RNA–Protein interactions for RNA: ENST00000482171.5

SMPD4-218, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 2

Gene SMPD4, Length 4,298 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-218ENST00000482171 NISCHQ9Y2I1 1504 aa21.14■□□□□ 0.98
SMPD4-218ENST00000482171 DCAF8L2P0C7V8 631 aa20.41■□□□□ 0.86
SMPD4-218ENST00000482171 SHROOM4Q9ULL8 1493 aa19.59■□□□□ 0.73
SMPD4-218ENST00000482171 SUPT5HO00267 1087 aaKnown RBP19.51■□□□□ 0.71
SMPD4-218ENST00000482171 EHMT2Q96KQ7 1210 aa18.62■□□□□ 0.57
SMPD4-218ENST00000482171 FAM9AQ8IZU1 332 aaPredicted RBP18.31■□□□□ 0.52
SMPD4-218ENST00000482171 ABCC9O60706 1549 aa18■□□□□ 0.47
SMPD4-218ENST00000482171 TRIM41Q8WV44 630 aa17.99■□□□□ 0.47
SMPD4-218ENST00000482171 PCGF6Q9BYE7 350 aa17.95■□□□□ 0.46
SMPD4-218ENST00000482171 TTBK1Q5TCY1 1321 aaPredicted RBP17.9■□□□□ 0.46
SMPD4-218ENST00000482171 RANGAP1P46060 587 aaPredicted RBP17.79■□□□□ 0.44
SMPD4-218ENST00000482171 CHIC1Q5VXU3 224 aa17.78■□□□□ 0.44
SMPD4-218ENST00000482171 PABPN1Q86U42 306 aaKnown RBP eCLIP17.69■□□□□ 0.422e-6■■□□□ 12.8
SMPD4-218ENST00000482171 LOC105371045A0A1W2PR82 267 aa17.67■□□□□ 0.42
SMPD4-218ENST00000482171 APLP2Q06481 763 aa17.63■□□□□ 0.41
SMPD4-218ENST00000482171 UBTFP17480 764 aaKnown RBP17.59■□□□□ 0.41
SMPD4-218ENST00000482171 ZCCHC6Q5VYS8 1495 aaKnown RBP17.58■□□□□ 0.41
SMPD4-218ENST00000482171 PPARGC1BQ86YN6 1023 aaKnown RBP17.58■□□□□ 0.4
SMPD4-218ENST00000482171 HRCP23327 699 aa17.54■□□□□ 0.4
SMPD4-218ENST00000482171 PELP1Q8IZL8 1130 aaKnown RBP17.46■□□□□ 0.39
SMPD4-218ENST00000482171 CCDC180Q9P1Z9 1646 aa17.45■□□□□ 0.38
SMPD4-218ENST00000482171 ATP1B4Q9UN42 357 aaPredicted RBP17.36■□□□□ 0.37
SMPD4-218ENST00000482171 SCRIBQ14160 1630 aa17.34■□□□□ 0.37
SMPD4-218ENST00000482171 CCER1Q8TC90 406 aaPredicted RBP17.25■□□□□ 0.35
SMPD4-218ENST00000482171 ZEB1P37275 1124 aaPredicted RBP17.23■□□□□ 0.35
SMPD4-218ENST00000482171 TRIM26Q12899 539 aaPredicted RBP17.18■□□□□ 0.34
SMPD4-218ENST00000482171 CENPBP07199 599 aaPredicted RBP17.15■□□□□ 0.34
SMPD4-218ENST00000482171 ITGAEP38570 1179 aa16.98■□□□□ 0.31
SMPD4-218ENST00000482171 MYT1Q01538 1121 aa16.96■□□□□ 0.31
SMPD4-218ENST00000482171 HNRNPUL2Q1KMD3 747 aaKnown RBP16.95■□□□□ 0.3
SMPD4-218ENST00000482171 YTHDC1Q96MU7 727 aaKnown RBP16.94■□□□□ 0.3
SMPD4-218ENST00000482171 RSF1Q96T23 1441 aaPredicted RBP16.88■□□□□ 0.29
SMPD4-218ENST00000482171 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.85■□□□□ 0.29
SMPD4-218ENST00000482171 RB1CC1Q8TDY2 1594 aa16.82■□□□□ 0.28
SMPD4-218ENST00000482171 CSRNP3Q8WYN3 585 aa16.79■□□□□ 0.28
SMPD4-218ENST00000482171 NACADO15069 1562 aa16.78■□□□□ 0.28
SMPD4-218ENST00000482171 MYO15BQ96JP2 1530 aa16.77■□□□□ 0.27
SMPD4-218ENST00000482171 CECR2Q9BXF3 1484 aa16.75■□□□□ 0.27
SMPD4-218ENST00000482171 DCAF1Q9Y4B6 1507 aa16.75■□□□□ 0.27
SMPD4-218ENST00000482171 P3H3Q8IVL6 736 aa16.64■□□□□ 0.25
SMPD4-218ENST00000482171 FAM50AQ14320 339 aaKnown RBP16.57■□□□□ 0.24
SMPD4-218ENST00000482171 GTF3C3Q9Y5Q9 886 aa16.57■□□□□ 0.24
SMPD4-218ENST00000482171 DIEXFQ68CQ4 756 aaKnown RBP16.55■□□□□ 0.24
SMPD4-218ENST00000482171 FBLN2P98095 1184 aa16.55■□□□□ 0.24
SMPD4-218ENST00000482171 ARID3CA6NKF2 412 aa16.5■□□□□ 0.23
SMPD4-218ENST00000482171 MROH2BQ7Z745 1585 aa16.5■□□□□ 0.23
SMPD4-218ENST00000482171 ERICH6Q7L0X2 663 aa16.48■□□□□ 0.23
SMPD4-218ENST00000482171 BAZ1AQ9NRL2 1556 aaPredicted RBP16.45■□□□□ 0.22
SMPD4-218ENST00000482171 MYT1LQ9UL68 1186 aa16.42■□□□□ 0.22
SMPD4-218ENST00000482171 BAZ1BQ9UIG0 1483 aaKnown RBP16.41■□□□□ 0.22
SMPD4-218ENST00000482171 ACIN1Q9UKV3 1341 aaKnown RBP16.41■□□□□ 0.22
SMPD4-218ENST00000482171 SCAF1Q9H7N4 1312 aaKnown RBP16.39■□□□□ 0.21
SMPD4-218ENST00000482171 NEUROD1Q13562 356 aa16.36■□□□□ 0.21
SMPD4-218ENST00000482171 WRNQ14191 1432 aaPredicted RBP eCLIP16.35■□□□□ 0.21
SMPD4-218ENST00000482171 POLR3GLQ9BT43 218 aa16.35■□□□□ 0.21
SMPD4-218ENST00000482171 CNGB1Q14028 1251 aaPredicted RBP16.35■□□□□ 0.21
SMPD4-218ENST00000482171 NEFLP07196 543 aa16.34■□□□□ 0.21
SMPD4-218ENST00000482171 TRIM52Q96A61 297 aa16.3■□□□□ 0.2
SMPD4-218ENST00000482171 WIZO95785 1651 aa16.28■□□□□ 0.2
SMPD4-218ENST00000482171 CCDC88BA6NC98 1476 aa16.26■□□□□ 0.19
SMPD4-218ENST00000482171 SOGA1O94964 1423 aa16.23■□□□□ 0.19
SMPD4-218ENST00000482171 CLIP1P30622 1438 aa16.23■□□□□ 0.19
SMPD4-218ENST00000482171 ABCC8Q09428 1581 aa16.22■□□□□ 0.19
SMPD4-218ENST00000482171 CEP162Q5TB80 1403 aa16.22■□□□□ 0.19
SMPD4-218ENST00000482171 GOLGA3Q08378 1498 aa16.15■□□□□ 0.18
SMPD4-218ENST00000482171 ZNF777Q9ULD5 760 aaPredicted RBP16.15■□□□□ 0.18
SMPD4-218ENST00000482171 EEA1Q15075 1411 aa16.13■□□□□ 0.17
SMPD4-218ENST00000482171 ZNF316A6NFI3 1004 aaPredicted RBP16.11■□□□□ 0.17
SMPD4-218ENST00000482171 ZNF326Q5BKZ1 582 aaKnown RBP16.1■□□□□ 0.17
SMPD4-218ENST00000482171 TNIKQ9UKE5 1360 aa16.09■□□□□ 0.17
SMPD4-218ENST00000482171 BCANQ96GW7 911 aa16.07■□□□□ 0.16
SMPD4-218ENST00000482171 KIF27Q86VH2 1401 aa16.06■□□□□ 0.16
SMPD4-218ENST00000482171 CHIC2Q9UKJ5 165 aa16.05■□□□□ 0.16
SMPD4-218ENST00000482171 TOP2AP11388 1531 aaKnown RBP16.04■□□□□ 0.16
SMPD4-218ENST00000482171 CEP164Q9UPV0 1460 aa16.03■□□□□ 0.16
SMPD4-218ENST00000482171 SMARCA4P51532 1647 aa16.01■□□□□ 0.15
SMPD4-218ENST00000482171 CHMP7Q8WUX9 453 aaPredicted RBP16.01■□□□□ 0.15
SMPD4-218ENST00000482171 ATAD2BQ9ULI0 1458 aa16■□□□□ 0.15
SMPD4-218ENST00000482171 SMARCA2P51531 1590 aa16■□□□□ 0.15
SMPD4-218ENST00000482171 CDK11AQ9UQ88 783 aaPredicted RBP15.99■□□□□ 0.15
SMPD4-218ENST00000482171 MTUS2Q5JR59 1369 aa15.97■□□□□ 0.15
SMPD4-218ENST00000482171 CUX2O14529 1486 aa15.96■□□□□ 0.15
SMPD4-218ENST00000482171 RUSC2Q8N2Y8 1516 aa15.92■□□□□ 0.14
SMPD4-218ENST00000482171 CARMIL1Q5VZK9 1371 aa15.9■□□□□ 0.14
SMPD4-218ENST00000482171 SLC4A1APQ9BWU0 796 aaKnown RBP15.88■□□□□ 0.13
SMPD4-218ENST00000482171 RRP7BPQ9NSQ0 103 aa15.86■□□□□ 0.13
SMPD4-218ENST00000482171 TDRD9Q8NDG6 1382 aaKnown RBP15.84■□□□□ 0.13
SMPD4-218ENST00000482171 HIRIP3Q9BW71 556 aaPredicted RBP15.84■□□□□ 0.13
SMPD4-218ENST00000482171 ANP32CO43423 234 aa15.83■□□□□ 0.12
SMPD4-218ENST00000482171 KANK4Q5T7N3 995 aaPredicted RBP15.82■□□□□ 0.12
SMPD4-218ENST00000482171 TONSLQ96HA7 1378 aa15.82■□□□□ 0.12
SMPD4-218ENST00000482171 CADPSQ9ULU8 1353 aa15.82■□□□□ 0.12
SMPD4-218ENST00000482171 ERCC6Q03468 1493 aa15.81■□□□□ 0.12
SMPD4-218ENST00000482171 MIER1Q8N108 512 aa15.81■□□□□ 0.12
SMPD4-218ENST00000482171 DDX10Q13206 875 aaKnown RBP15.8■□□□□ 0.12
SMPD4-218ENST00000482171 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.76■□□□□ 0.117e-8■■■■□ 25
SMPD4-218ENST00000482171 RAPGEF2Q9Y4G8 1499 aa15.76■□□□□ 0.11
SMPD4-218ENST00000482171 KCNH8Q96L42 1107 aa15.76■□□□□ 0.11
SMPD4-218ENST00000482171 VPS8Q8N3P4 1428 aa15.75■□□□□ 0.11
SMPD4-218ENST00000482171 EIF4G1Q04637 1599 aaKnown RBP15.71■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms