RNA–Protein interactions for RNA: ENST00000482171.5

SMPD4-218, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 2

Gene SMPD4, Length 4,298 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-218ENST00000482171 TSPY4P0CV99 314 aa15.71■□□□□ 0.11
SMPD4-218ENST00000482171 TSPY10P0CW01 314 aa15.71■□□□□ 0.11
SMPD4-218ENST00000482171 PDS5BQ9NTI5 1447 aa15.69■□□□□ 0.1
SMPD4-218ENST00000482171 SIN3AQ96ST3 1273 aa15.69■□□□□ 0.1
SMPD4-218ENST00000482171 PLEKHD1A6NEE1 506 aa15.69■□□□□ 0.1
SMPD4-218ENST00000482171 FKBP8Q14318 412 aa15.68■□□□□ 0.1
SMPD4-218ENST00000482171 NPM1P06748 294 aaKnown RBP eCLIP15.67■□□□□ 0.1
SMPD4-218ENST00000482171 CCNB3Q8WWL7 1395 aa15.66■□□□□ 0.1
SMPD4-218ENST00000482171 RTL5Q5HYW3 569 aaPredicted RBP15.66■□□□□ 0.1
SMPD4-218ENST00000482171 KDM2AQ9Y2K7 1162 aa15.66■□□□□ 0.1
SMPD4-218ENST00000482171 CFDP1Q9UEE9 299 aaPredicted RBP15.65■□□□□ 0.1
SMPD4-218ENST00000482171 CHGAP10645 457 aaKnown RBP15.64■□□□□ 0.09
SMPD4-218ENST00000482171 FHAD1B1AJZ9 1412 aa15.63■□□□□ 0.09
SMPD4-218ENST00000482171 FANCD2Q9BXW9 1451 aa15.62■□□□□ 0.09
SMPD4-218ENST00000482171 NCAPD3P42695 1498 aa15.6■□□□□ 0.09
SMPD4-218ENST00000482171 CLSPNQ9HAW4 1339 aa15.59■□□□□ 0.09
SMPD4-218ENST00000482171 FHOD3Q2V2M9 1422 aa15.58■□□□□ 0.09
SMPD4-218ENST00000482171 DAXXQ9UER7 740 aaPredicted RBP15.57■□□□□ 0.08
SMPD4-218ENST00000482171 SENP3Q9H4L4 574 aaPredicted RBP15.55■□□□□ 0.08
SMPD4-218ENST00000482171 BICRAQ9NZM4 1560 aa15.54■□□□□ 0.08
SMPD4-218ENST00000482171 RAD54L2Q9Y4B4 1467 aa15.54■□□□□ 0.08
SMPD4-218ENST00000482171 RGL3Q3MIN7 710 aa15.53■□□□□ 0.08
SMPD4-218ENST00000482171 PLPPR3Q6T4P5 718 aa15.53■□□□□ 0.08
SMPD4-218ENST00000482171 FAM9BQ8IZU0 186 aa15.53■□□□□ 0.08
SMPD4-218ENST00000482171 FGD5Q6ZNL6 1462 aa15.52■□□□□ 0.08
SMPD4-218ENST00000482171 IGF1RP08069 1367 aa15.51■□□□□ 0.07
SMPD4-218ENST00000482171 ANP32EQ9BTT0 268 aa15.51■□□□□ 0.07
SMPD4-218ENST00000482171 HNRNPUQ00839 825 aaKnown RBP eCLIP15.51■□□□□ 0.07
SMPD4-218ENST00000482171 SYNJ1O43426 1573 aa15.49■□□□□ 0.07
SMPD4-218ENST00000482171 DNAJC5BQ9UF47 199 aa15.48■□□□□ 0.07
SMPD4-218ENST00000482171 SALL2Q9Y467 1007 aaPredicted RBP15.47■□□□□ 0.07
SMPD4-218ENST00000482171 NESP48681 1621 aa15.47■□□□□ 0.07
SMPD4-218ENST00000482171 EIF4G2P78344 907 aaKnown RBP eCLIP15.47■□□□□ 0.07
SMPD4-218ENST00000482171 FOXD1Q16676 465 aa15.46■□□□□ 0.07
SMPD4-218ENST00000482171 ARHGAP35Q9NRY4 1499 aa15.45■□□□□ 0.06
SMPD4-218ENST00000482171 SENP3-EIF4A1A0A087X0R7 540 aa15.44■□□□□ 0.06
SMPD4-218ENST00000482171 RAB3GAP2Q9H2M9 1393 aa15.44■□□□□ 0.06
SMPD4-218ENST00000482171 FMN1Q68DA7 1419 aa15.43■□□□□ 0.06
SMPD4-218ENST00000482171 STAG3Q9UJ98 1225 aa15.42■□□□□ 0.06
SMPD4-218ENST00000482171 SETD5Q9C0A6 1442 aa15.42■□□□□ 0.06
SMPD4-218ENST00000482171 SUPT16HQ9Y5B9 1047 aaKnown RBP15.42■□□□□ 0.06
SMPD4-218ENST00000482171 CFTRP13569 1480 aa15.41■□□□□ 0.06
SMPD4-218ENST00000482171 ESF1Q9H501 851 aaKnown RBP15.4■□□□□ 0.06
SMPD4-218ENST00000482171 MRS2Q9HD23 443 aa15.4■□□□□ 0.06
SMPD4-218ENST00000482171 JPH4Q96JJ6 628 aa15.39■□□□□ 0.05
SMPD4-218ENST00000482171 CC2D2AQ9P2K1 1620 aa15.37■□□□□ 0.05
SMPD4-218ENST00000482171 IRX6P78412 446 aaPredicted RBP15.37■□□□□ 0.05
SMPD4-218ENST00000482171 BCL11AQ9H165 835 aa15.36■□□□□ 0.05
SMPD4-218ENST00000482171 GAPVD1Q14C86 1478 aa15.35■□□□□ 0.05
SMPD4-218ENST00000482171 TMC1Q8TDI8 760 aa15.35■□□□□ 0.05
SMPD4-218ENST00000482171 AQRO60306 1485 aaKnown RBP eCLIP15.35■□□□□ 0.055e-7■■■■□ 25.6
SMPD4-218ENST00000482171 NBR1Q14596 966 aa15.34■□□□□ 0.05
SMPD4-218ENST00000482171 CARMIL2Q6F5E8 1435 aa15.34■□□□□ 0.05
SMPD4-218ENST00000482171 UNC13AQ9UPW8 1703 aa15.33■□□□□ 0.04
SMPD4-218ENST00000482171 CUX1P39880 1505 aa15.32■□□□□ 0.04
SMPD4-218ENST00000482171 KIF21BO75037 1637 aa15.32■□□□□ 0.04
SMPD4-218ENST00000482171 CARD11Q9BXL7 1154 aa15.31■□□□□ 0.04
SMPD4-218ENST00000482171 ANP32AP39687 249 aaKnown RBP15.31■□□□□ 0.04
SMPD4-218ENST00000482171 NPM2Q86SE8 214 aaKnown RBP15.3■□□□□ 0.04
SMPD4-218ENST00000482171 HMGXB3Q12766 1538 aa15.3■□□□□ 0.04
SMPD4-218ENST00000482171 PKD2Q13563 968 aa15.29■□□□□ 0.04
SMPD4-218ENST00000482171 ARAP1Q96P48 1450 aa15.28■□□□□ 0.04
SMPD4-218ENST00000482171 HNRNPMP52272 730 aaKnown RBP eCLIP15.27■□□□□ 0.04
SMPD4-218ENST00000482171 MPHOSPH9Q99550 1183 aa15.27■□□□□ 0.04
SMPD4-218ENST00000482171 DCAF11Q8TEB1 546 aa15.27■□□□□ 0.03
SMPD4-218ENST00000482171 DHX57Q6P158 1386 aaKnown RBP15.26■□□□□ 0.03
SMPD4-218ENST00000482171 TOP2BQ02880 1626 aa15.25■□□□□ 0.03
SMPD4-218ENST00000482171 PRXQ9BXM0 1461 aa15.23■□□□□ 0.03
SMPD4-218ENST00000482171 EIF5BO60841 1220 aaKnown RBP15.23■□□□□ 0.03
SMPD4-218ENST00000482171 CANXP27824 592 aaKnown RBP15.22■□□□□ 0.03
SMPD4-218ENST00000482171 PHLDB1Q86UU1 1377 aa15.21■□□□□ 0.03
SMPD4-218ENST00000482171 POLA1P09884 1462 aaPredicted RBP15.21■□□□□ 0.03
SMPD4-218ENST00000482171 TOPBP1Q92547 1522 aa15.21■□□□□ 0.03
SMPD4-218ENST00000482171 SLC24A1O60721 1099 aa15.21■□□□□ 0.03
SMPD4-218ENST00000482171 HSPA5P11021 654 aaKnown RBP15.2■□□□□ 0.02
SMPD4-218ENST00000482171 TSHZ2Q9NRE2 1034 aa15.2■□□□□ 0.02
SMPD4-218ENST00000482171 PPP1R15AO75807 674 aaPredicted RBP15.2■□□□□ 0.02
SMPD4-218ENST00000482171 TIMELESSQ9UNS1 1208 aa15.2■□□□□ 0.02
SMPD4-218ENST00000482171 NUP155O75694 1391 aa15.19■□□□□ 0.02
SMPD4-218ENST00000482171 ZNF644Q9H582 1327 aaPredicted RBP15.19■□□□□ 0.02
SMPD4-218ENST00000482171 L3MBTL2Q969R5 705 aa15.18■□□□□ 0.02
SMPD4-218ENST00000482171 GGT6Q6P531 493 aa15.17■□□□□ 0.02
SMPD4-218ENST00000482171 CCDC18Q5T9S5 1454 aa15.16■□□□□ 0.02
SMPD4-218ENST00000482171 NEFMP07197 916 aa15.15■□□□□ 0.02
SMPD4-218ENST00000482171 EFCAB2Q5VUJ9 269 aa15.15■□□□□ 0.02
SMPD4-218ENST00000482171 ERICH3Q5RHP9 1530 aa15.15■□□□□ 0.02
SMPD4-218ENST00000482171 RBM19Q9Y4C8 960 aaKnown RBP15.14■□□□□ 0.02
SMPD4-218ENST00000482171 ARID4BQ4LE39 1312 aaPredicted RBP15.14■□□□□ 0.01
SMPD4-218ENST00000482171 WDR43Q15061 677 aaKnown RBP eCLIP15.14■□□□□ 0.01
SMPD4-218ENST00000482171 ZBTB47Q9UFB7 747 aaPredicted RBP15.14■□□□□ 0.01
SMPD4-218ENST00000482171 PTPRGP23470 1445 aa15.14■□□□□ 0.01
SMPD4-218ENST00000482171 MLECQ14165 292 aa15.13■□□□□ 0.01
SMPD4-218ENST00000482171 ANKRD30AQ9BXX3 1397 aa15.13■□□□□ 0.01
SMPD4-218ENST00000482171 CCDC136Q96JN2 1154 aa15.12■□□□□ 0.01
SMPD4-218ENST00000482171 PEG3Q9GZU2 1588 aa15.12■□□□□ 0.01
SMPD4-218ENST00000482171 LRRC9Q6ZRR7 1453 aa15.12■□□□□ 0.01
SMPD4-218ENST00000482171 CC2D1BQ5T0F9 858 aaKnown RBP15.09■□□□□ 0.01
SMPD4-218ENST00000482171 FGD6Q6ZV73 1430 aa15.08■□□□□ 0.01
SMPD4-218ENST00000482171 PLEKHG5O94827 1062 aa15.08■□□□□ 0
SMPD4-218ENST00000482171 GRIN2BQ13224 1484 aa15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 97.7 ms