RNA–Protein interactions for RNA: ENST00000483275.1

VARS-226, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 450 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-226ENST00000483275 CUL7Q14999 1698 aa24.56■■□□□ 1.52
VARS-226ENST00000483275 ADCY10Q96PN6 1610 aa24.53■■□□□ 1.52
VARS-226ENST00000483275 IGF1RP08069 1367 aa24.5■■□□□ 1.51
VARS-226ENST00000483275 KIF27Q86VH2 1401 aa24.5■■□□□ 1.51
VARS-226ENST00000483275 AEBP2Q6ZN18 517 aaPredicted RBP24.49■■□□□ 1.51
VARS-226ENST00000483275 KIAA0586Q9BVV6 1533 aa24.46■■□□□ 1.51
VARS-226ENST00000483275 DIP2BQ9P265 1576 aa24.43■■□□□ 1.5
VARS-226ENST00000483275 MAPKBP1O60336 1514 aa24.41■■□□□ 1.5
VARS-226ENST00000483275 ABCC10Q5T3U5 1492 aa24.39■■□□□ 1.5
VARS-226ENST00000483275 FAM69CQ0P6D2 419 aa24.37■■□□□ 1.49
VARS-226ENST00000483275 TSPOAP1O95153 1857 aa24.36■■□□□ 1.49
VARS-226ENST00000483275 TTBK1Q5TCY1 1321 aaPredicted RBP24.35■■□□□ 1.49
VARS-226ENST00000483275 CARMIL1Q5VZK9 1371 aa24.34■■□□□ 1.49
VARS-226ENST00000483275 NPM1P06748 294 aaKnown RBP eCLIP24.34■■□□□ 1.49
VARS-226ENST00000483275 IQGAP2Q13576 1575 aa24.31■■□□□ 1.48
VARS-226ENST00000483275 PTPRGP23470 1445 aa24.27■■□□□ 1.48
VARS-226ENST00000483275 KDM6BO15054 1643 aa24.24■■□□□ 1.47
VARS-226ENST00000483275 CARMIL2Q6F5E8 1435 aa24.2■■□□□ 1.46
VARS-226ENST00000483275 TNIKQ9UKE5 1360 aa24.19■■□□□ 1.46
VARS-226ENST00000483275 DISP1Q96F81 1524 aa24.19■■□□□ 1.46
VARS-226ENST00000483275 ABCC2Q92887 1545 aa24.18■■□□□ 1.46
VARS-226ENST00000483275 PPRC1Q5VV67 1664 aaKnown RBP24.14■■□□□ 1.45
VARS-226ENST00000483275 ASXL2Q76L83 1435 aa24.13■■□□□ 1.45
VARS-226ENST00000483275 RAPGEF2Q9Y4G8 1499 aa24.13■■□□□ 1.45
VARS-226ENST00000483275 KIAA0556O60303 1618 aa24.11■■□□□ 1.45
VARS-226ENST00000483275 UGGT2Q9NYU1 1516 aa24.1■■□□□ 1.45
VARS-226ENST00000483275 CTTNBP2Q8WZ74 1663 aa24.08■■□□□ 1.45
VARS-226ENST00000483275 UHRF1BP1LA0JNW5 1464 aa24.08■■□□□ 1.45
VARS-226ENST00000483275 UACAQ9BZF9 1416 aa24.08■■□□□ 1.44
VARS-226ENST00000483275 ZCCHC11Q5TAX3 1644 aaKnown RBP24.07■■□□□ 1.44
VARS-226ENST00000483275 PLB1Q6P1J6 1458 aa24.05■■□□□ 1.44
VARS-226ENST00000483275 GLI2P10070 1586 aa24.03■■□□□ 1.44
VARS-226ENST00000483275 KDM5BQ9UGL1 1544 aa24■■□□□ 1.43
VARS-226ENST00000483275 MAP3K4Q9Y6R4 1608 aa23.99■■□□□ 1.43
VARS-226ENST00000483275 KDM4FA0A1W2PPD8 638 aa23.98■■□□□ 1.43
VARS-226ENST00000483275 EPRSP07814 1512 aaKnown RBP23.98■■□□□ 1.43
VARS-226ENST00000483275 COL17A1Q9UMD9 1497 aaPredicted RBP23.91■■□□□ 1.42
VARS-226ENST00000483275 WDR7Q9Y4E6 1490 aa23.87■■□□□ 1.41
VARS-226ENST00000483275 ABCA8O94911 1581 aa23.86■■□□□ 1.41
VARS-226ENST00000483275 PRXQ9BXM0 1461 aa23.85■■□□□ 1.41
VARS-226ENST00000483275 ADGRL1O94910 1474 aa23.83■■□□□ 1.41
VARS-226ENST00000483275 GOLGA3Q08378 1498 aa23.83■■□□□ 1.41
VARS-226ENST00000483275 TEX14Q8IWB6 1497 aa23.82■■□□□ 1.4
VARS-226ENST00000483275 CFAP43Q8NDM7 1665 aa23.77■■□□□ 1.4
VARS-226ENST00000483275 ARID3CA6NKF2 412 aa23.76■■□□□ 1.39
VARS-226ENST00000483275 KCNH8Q96L42 1107 aa23.74■■□□□ 1.39
VARS-226ENST00000483275 P3H3Q8IVL6 736 aa23.73■■□□□ 1.39
VARS-226ENST00000483275 CD109Q6YHK3 1445 aa23.7■■□□□ 1.38
VARS-226ENST00000483275 MAGI3Q5TCQ9 1506 aa23.68■■□□□ 1.38
VARS-226ENST00000483275 SAMD9Q5K651 1589 aa23.67■■□□□ 1.38
VARS-226ENST00000483275 KIF21BO75037 1637 aa23.63■■□□□ 1.37
VARS-226ENST00000483275 ATP10BO94823 1461 aa23.62■■□□□ 1.37
VARS-226ENST00000483275 RAPGEF6Q8TEU7 1601 aa23.61■■□□□ 1.37
VARS-226ENST00000483275 RANGAP1P46060 587 aaPredicted RBP23.59■■□□□ 1.37
VARS-226ENST00000483275 HECW2Q9P2P5 1572 aa23.58■■□□□ 1.37
VARS-226ENST00000483275 CSRNP3Q8WYN3 585 aa23.58■■□□□ 1.37
VARS-226ENST00000483275 ABCA9Q8IUA7 1624 aa23.57■■□□□ 1.36
VARS-226ENST00000483275 FHOD3Q2V2M9 1422 aa23.52■■□□□ 1.36
VARS-226ENST00000483275 FAM9AQ8IZU1 332 aaPredicted RBP23.51■■□□□ 1.35
VARS-226ENST00000483275 NUP153P49790 1475 aaKnown RBP23.5■■□□□ 1.35
VARS-226ENST00000483275 ARAP3Q8WWN8 1544 aa23.49■■□□□ 1.35
VARS-226ENST00000483275 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.46■■□□□ 1.35
VARS-226ENST00000483275 HNRNPUL2Q1KMD3 747 aaKnown RBP23.46■■□□□ 1.35
VARS-226ENST00000483275 FRMPD1Q5SYB0 1578 aa23.45■■□□□ 1.34
VARS-226ENST00000483275 EEA1Q15075 1411 aa23.44■■□□□ 1.34
VARS-226ENST00000483275 RAPGEF3O95398 923 aa23.4■■□□□ 1.34
VARS-226ENST00000483275 ILDR1Q86SU0 546 aaPredicted RBP23.38■■□□□ 1.33
VARS-226ENST00000483275 EHMT2Q96KQ7 1210 aa23.38■■□□□ 1.33
VARS-226ENST00000483275 NEO1Q92859 1461 aa23.37■■□□□ 1.33
VARS-226ENST00000483275 TTC37Q6PGP7 1564 aa23.36■■□□□ 1.33
VARS-226ENST00000483275 ADAMTSL3P82987 1691 aa23.35■■□□□ 1.33
VARS-226ENST00000483275 EFCAB5A4FU69 1503 aa23.35■■□□□ 1.33
VARS-226ENST00000483275 CDK13Q14004 1512 aaKnown RBP23.34■■□□□ 1.33
VARS-226ENST00000483275 RICTORQ6R327 1708 aa23.33■■□□□ 1.33
VARS-226ENST00000483275 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.32■■□□□ 1.32
VARS-226ENST00000483275 BCORL1Q5H9F3 1711 aa23.31■■□□□ 1.32
VARS-226ENST00000483275 MADDQ8WXG6 1647 aa23.3■■□□□ 1.32
VARS-226ENST00000483275 PHLDB1Q86UU1 1377 aa23.3■■□□□ 1.32
VARS-226ENST00000483275 ARHGEF40Q8TER5 1519 aa23.3■■□□□ 1.32
VARS-226ENST00000483275 PTPRMP28827 1452 aa23.28■■□□□ 1.32
VARS-226ENST00000483275 CFAP74Q9C0B2 1584 aa23.27■■□□□ 1.32
VARS-226ENST00000483275 FANCAO15360 1455 aa23.26■■□□□ 1.31
VARS-226ENST00000483275 PLEKHD1A6NEE1 506 aa23.25■■□□□ 1.31
VARS-226ENST00000483275 SIGLEC1Q9BZZ2 1709 aa23.25■■□□□ 1.31
VARS-226ENST00000483275 RIMS1Q86UR5 1692 aaKnown RBP23.24■■□□□ 1.31
VARS-226ENST00000483275 ARID4BQ4LE39 1312 aaPredicted RBP23.23■■□□□ 1.31
VARS-226ENST00000483275 AKNAQ7Z591 1439 aa23.23■■□□□ 1.31
VARS-226ENST00000483275 DENND4BO75064 1496 aaPredicted RBP23.23■■□□□ 1.31
VARS-226ENST00000483275 HECW1Q76N89 1606 aa23.19■■□□□ 1.3
VARS-226ENST00000483275 UBTFP17480 764 aaKnown RBP23.17■■□□□ 1.3
VARS-226ENST00000483275 ZMYM4Q5VZL5 1548 aa23.17■■□□□ 1.3
VARS-226ENST00000483275 ARHGAP35Q9NRY4 1499 aa23.17■■□□□ 1.3
VARS-226ENST00000483275 LRRIQ1Q96JM4 1722 aa23.16■■□□□ 1.3
VARS-226ENST00000483275 KIF14Q15058 1648 aa23.16■■□□□ 1.3
VARS-226ENST00000483275 ATP1B4Q9UN42 357 aaPredicted RBP23.16■■□□□ 1.3
VARS-226ENST00000483275 ZFYVE16Q7Z3T8 1539 aa23.16■■□□□ 1.3
VARS-226ENST00000483275 YEATS2Q9ULM3 1422 aa23.16■■□□□ 1.3
VARS-226ENST00000483275 MYO5CQ9NQX4 1742 aa23.15■■□□□ 1.3
VARS-226ENST00000483275 PCF11O94913 1555 aaKnown RBP23.13■■□□□ 1.29
VARS-226ENST00000483275 PLPPR3Q6T4P5 718 aa23.11■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms