RNA–Protein interactions for RNA: ENST00000485465.1

CHMP3-207, Transcript of charged multivesicular body protein 3, humanhuman

TSL 3

Gene CHMP3, Length 920 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-207ENST00000485465 NISCHQ9Y2I1 1504 aa41.46■■■■■ 4.23
CHMP3-207ENST00000485465 CCDC180Q9P1Z9 1646 aa36.52■■■■□ 3.44
CHMP3-207ENST00000485465 ABCC9O60706 1549 aa35.17■■■■□ 3.22
CHMP3-207ENST00000485465 ZCCHC6Q5VYS8 1495 aaKnown RBP34.66■■■■□ 3.14
CHMP3-207ENST00000485465 DCAF8L2P0C7V8 631 aa34.43■■■■□ 3.1
CHMP3-207ENST00000485465 DCAF1Q9Y4B6 1507 aa34.32■■■■□ 3.08
CHMP3-207ENST00000485465 MYO15BQ96JP2 1530 aa34.22■■■■□ 3.07
CHMP3-207ENST00000485465 NACADO15069 1562 aa34.22■■■■□ 3.07
CHMP3-207ENST00000485465 RB1CC1Q8TDY2 1594 aa34.09■■■■□ 3.05
CHMP3-207ENST00000485465 SCRIBQ14160 1630 aa33.42■■■□□ 2.94
CHMP3-207ENST00000485465 UNC13AQ9UPW8 1703 aa33.29■■■□□ 2.92
CHMP3-207ENST00000485465 SHROOM4Q9ULL8 1493 aa33.18■■■□□ 2.9
CHMP3-207ENST00000485465 BICRAQ9NZM4 1560 aa33.04■■■□□ 2.88
CHMP3-207ENST00000485465 PABPN1Q86U42 306 aaKnown RBP eCLIP33.01■■■□□ 2.87
CHMP3-207ENST00000485465 CECR2Q9BXF3 1484 aa32.24■■■□□ 2.75
CHMP3-207ENST00000485465 EIF4G1Q04637 1599 aaKnown RBP32.11■■■□□ 2.73
CHMP3-207ENST00000485465 BAZ1AQ9NRL2 1556 aaPredicted RBP32.07■■■□□ 2.72
CHMP3-207ENST00000485465 SMARCA4P51532 1647 aa32.01■■■□□ 2.72
CHMP3-207ENST00000485465 MROH2BQ7Z745 1585 aa31.98■■■□□ 2.71
CHMP3-207ENST00000485465 RSF1Q96T23 1441 aaPredicted RBP31.85■■■□□ 2.69
CHMP3-207ENST00000485465 CC2D2AQ9P2K1 1620 aa31.82■■■□□ 2.69
CHMP3-207ENST00000485465 DNAJC5BQ9UF47 199 aa31.73■■■□□ 2.67
CHMP3-207ENST00000485465 ATAD2BQ9ULI0 1458 aa31.7■■■□□ 2.66
CHMP3-207ENST00000485465 PEG3Q9GZU2 1588 aa31.68■■■□□ 2.66
CHMP3-207ENST00000485465 SMARCA2P51531 1590 aa31.67■■■□□ 2.66
CHMP3-207ENST00000485465 WIZO95785 1651 aa31.64■■■□□ 2.66
CHMP3-207ENST00000485465 NCAPD3P42695 1498 aa31.59■■■□□ 2.65
CHMP3-207ENST00000485465 SUPT5HO00267 1087 aaKnown RBP31.56■■■□□ 2.64
CHMP3-207ENST00000485465 BAZ1BQ9UIG0 1483 aaKnown RBP31.46■■■□□ 2.63
CHMP3-207ENST00000485465 HMGXB3Q12766 1538 aa31.46■■■□□ 2.63
CHMP3-207ENST00000485465 TOP2AP11388 1531 aaKnown RBP31.34■■■□□ 2.61
CHMP3-207ENST00000485465 CCDC88BA6NC98 1476 aa31.01■■■□□ 2.55
CHMP3-207ENST00000485465 CADPSQ9ULU8 1353 aa30.71■■■□□ 2.51
CHMP3-207ENST00000485465 CFTRP13569 1480 aa30.65■■■□□ 2.5
CHMP3-207ENST00000485465 NESP48681 1621 aa30.63■■■□□ 2.49
CHMP3-207ENST00000485465 LAMC3Q9Y6N6 1575 aa30.62■■■□□ 2.49
CHMP3-207ENST00000485465 PDS5BQ9NTI5 1447 aa30.42■■■□□ 2.46
CHMP3-207ENST00000485465 PRDM2Q13029 1718 aa30.4■■■□□ 2.46
CHMP3-207ENST00000485465 FANCD2Q9BXW9 1451 aa30.34■■■□□ 2.45
CHMP3-207ENST00000485465 ERCC6Q03468 1493 aa30.25■■■□□ 2.43
CHMP3-207ENST00000485465 KIF21AQ7Z4S6 1674 aa30.24■■■□□ 2.43
CHMP3-207ENST00000485465 CEP164Q9UPV0 1460 aa30.24■■■□□ 2.43
CHMP3-207ENST00000485465 MRC2Q9UBG0 1479 aa30.06■■■□□ 2.4
CHMP3-207ENST00000485465 ABCC8Q09428 1581 aa30.05■■■□□ 2.4
CHMP3-207ENST00000485465 WRNQ14191 1432 aaPredicted RBP eCLIP30■■■□□ 2.39
CHMP3-207ENST00000485465 URB2Q14146 1524 aaKnown RBP30■■■□□ 2.39
CHMP3-207ENST00000485465 THOC2Q8NI27 1593 aaKnown RBP29.99■■■□□ 2.39
CHMP3-207ENST00000485465 CUX1P39880 1505 aa29.95■■■□□ 2.38
CHMP3-207ENST00000485465 DNMBPQ6XZF7 1577 aa29.94■■■□□ 2.38
CHMP3-207ENST00000485465 WDR62O43379 1518 aa29.93■■■□□ 2.38
CHMP3-207ENST00000485465 TOPBP1Q92547 1522 aa29.93■■■□□ 2.38
CHMP3-207ENST00000485465 SYNJ1O43426 1573 aa29.88■■■□□ 2.37
CHMP3-207ENST00000485465 CHIC1Q5VXU3 224 aa29.85■■■□□ 2.37
CHMP3-207ENST00000485465 TOP2BQ02880 1626 aa29.85■■■□□ 2.37
CHMP3-207ENST00000485465 BIVM-ERCC5R4GMW8 1640 aa29.83■■■□□ 2.37
CHMP3-207ENST00000485465 TRIM41Q8WV44 630 aa29.78■■■□□ 2.36
CHMP3-207ENST00000485465 FGD5Q6ZNL6 1462 aa29.74■■■□□ 2.35
CHMP3-207ENST00000485465 POLA1P09884 1462 aaPredicted RBP29.72■■■□□ 2.35
CHMP3-207ENST00000485465 CUX2O14529 1486 aa29.69■■■□□ 2.34
CHMP3-207ENST00000485465 SOGA1O94964 1423 aa29.63■■■□□ 2.33
CHMP3-207ENST00000485465 RAD54L2Q9Y4B4 1467 aa29.6■■■□□ 2.33
CHMP3-207ENST00000485465 IFT140Q96RY7 1462 aa29.58■■■□□ 2.33
CHMP3-207ENST00000485465 TARBP1Q13395 1621 aaKnown RBP29.54■■■□□ 2.32
CHMP3-207ENST00000485465 ABCA10Q8WWZ4 1543 aa29.49■■■□□ 2.31
CHMP3-207ENST00000485465 WDR97A6NE52 1622 aa29.43■■■□□ 2.3
CHMP3-207ENST00000485465 ZNF608Q9ULD9 1512 aaPredicted RBP29.4■■■□□ 2.3
CHMP3-207ENST00000485465 TDRD9Q8NDG6 1382 aaKnown RBP29.39■■■□□ 2.29
CHMP3-207ENST00000485465 KIF27Q86VH2 1401 aa29.33■■■□□ 2.29
CHMP3-207ENST00000485465 AQRO60306 1485 aaKnown RBP eCLIP29.33■■■□□ 2.29
CHMP3-207ENST00000485465 ABCA5Q8WWZ7 1642 aa29.29■■■□□ 2.28
CHMP3-207ENST00000485465 GAPVD1Q14C86 1478 aa29.29■■■□□ 2.28
CHMP3-207ENST00000485465 EIF4G3O43432 1585 aaKnown RBP29.28■■■□□ 2.28
CHMP3-207ENST00000485465 RUSC2Q8N2Y8 1516 aa29.28■■■□□ 2.28
CHMP3-207ENST00000485465 EEA1Q15075 1411 aa29.2■■■□□ 2.27
CHMP3-207ENST00000485465 GRIN2BQ13224 1484 aa29.19■■■□□ 2.26
CHMP3-207ENST00000485465 FAM9AQ8IZU1 332 aaPredicted RBP29.16■■■□□ 2.26
CHMP3-207ENST00000485465 IGF1RP08069 1367 aa29.15■■■□□ 2.26
CHMP3-207ENST00000485465 PBRM1Q86U86 1689 aa29.14■■■□□ 2.26
CHMP3-207ENST00000485465 ERICH3Q5RHP9 1530 aa29.14■■■□□ 2.25
CHMP3-207ENST00000485465 CSRNP3Q8WYN3 585 aa29.1■■■□□ 2.25
CHMP3-207ENST00000485465 SNAPC4Q5SXM2 1469 aa29.06■■■□□ 2.24
CHMP3-207ENST00000485465 MAGI1Q96QZ7 1491 aaPredicted RBP29.04■■■□□ 2.24
CHMP3-207ENST00000485465 CARMIL1Q5VZK9 1371 aa28.99■■■□□ 2.23
CHMP3-207ENST00000485465 CUL7Q14999 1698 aa28.99■■■□□ 2.23
CHMP3-207ENST00000485465 FHAD1B1AJZ9 1412 aa28.97■■■□□ 2.23
CHMP3-207ENST00000485465 ADAMTS12P58397 1594 aa28.96■■■□□ 2.23
CHMP3-207ENST00000485465 PRXQ9BXM0 1461 aa28.93■■■□□ 2.22
CHMP3-207ENST00000485465 SYNJ2O15056 1496 aa28.91■■■□□ 2.22
CHMP3-207ENST00000485465 CHMP7Q8WUX9 453 aaPredicted RBP28.89■■■□□ 2.22
CHMP3-207ENST00000485465 RAPGEF2Q9Y4G8 1499 aa28.87■■■□□ 2.21
CHMP3-207ENST00000485465 FBLN2P98095 1184 aa28.86■■■□□ 2.21
CHMP3-207ENST00000485465 KIF21BO75037 1637 aa28.83■■■□□ 2.21
CHMP3-207ENST00000485465 GRIN2AQ12879 1464 aa28.81■■■□□ 2.2
CHMP3-207ENST00000485465 CHD1O14646 1710 aa28.77■■■□□ 2.2
CHMP3-207ENST00000485465 GOLGA3Q08378 1498 aa28.73■■■□□ 2.19
CHMP3-207ENST00000485465 EHMT2Q96KQ7 1210 aa28.73■■■□□ 2.19
CHMP3-207ENST00000485465 NUP160Q12769 1436 aa28.66■■■□□ 2.18
CHMP3-207ENST00000485465 LOC105371045A0A1W2PR82 267 aa28.64■■■□□ 2.18
CHMP3-207ENST00000485465 CEP170Q5SW79 1584 aa28.63■■■□□ 2.17
CHMP3-207ENST00000485465 UBTFP17480 764 aaKnown RBP28.63■■■□□ 2.17
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms