RNA–Protein interactions for RNA: ENST00000482470.5

CALD1-220, Transcript of caldesmon 1, humanhuman

TSL 2

Gene CALD1, Length 3,941 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CALD1-220ENST00000482470 IGF1RP08069 1367 aa12.9□□□□□ -0.34
CALD1-220ENST00000482470 RAB3GAP2Q9H2M9 1393 aa12.87□□□□□ -0.35
CALD1-220ENST00000482470 DHX57Q6P158 1386 aaKnown RBP12.86□□□□□ -0.35
CALD1-220ENST00000482470 FHOD3Q2V2M9 1422 aa12.86□□□□□ -0.35
CALD1-220ENST00000482470 ARAP1Q96P48 1450 aa12.85□□□□□ -0.35
CALD1-220ENST00000482470 CLSPNQ9HAW4 1339 aa12.85□□□□□ -0.35
CALD1-220ENST00000482470 RAD54L2Q9Y4B4 1467 aa12.83□□□□□ -0.36
CALD1-220ENST00000482470 MYT1LQ9UL68 1186 aa12.83□□□□□ -0.36
CALD1-220ENST00000482470 CUX1P39880 1505 aa12.83□□□□□ -0.36
CALD1-220ENST00000482470 FHAD1B1AJZ9 1412 aa12.83□□□□□ -0.36
CALD1-220ENST00000482470 FGD5Q6ZNL6 1462 aa12.82□□□□□ -0.36
CALD1-220ENST00000482470 CFTRP13569 1480 aa12.82□□□□□ -0.36
CALD1-220ENST00000482470 FANCD2Q9BXW9 1451 aa12.82□□□□□ -0.36
CALD1-220ENST00000482470 PRXQ9BXM0 1461 aa12.81□□□□□ -0.36
CALD1-220ENST00000482470 SETD5Q9C0A6 1442 aa12.8□□□□□ -0.36
CALD1-220ENST00000482470 FKBP8Q14318 412 aa12.8□□□□□ -0.36
CALD1-220ENST00000482470 CHMP7Q8WUX9 453 aaPredicted RBP12.8□□□□□ -0.36
CALD1-220ENST00000482470 TOP2BQ02880 1626 aa12.8□□□□□ -0.36
CALD1-220ENST00000482470 DNAJC5BQ9UF47 199 aa12.8□□□□□ -0.36
CALD1-220ENST00000482470 CDK11AQ9UQ88 783 aaPredicted RBP12.8□□□□□ -0.36
CALD1-220ENST00000482470 KCNH8Q96L42 1107 aa12.78□□□□□ -0.36
CALD1-220ENST00000482470 PEG3Q9GZU2 1588 aa12.77□□□□□ -0.36
CALD1-220ENST00000482470 ARHGAP35Q9NRY4 1499 aa12.77□□□□□ -0.37
CALD1-220ENST00000482470 FOXD1Q16676 465 aa12.76□□□□□ -0.37
CALD1-220ENST00000482470 NESP48681 1621 aa12.75□□□□□ -0.37
CALD1-220ENST00000482470 HNRNPUQ00839 825 aaKnown RBP eCLIP12.75□□□□□ -0.37
CALD1-220ENST00000482470 PHLDB1Q86UU1 1377 aa12.74□□□□□ -0.37
CALD1-220ENST00000482470 PRKCSHP14314 528 aaPredicted RBP12.73□□□□□ -0.37
CALD1-220ENST00000482470 SLC4A1APQ9BWU0 796 aaKnown RBP12.73□□□□□ -0.37
CALD1-220ENST00000482470 FAM9BQ8IZU0 186 aa12.72□□□□□ -0.37
CALD1-220ENST00000482470 SENP3-EIF4A1A0A087X0R7 540 aa12.72□□□□□ -0.37
CALD1-220ENST00000482470 HMGXB3Q12766 1538 aa12.7□□□□□ -0.38
CALD1-220ENST00000482470 ERICH3Q5RHP9 1530 aa12.7□□□□□ -0.38
CALD1-220ENST00000482470 IRX6P78412 446 aaPredicted RBP12.7□□□□□ -0.38
CALD1-220ENST00000482470 ERICH6Q7L0X2 663 aa12.7□□□□□ -0.38
CALD1-220ENST00000482470 PDS5BQ9NTI5 1447 aa12.69□□□□□ -0.38
CALD1-220ENST00000482470 KDM2AQ9Y2K7 1162 aa12.69□□□□□ -0.38
CALD1-220ENST00000482470 PPP1R15AO75807 674 aaPredicted RBP12.68□□□□□ -0.38
CALD1-220ENST00000482470 CFDP1Q9UEE9 299 aaPredicted RBP12.67□□□□□ -0.38
CALD1-220ENST00000482470 EIF4G2P78344 907 aaKnown RBP eCLIP12.67□□□□□ -0.38
CALD1-220ENST00000482470 FMN1Q68DA7 1419 aa12.67□□□□□ -0.38
CALD1-220ENST00000482470 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.66□□□□□ -0.382e-7■■■■□ 20.4
CALD1-220ENST00000482470 SUPT16HQ9Y5B9 1047 aaKnown RBP12.66□□□□□ -0.38
CALD1-220ENST00000482470 CC2D2AQ9P2K1 1620 aa12.64□□□□□ -0.39
CALD1-220ENST00000482470 RRBP1Q9P2E9 1410 aaKnown RBP12.64□□□□□ -0.39
CALD1-220ENST00000482470 LRRC9Q6ZRR7 1453 aa12.64□□□□□ -0.39
CALD1-220ENST00000482470 TSPY4P0CV99 314 aa12.62□□□□□ -0.39
CALD1-220ENST00000482470 TSPY10P0CW01 314 aa12.62□□□□□ -0.39
CALD1-220ENST00000482470 MRS2Q9HD23 443 aa12.62□□□□□ -0.39
CALD1-220ENST00000482470 PLEKHD1A6NEE1 506 aa12.62□□□□□ -0.39
CALD1-220ENST00000482470 POLA1P09884 1462 aaPredicted RBP12.6□□□□□ -0.39
CALD1-220ENST00000482470 SALL2Q9Y467 1007 aaPredicted RBP12.6□□□□□ -0.39
CALD1-220ENST00000482470 GAPVD1Q14C86 1478 aa12.6□□□□□ -0.39
CALD1-220ENST00000482470 HSPA5P11021 654 aaKnown RBP12.59□□□□□ -0.39
CALD1-220ENST00000482470 ERCC6Q03468 1493 aa12.59□□□□□ -0.39
CALD1-220ENST00000482470 MPHOSPH9Q99550 1183 aa12.59□□□□□ -0.39
CALD1-220ENST00000482470 TIMELESSQ9UNS1 1208 aa12.59□□□□□ -0.39
CALD1-220ENST00000482470 AQRO60306 1485 aaKnown RBP eCLIP12.59□□□□□ -0.395e-16■■□□□ 11.9
CALD1-220ENST00000482470 RGL3Q3MIN7 710 aa12.58□□□□□ -0.4
CALD1-220ENST00000482470 TOPBP1Q92547 1522 aa12.57□□□□□ -0.4
CALD1-220ENST00000482470 L3MBTL2Q969R5 705 aa12.56□□□□□ -0.4
CALD1-220ENST00000482470 ZNF644Q9H582 1327 aaPredicted RBP12.55□□□□□ -0.4
CALD1-220ENST00000482470 BIVM-ERCC5R4GMW8 1640 aa12.55□□□□□ -0.4
CALD1-220ENST00000482470 FGD6Q6ZV73 1430 aa12.54□□□□□ -0.4
CALD1-220ENST00000482470 CASKIN1Q8WXD9 1431 aa12.52□□□□□ -0.41
CALD1-220ENST00000482470 TIAM1Q13009 1591 aa12.51□□□□□ -0.41
CALD1-220ENST00000482470 CCDC18Q5T9S5 1454 aa12.51□□□□□ -0.41
CALD1-220ENST00000482470 PKD2Q13563 968 aa12.5□□□□□ -0.41
CALD1-220ENST00000482470 TMC1Q8TDI8 760 aa12.5□□□□□ -0.41
CALD1-220ENST00000482470 JPH4Q96JJ6 628 aa12.49□□□□□ -0.41
CALD1-220ENST00000482470 CARD11Q9BXL7 1154 aa12.47□□□□□ -0.41
CALD1-220ENST00000482470 NCOA2Q15596 1464 aa12.47□□□□□ -0.41
CALD1-220ENST00000482470 CCER2I3L3R5 266 aa12.46□□□□□ -0.41
CALD1-220ENST00000482470 MYOM3Q5VTT5 1437 aa12.46□□□□□ -0.41
CALD1-220ENST00000482470 DCAF11Q8TEB1 546 aa12.45□□□□□ -0.42
CALD1-220ENST00000482470 ANP32EQ9BTT0 268 aa12.45□□□□□ -0.42
CALD1-220ENST00000482470 ABCA10Q8WWZ4 1543 aa12.45□□□□□ -0.42
CALD1-220ENST00000482470 DNMBPQ6XZF7 1577 aa12.45□□□□□ -0.42
CALD1-220ENST00000482470 HNRNPMP52272 730 aaKnown RBP eCLIP12.45□□□□□ -0.42
CALD1-220ENST00000482470 FYCO1Q9BQS8 1478 aa12.44□□□□□ -0.42
CALD1-220ENST00000482470 PCF11O94913 1555 aaKnown RBP12.44□□□□□ -0.42
CALD1-220ENST00000482470 CHGAP10645 457 aaKnown RBP12.43□□□□□ -0.42
CALD1-220ENST00000482470 SENP3Q9H4L4 574 aaPredicted RBP12.43□□□□□ -0.42
CALD1-220ENST00000482470 WDR97A6NE52 1622 aa12.42□□□□□ -0.42
CALD1-220ENST00000482470 URB2Q14146 1524 aaKnown RBP12.42□□□□□ -0.42
CALD1-220ENST00000482470 UACAQ9BZF9 1416 aa12.41□□□□□ -0.42
CALD1-220ENST00000482470 NUP155O75694 1391 aa12.4□□□□□ -0.42
CALD1-220ENST00000482470 TSHZ2Q9NRE2 1034 aa12.38□□□□□ -0.43
CALD1-220ENST00000482470 CARMIL2Q6F5E8 1435 aa12.37□□□□□ -0.43
CALD1-220ENST00000482470 B4GALNT3Q6L9W6 998 aa12.37□□□□□ -0.43
CALD1-220ENST00000482470 EFCAB5A4FU69 1503 aa12.36□□□□□ -0.43
CALD1-220ENST00000482470 WASHC2AQ641Q2 1341 aa12.36□□□□□ -0.43
CALD1-220ENST00000482470 CCDC136Q96JN2 1154 aa12.35□□□□□ -0.43
CALD1-220ENST00000482470 NAIPQ13075 1403 aa12.35□□□□□ -0.43
CALD1-220ENST00000482470 PTPRKQ15262 1439 aa12.35□□□□□ -0.43
CALD1-220ENST00000482470 HFM1A2PYH4 1435 aa12.34□□□□□ -0.43
CALD1-220ENST00000482470 CDK13Q14004 1512 aaKnown RBP12.34□□□□□ -0.43
CALD1-220ENST00000482470 NBPF8Q3BBV2 869 aa12.33□□□□□ -0.43
CALD1-220ENST00000482470 GRIN2BQ13224 1484 aa12.33□□□□□ -0.44
CALD1-220ENST00000482470 ANKRD30AQ9BXX3 1397 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms