RNA–Protein interactions for RNA: ENST00000477299.5

COPS3-207, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 5

Gene COPS3, Length 656 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-207ENST00000477299 KIAA0586Q9BVV6 1533 aa26.22■■□□□ 1.79
COPS3-207ENST00000477299 CTTNBP2Q8WZ74 1663 aa26.2■■□□□ 1.78
COPS3-207ENST00000477299 SHROOM2Q13796 1616 aa26.2■■□□□ 1.78
COPS3-207ENST00000477299 ERCC6L2Q5T890 1561 aa26.2■■□□□ 1.78
COPS3-207ENST00000477299 RIMBP3CA6NJZ7 1639 aa26.19■■□□□ 1.78
COPS3-207ENST00000477299 RIMBP3BA6NNM3 1639 aa26.19■■□□□ 1.78
COPS3-207ENST00000477299 RIMBP3Q9UFD9 1639 aa26.19■■□□□ 1.78
COPS3-207ENST00000477299 JPH4Q96JJ6 628 aa26.18■■□□□ 1.78
COPS3-207ENST00000477299 ARHGEF11O15085 1522 aa26.18■■□□□ 1.78
COPS3-207ENST00000477299 IQGAP2Q13576 1575 aa26.14■■□□□ 1.78
COPS3-207ENST00000477299 PRG4Q92954 1404 aaPredicted RBP26.1■■□□□ 1.77
COPS3-207ENST00000477299 GOLGA3Q08378 1498 aa26.09■■□□□ 1.77
COPS3-207ENST00000477299 UBTFP17480 764 aaKnown RBP26.07■■□□□ 1.76
COPS3-207ENST00000477299 LOC105371045A0A1W2PR82 267 aa26.03■■□□□ 1.76
COPS3-207ENST00000477299 RANGAP1P46060 587 aaPredicted RBP26.03■■□□□ 1.76
COPS3-207ENST00000477299 ARAP1Q96P48 1450 aa26.02■■□□□ 1.76
COPS3-207ENST00000477299 UGGT2Q9NYU1 1516 aa26■■□□□ 1.75
COPS3-207ENST00000477299 DISP1Q96F81 1524 aa25.98■■□□□ 1.75
COPS3-207ENST00000477299 CYB5RLQ6IPT4 315 aa25.97■■□□□ 1.75
COPS3-207ENST00000477299 TTBK1Q5TCY1 1321 aaPredicted RBP25.93■■□□□ 1.74
COPS3-207ENST00000477299 P3H3Q8IVL6 736 aa25.92■■□□□ 1.74
COPS3-207ENST00000477299 KIAA0556O60303 1618 aa25.92■■□□□ 1.74
COPS3-207ENST00000477299 CARMIL2Q6F5E8 1435 aa25.88■■□□□ 1.73
COPS3-207ENST00000477299 SAMD9Q5K651 1589 aa25.86■■□□□ 1.73
COPS3-207ENST00000477299 TNIKQ9UKE5 1360 aa25.83■■□□□ 1.73
COPS3-207ENST00000477299 PTPRGP23470 1445 aa25.8■■□□□ 1.72
COPS3-207ENST00000477299 FHOD3Q2V2M9 1422 aa25.76■■□□□ 1.71
COPS3-207ENST00000477299 ARHGAP35Q9NRY4 1499 aa25.76■■□□□ 1.71
COPS3-207ENST00000477299 EFCAB5A4FU69 1503 aa25.71■■□□□ 1.71
COPS3-207ENST00000477299 ADCY10Q96PN6 1610 aa25.7■■□□□ 1.7
COPS3-207ENST00000477299 CLIP1P30622 1438 aa25.67■■□□□ 1.7
COPS3-207ENST00000477299 PLB1Q6P1J6 1458 aa25.66■■□□□ 1.7
COPS3-207ENST00000477299 CEP162Q5TB80 1403 aa25.64■■□□□ 1.7
COPS3-207ENST00000477299 UACAQ9BZF9 1416 aa25.63■■□□□ 1.69
COPS3-207ENST00000477299 ABCA8O94911 1581 aa25.61■■□□□ 1.69
COPS3-207ENST00000477299 ABCC2Q92887 1545 aa25.58■■□□□ 1.68
COPS3-207ENST00000477299 UHRF1BP1LA0JNW5 1464 aa25.55■■□□□ 1.68
COPS3-207ENST00000477299 ARID3CA6NKF2 412 aa25.55■■□□□ 1.68
COPS3-207ENST00000477299 RAPGEF6Q8TEU7 1601 aa25.54■■□□□ 1.68
COPS3-207ENST00000477299 ZCCHC11Q5TAX3 1644 aaKnown RBP25.48■■□□□ 1.67
COPS3-207ENST00000477299 KDM5BQ9UGL1 1544 aa25.47■■□□□ 1.67
COPS3-207ENST00000477299 NPM1P06748 294 aaKnown RBP eCLIP25.46■■□□□ 1.67
COPS3-207ENST00000477299 NUP153P49790 1475 aaKnown RBP25.46■■□□□ 1.67
COPS3-207ENST00000477299 LRRIQ1Q96JM4 1722 aa25.46■■□□□ 1.67
COPS3-207ENST00000477299 FMN1Q68DA7 1419 aa25.46■■□□□ 1.67
COPS3-207ENST00000477299 ATP1B4Q9UN42 357 aaPredicted RBP25.45■■□□□ 1.66
COPS3-207ENST00000477299 ATP10BO94823 1461 aa25.43■■□□□ 1.66
COPS3-207ENST00000477299 PCF11O94913 1555 aaKnown RBP25.43■■□□□ 1.66
COPS3-207ENST00000477299 CDK13Q14004 1512 aaKnown RBP25.37■■□□□ 1.65
COPS3-207ENST00000477299 ASXL2Q76L83 1435 aa25.36■■□□□ 1.65
COPS3-207ENST00000477299 CASKIN1Q8WXD9 1431 aa25.36■■□□□ 1.65
COPS3-207ENST00000477299 HECW1Q76N89 1606 aa25.35■■□□□ 1.65
COPS3-207ENST00000477299 MAPKBP1O60336 1514 aa25.35■■□□□ 1.65
COPS3-207ENST00000477299 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.34■■□□□ 1.65
COPS3-207ENST00000477299 HNRNPUL2Q1KMD3 747 aaKnown RBP25.34■■□□□ 1.65
COPS3-207ENST00000477299 EPRSP07814 1512 aaKnown RBP25.32■■□□□ 1.64
COPS3-207ENST00000477299 KIF13AQ9H1H9 1805 aa25.32■■□□□ 1.64
COPS3-207ENST00000477299 TRHP20396 242 aaPredicted RBP25.31■■□□□ 1.64
COPS3-207ENST00000477299 FYCO1Q9BQS8 1478 aa25.28■■□□□ 1.64
COPS3-207ENST00000477299 VPS8Q8N3P4 1428 aa25.28■■□□□ 1.64
COPS3-207ENST00000477299 KCNH8Q96L42 1107 aa25.26■■□□□ 1.63
COPS3-207ENST00000477299 DIP2BQ9P265 1576 aa25.24■■□□□ 1.63
COPS3-207ENST00000477299 ABCC10Q5T3U5 1492 aa25.23■■□□□ 1.63
COPS3-207ENST00000477299 WDR7Q9Y4E6 1490 aa25.23■■□□□ 1.63
COPS3-207ENST00000477299 FAM69CQ0P6D2 419 aa25.22■■□□□ 1.63
COPS3-207ENST00000477299 MAGI3Q5TCQ9 1506 aa25.18■■□□□ 1.62
COPS3-207ENST00000477299 PLEKHD1A6NEE1 506 aa25.18■■□□□ 1.62
COPS3-207ENST00000477299 TSPOAP1O95153 1857 aa25.17■■□□□ 1.62
COPS3-207ENST00000477299 CCDC18Q5T9S5 1454 aa25.15■■□□□ 1.62
COPS3-207ENST00000477299 GLI2P10070 1586 aa25.11■■□□□ 1.61
COPS3-207ENST00000477299 CFAP43Q8NDM7 1665 aa25.1■■□□□ 1.61
COPS3-207ENST00000477299 KIF14Q15058 1648 aa25.09■■□□□ 1.61
COPS3-207ENST00000477299 TIAM1Q13009 1591 aa25.08■■□□□ 1.61
COPS3-207ENST00000477299 TROQ12816 1431 aaPredicted RBP25.07■■□□□ 1.6
COPS3-207ENST00000477299 CDK11AQ9UQ88 783 aaPredicted RBP25.07■■□□□ 1.6
COPS3-207ENST00000477299 MAP3K4Q9Y6R4 1608 aa25.07■■□□□ 1.6
COPS3-207ENST00000477299 PPRC1Q5VV67 1664 aaKnown RBP25.06■■□□□ 1.6
COPS3-207ENST00000477299 KANK4Q5T7N3 995 aaPredicted RBP25.05■■□□□ 1.6
COPS3-207ENST00000477299 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP25.04■■□□□ 1.66e-8■■■■□ 20.3
COPS3-207ENST00000477299 TTC37Q6PGP7 1564 aa25.04■■□□□ 1.6
COPS3-207ENST00000477299 ABCA9Q8IUA7 1624 aa25.04■■□□□ 1.6
COPS3-207ENST00000477299 CD109Q6YHK3 1445 aa24.99■■□□□ 1.59
COPS3-207ENST00000477299 MTUS2Q5JR59 1369 aa24.98■■□□□ 1.59
COPS3-207ENST00000477299 MAP3K1Q13233 1512 aa24.96■■□□□ 1.59
COPS3-207ENST00000477299 LRRC9Q6ZRR7 1453 aa24.96■■□□□ 1.59
COPS3-207ENST00000477299 EHBP1L1Q8N3D4 1523 aa24.93■■□□□ 1.58
COPS3-207ENST00000477299 APLP2Q06481 763 aa24.93■■□□□ 1.58
COPS3-207ENST00000477299 PPARGC1BQ86YN6 1023 aaKnown RBP24.93■■□□□ 1.58
COPS3-207ENST00000477299 CDC42BPAQ5VT25 1732 aa24.9■■□□□ 1.58
COPS3-207ENST00000477299 MYO5CQ9NQX4 1742 aa24.9■■□□□ 1.58
COPS3-207ENST00000477299 CDC42BPBQ9Y5S2 1711 aa24.89■■□□□ 1.58
COPS3-207ENST00000477299 SUPT6HQ7KZ85 1726 aaKnown RBP24.87■■□□□ 1.57
COPS3-207ENST00000477299 NCOA2Q15596 1464 aa24.85■■□□□ 1.57
COPS3-207ENST00000477299 PLCH2O75038 1416 aa24.85■■□□□ 1.57
COPS3-207ENST00000477299 GPATCH8Q9UKJ3 1502 aaKnown RBP24.82■■□□□ 1.56
COPS3-207ENST00000477299 PREX2Q70Z35 1606 aa24.82■■□□□ 1.56
COPS3-207ENST00000477299 COL17A1Q9UMD9 1497 aaPredicted RBP24.82■■□□□ 1.56
COPS3-207ENST00000477299 TEX14Q8IWB6 1497 aa24.8■■□□□ 1.56
COPS3-207ENST00000477299 CCNB3Q8WWL7 1395 aa24.79■■□□□ 1.56
COPS3-207ENST00000477299 FANCAO15360 1455 aa24.78■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms