RNA–Protein interactions for RNA: ENST00000479197.1

RFK-204, Transcript of riboflavin kinase, human

TSL 1 (best)

Gene RFK, Length 1,501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFK-204	ENST00000479197	RIMBP3C	A6NJZ7	1639 aa		29.86	■■■□□ 2.37
RFK-204	ENST00000479197	RIMBP3B	A6NNM3	1639 aa		29.86	■■■□□ 2.37
RFK-204	ENST00000479197	RIMBP3	Q9UFD9	1639 aa		29.86	■■■□□ 2.37
RFK-204	ENST00000479197	SHROOM2	Q13796	1616 aa		29.85	■■■□□ 2.37
RFK-204	ENST00000479197	KIF21B	O75037	1637 aa		29.8	■■■□□ 2.36
RFK-204	ENST00000479197	CTTNBP2	Q8WZ74	1663 aa		29.77	■■■□□ 2.36
RFK-204	ENST00000479197	IQGAP2	Q13576	1575 aa		29.76	■■■□□ 2.35
RFK-204	ENST00000479197	JPH4	Q96JJ6	628 aa		29.75	■■■□□ 2.35
RFK-204	ENST00000479197	ERCC6L2	Q5T890	1561 aa		29.69	■■■□□ 2.34
RFK-204	ENST00000479197	PRG4	Q92954	1404 aa	Predicted RBP	29.68	■■■□□ 2.34
RFK-204	ENST00000479197	ARAP1	Q96P48	1450 aa		29.65	■■■□□ 2.34
RFK-204	ENST00000479197	GOLGA3	Q08378	1498 aa		29.62	■■■□□ 2.33
RFK-204	ENST00000479197	UGGT2	Q9NYU1	1516 aa		29.6	■■■□□ 2.33
RFK-204	ENST00000479197	CYB5RL	Q6IPT4	315 aa		29.55	■■■□□ 2.32
RFK-204	ENST00000479197	EHMT2	Q96KQ7	1210 aa		29.54	■■■□□ 2.32
RFK-204	ENST00000479197	CARMIL2	Q6F5E8	1435 aa		29.53	■■■□□ 2.32
RFK-204	ENST00000479197	DISP1	Q96F81	1524 aa		29.51	■■■□□ 2.31
RFK-204	ENST00000479197	KIAA0556	O60303	1618 aa		29.48	■■■□□ 2.31
RFK-204	ENST00000479197	UBTF	P17480	764 aa	Known RBP	29.48	■■■□□ 2.31
RFK-204	ENST00000479197	TNIK	Q9UKE5	1360 aa		29.41	■■■□□ 2.3
RFK-204	ENST00000479197	SAMD9	Q5K651	1589 aa		29.38	■■■□□ 2.29
RFK-204	ENST00000479197	PTPRG	P23470	1445 aa		29.35	■■■□□ 2.29
RFK-204	ENST00000479197	RANGAP1	P46060	587 aa	Predicted RBP	29.33	■■■□□ 2.29
RFK-204	ENST00000479197	TTBK1	Q5TCY1	1321 aa	Predicted RBP	29.31	■■■□□ 2.28
RFK-204	ENST00000479197	EFCAB5	A4FU69	1503 aa		29.3	■■■□□ 2.28
RFK-204	ENST00000479197	P3H3	Q8IVL6	736 aa		29.25	■■■□□ 2.27
RFK-204	ENST00000479197	ADCY10	Q96PN6	1610 aa		29.24	■■■□□ 2.27
RFK-204	ENST00000479197	FHOD3	Q2V2M9	1422 aa		29.19	■■■□□ 2.26
RFK-204	ENST00000479197	UACA	Q9BZF9	1416 aa		29.18	■■■□□ 2.26
RFK-204	ENST00000479197	ARHGAP35	Q9NRY4	1499 aa		29.17	■■■□□ 2.26
RFK-204	ENST00000479197	UHRF1BP1L	A0JNW5	1464 aa		29.15	■■■□□ 2.26
RFK-204	ENST00000479197	LOC105371045	A0A1W2PR82	267 aa		29.15	■■■□□ 2.26
RFK-204	ENST00000479197	ABCC2	Q92887	1545 aa		29.15	■■■□□ 2.26
RFK-204	ENST00000479197	PLB1	Q6P1J6	1458 aa		29.13	■■■□□ 2.25
RFK-204	ENST00000479197	ABCA8	O94911	1581 aa		29.12	■■■□□ 2.25
RFK-204	ENST00000479197	CLIP1	P30622	1438 aa		29.08	■■■□□ 2.25
RFK-204	ENST00000479197	NPM1	P06748	294 aa	Known RBP eCLIP	29.06	■■■□□ 2.24
RFK-204	ENST00000479197	RAPGEF6	Q8TEU7	1601 aa		29.04	■■■□□ 2.24
RFK-204	ENST00000479197	CEP162	Q5TB80	1403 aa		29.02	■■■□□ 2.24
RFK-204	ENST00000479197	KDM5B	Q9UGL1	1544 aa		29.02	■■■□□ 2.24
RFK-204	ENST00000479197	FMN1	Q68DA7	1419 aa		29	■■■□□ 2.23
RFK-204	ENST00000479197	MAPKBP1	O60336	1514 aa		28.99	■■■□□ 2.23
RFK-204	ENST00000479197	ZCCHC11	Q5TAX3	1644 aa	Known RBP	28.99	■■■□□ 2.23
RFK-204	ENST00000479197	NUP153	P49790	1475 aa	Known RBP	28.92	■■■□□ 2.22
RFK-204	ENST00000479197	ASXL2	Q76L83	1435 aa		28.87	■■■□□ 2.21
RFK-204	ENST00000479197	HECW1	Q76N89	1606 aa		28.86	■■■□□ 2.21
RFK-204	ENST00000479197	ATP10B	O94823	1461 aa		28.86	■■■□□ 2.21
RFK-204	ENST00000479197	ARID3C	A6NKF2	412 aa		28.85	■■■□□ 2.21
RFK-204	ENST00000479197	TRH	P20396	242 aa	Predicted RBP	28.85	■■■□□ 2.21
RFK-204	ENST00000479197	PCF11	O94913	1555 aa	Known RBP	28.83	■■■□□ 2.21
RFK-204	ENST00000479197	KIF13A	Q9H1H9	1805 aa		28.8	■■■□□ 2.2
RFK-204	ENST00000479197	CASKIN1	Q8WXD9	1431 aa		28.8	■■■□□ 2.2
RFK-204	ENST00000479197	ABCC10	Q5T3U5	1492 aa		28.8	■■■□□ 2.2
RFK-204	ENST00000479197	DIP2B	Q9P265	1576 aa		28.79	■■■□□ 2.2
RFK-204	ENST00000479197	WDR7	Q9Y4E6	1490 aa		28.78	■■■□□ 2.2
RFK-204	ENST00000479197	ATP1B4	Q9UN42	357 aa	Predicted RBP	28.77	■■■□□ 2.2
RFK-204	ENST00000479197	FYCO1	Q9BQS8	1478 aa		28.76	■■■□□ 2.2
RFK-204	ENST00000479197	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	28.75	■■■□□ 2.19
RFK-204	ENST00000479197	HNRNPUL2	Q1KMD3	747 aa	Known RBP	28.75	■■■□□ 2.19
RFK-204	ENST00000479197	EPRS	P07814	1512 aa	Known RBP	28.75	■■■□□ 2.19
RFK-204	ENST00000479197	CDK13	Q14004	1512 aa	Known RBP	28.74	■■■□□ 2.19
RFK-204	ENST00000479197	LRRIQ1	Q96JM4	1722 aa		28.74	■■■□□ 2.19
RFK-204	ENST00000479197	FAM69C	Q0P6D2	419 aa		28.7	■■■□□ 2.19
RFK-204	ENST00000479197	CCDC18	Q5T9S5	1454 aa		28.68	■■■□□ 2.18
RFK-204	ENST00000479197	GLI2	P10070	1586 aa		28.68	■■■□□ 2.18
RFK-204	ENST00000479197	VPS8	Q8N3P4	1428 aa		28.67	■■■□□ 2.18
RFK-204	ENST00000479197	PLEKHD1	A6NEE1	506 aa		28.63	■■■□□ 2.17
RFK-204	ENST00000479197	KCNH8	Q96L42	1107 aa		28.62	■■■□□ 2.17
RFK-204	ENST00000479197	CDK11A	Q9UQ88	783 aa	Predicted RBP	28.59	■■■□□ 2.17
RFK-204	ENST00000479197	MAP3K4	Q9Y6R4	1608 aa		28.57	■■■□□ 2.16
RFK-204	ENST00000479197	TSPOAP1	O95153	1857 aa		28.56	■■■□□ 2.16
RFK-204	ENST00000479197	CFAP43	Q8NDM7	1665 aa		28.55	■■■□□ 2.16
RFK-204	ENST00000479197	ABCA9	Q8IUA7	1624 aa		28.52	■■■□□ 2.16
RFK-204	ENST00000479197	TRO	Q12816	1431 aa	Predicted RBP	28.51	■■■□□ 2.15
RFK-204	ENST00000479197	PPRC1	Q5VV67	1664 aa	Known RBP	28.49	■■■□□ 2.15
RFK-204	ENST00000479197	MAGI3	Q5TCQ9	1506 aa		28.48	■■■□□ 2.15
RFK-204	ENST00000479197	CD109	Q6YHK3	1445 aa		28.46	■■■□□ 2.15
RFK-204	ENST00000479197	KIF14	Q15058	1648 aa		28.46	■■■□□ 2.15
RFK-204	ENST00000479197	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	28.45	■■■□□ 2.14	1e-7	■■■■■ 34.5
RFK-204	ENST00000479197	TIAM1	Q13009	1591 aa		28.44	■■■□□ 2.14
RFK-204	ENST00000479197	TTC37	Q6PGP7	1564 aa		28.43	■■■□□ 2.14
RFK-204	ENST00000479197	TEX14	Q8IWB6	1497 aa		28.4	■■■□□ 2.14
RFK-204	ENST00000479197	MAP3K1	Q13233	1512 aa		28.39	■■■□□ 2.13
RFK-204	ENST00000479197	MTUS2	Q5JR59	1369 aa		28.38	■■■□□ 2.13
RFK-204	ENST00000479197	EHBP1L1	Q8N3D4	1523 aa		28.37	■■■□□ 2.13
RFK-204	ENST00000479197	MYO5C	Q9NQX4	1742 aa		28.33	■■■□□ 2.13
RFK-204	ENST00000479197	APLP2	Q06481	763 aa		28.3	■■■□□ 2.12
RFK-204	ENST00000479197	LRRC9	Q6ZRR7	1453 aa		28.29	■■■□□ 2.12
RFK-204	ENST00000479197	PLCH2	O75038	1416 aa		28.27	■■■□□ 2.12
RFK-204	ENST00000479197	KDM6B	O15054	1643 aa		28.26	■■■□□ 2.11
RFK-204	ENST00000479197	ARAP3	Q8WWN8	1544 aa		28.25	■■■□□ 2.11
RFK-204	ENST00000479197	SUPT6H	Q7KZ85	1726 aa	Known RBP	28.25	■■■□□ 2.11
RFK-204	ENST00000479197	CFAP74	Q9C0B2	1584 aa		28.24	■■■□□ 2.11
RFK-204	ENST00000479197	NEO1	Q92859	1461 aa		28.24	■■■□□ 2.11
RFK-204	ENST00000479197	CDC42BPA	Q5VT25	1732 aa		28.23	■■■□□ 2.11
RFK-204	ENST00000479197	PREX2	Q70Z35	1606 aa		28.23	■■■□□ 2.11
RFK-204	ENST00000479197	FANCA	O15360	1455 aa		28.23	■■■□□ 2.11
RFK-204	ENST00000479197	CDC42BPB	Q9Y5S2	1711 aa		28.22	■■■□□ 2.11
RFK-204	ENST00000479197	KANK4	Q5T7N3	995 aa	Predicted RBP	28.21	■■■□□ 2.11
RFK-204	ENST00000479197	AEBP2	Q6ZN18	517 aa	Predicted RBP	28.21	■■■□□ 2.11

Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms