-207ENST00000485465 KCNH8Q96L42 1107 aa27.34■■□□□ 1.97
CHMP3-207ENST00000485465 PPARGC1BQ86YN6 1023 aaKnown RBP27.33■■□□□ 1.97
CHMP3-207ENST00000485465 KIF14Q15058 1648 aa27.27■■□□□ 1.96
CHMP3-207ENST00000485465 SUPT6HQ7KZ85 1726 aaKnown RBP27.24■■□□□ 1.95
CHMP3-207ENST00000485465 ABCC10Q5T3U5 1492 aa27.24■■□□□ 1.95
CHMP3-207ENST00000485465 NCOA2Q15596 1464 aa27.23■■□□□ 1.95
CHMP3-207ENST00000485465 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP27.21■■□□□ 1.95
CHMP3-207ENST00000485465 DIP2BQ9P265 1576 aa27.2■■□□□ 1.94
CHMP3-207ENST00000485465 GLI2P10070 1586 aa27.19■■□□□ 1.94
CHMP3-207ENST00000485465 FAM69CQ0P6D2 419 aa27.19■■□□□ 1.94
CHMP3-207ENST00000485465 ABCA9Q8IUA7 1624 aa27.16■■□□□ 1.94
CHMP3-207ENST00000485465 TTC37Q6PGP7 1564 aa27.16■■□□□ 1.94
CHMP3-207ENST00000485465 CCNB3Q8WWL7 1395 aa27.15■■□□□ 1.94
CHMP3-207ENST00000485465 PHLDB1Q86UU1 1377 aa27.12■■□□□ 1.93
CHMP3-207ENST00000485465 GPATCH8Q9UKJ3 1502 aaKnown RBP27.11■■□□□ 1.93
CHMP3-207ENST00000485465 CD109Q6YHK3 1445 aa27.1■■□□□ 1.93
CHMP3-207ENST00000485465 KIF13AQ9H1H9 1805 aa27.09■■□□□ 1.93
CHMP3-207ENST00000485465 TRHP20396 242 aaPredicted RBP27.08■■□□□ 1.93
CHMP3-207ENST00000485465 MAP3K4Q9Y6R4 1608 aa27.08■■□□□ 1.93
CHMP3-207ENST00000485465 PLCH2O75038 1416 aa27.07■■□□□ 1.92
CHMP3-207ENST00000485465 MYOM3Q5VTT5 1437 aa27.07■■□□□ 1.92
CHMP3-207ENST00000485465 CDC42BPAQ5VT25 1732 aa27.05■■□□□ 1.92
CHMP3-207ENST00000485465 MYO5CQ9NQX4 1742 aa27.04■■□□□ 1.92
CHMP3-207ENST00000485465 PREX2Q70Z35 1606 aa27.03■■□□□ 1.92
CHMP3-207ENST00000485465 CFDP1Q9UEE9 299 aaPredicted RBP27.03■■□□□ 1.92
CHMP3-207ENST00000485465 ITSN2Q9NZM3 1697 aa27.02■■□□□ 1.92
CHMP3-207ENST00000485465 ARAP3Q8WWN8 1544 aa27.01■■□□□ 1.91
CHMP3-207ENST00000485465 MIA2Q96PC5 1412 aa26.99■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms