RNA–Protein interactions for RNA: ENST00000475375.1

VPS36-203, Transcript of vacuolar protein sorting 36 homolog, humanhuman

TSL 2

Gene VPS36, Length 754 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS36-203ENST00000475375 RUSC2Q8N2Y8 1516 aa36.27■■■■□ 3.4
VPS36-203ENST00000475375 NPM1P06748 294 aaKnown RBP eCLIP36.26■■■■□ 3.4
VPS36-203ENST00000475375 FAM69CQ0P6D2 419 aa36.21■■■■□ 3.39
VPS36-203ENST00000475375 ABCC10Q5T3U5 1492 aa36.13■■■■□ 3.37
VPS36-203ENST00000475375 MAPKBP1O60336 1514 aa36.08■■■■□ 3.37
VPS36-203ENST00000475375 ADCY10Q96PN6 1610 aa36.07■■■■□ 3.36
VPS36-203ENST00000475375 KIAA0586Q9BVV6 1533 aa36.07■■■■□ 3.36
VPS36-203ENST00000475375 IGF1RP08069 1367 aa36.05■■■■□ 3.36
VPS36-203ENST00000475375 KIF27Q86VH2 1401 aa36.04■■■■□ 3.36
VPS36-203ENST00000475375 DIP2BQ9P265 1576 aa36.02■■■■□ 3.36
VPS36-203ENST00000475375 CUL7Q14999 1698 aa35.98■■■■□ 3.35
VPS36-203ENST00000475375 TTBK1Q5TCY1 1321 aaPredicted RBP35.92■■■■□ 3.34
VPS36-203ENST00000475375 PTPRGP23470 1445 aa35.87■■■■□ 3.33
VPS36-203ENST00000475375 KDM6BO15054 1643 aa35.85■■■■□ 3.33
VPS36-203ENST00000475375 CARMIL1Q5VZK9 1371 aa35.83■■■■□ 3.33
VPS36-203ENST00000475375 TSPOAP1O95153 1857 aa35.82■■■■□ 3.33
VPS36-203ENST00000475375 CARMIL2Q6F5E8 1435 aa35.78■■■■□ 3.32
VPS36-203ENST00000475375 TNIKQ9UKE5 1360 aa35.76■■■■□ 3.31
VPS36-203ENST00000475375 ABCC2Q92887 1545 aa35.69■■■■□ 3.3
VPS36-203ENST00000475375 KDM4FA0A1W2PPD8 638 aa35.67■■■■□ 3.3
VPS36-203ENST00000475375 IQGAP2Q13576 1575 aa35.67■■■■□ 3.3
VPS36-203ENST00000475375 ASXL2Q76L83 1435 aa35.64■■■■□ 3.3
VPS36-203ENST00000475375 PLB1Q6P1J6 1458 aa35.6■■■■□ 3.29
VPS36-203ENST00000475375 UACAQ9BZF9 1416 aa35.56■■■■□ 3.28
VPS36-203ENST00000475375 UHRF1BP1LA0JNW5 1464 aa35.54■■■■□ 3.28
VPS36-203ENST00000475375 DISP1Q96F81 1524 aa35.51■■■■□ 3.27
VPS36-203ENST00000475375 GLI2P10070 1586 aa35.51■■■■□ 3.27
VPS36-203ENST00000475375 RAPGEF2Q9Y4G8 1499 aa35.45■■■■□ 3.27
VPS36-203ENST00000475375 PPRC1Q5VV67 1664 aaKnown RBP35.45■■■■□ 3.27
VPS36-203ENST00000475375 UGGT2Q9NYU1 1516 aa35.4■■■■□ 3.26
VPS36-203ENST00000475375 EPRSP07814 1512 aaKnown RBP35.39■■■■□ 3.26
VPS36-203ENST00000475375 KDM5BQ9UGL1 1544 aa35.39■■■■□ 3.26
VPS36-203ENST00000475375 KIAA0556O60303 1618 aa35.34■■■■□ 3.25
VPS36-203ENST00000475375 ZCCHC11Q5TAX3 1644 aaKnown RBP35.33■■■■□ 3.25
VPS36-203ENST00000475375 ADGRL1O94910 1474 aa35.31■■■■□ 3.24
VPS36-203ENST00000475375 TEX14Q8IWB6 1497 aa35.31■■■■□ 3.24
VPS36-203ENST00000475375 MAP3K4Q9Y6R4 1608 aa35.3■■■■□ 3.24
VPS36-203ENST00000475375 COL17A1Q9UMD9 1497 aaPredicted RBP35.29■■■■□ 3.24
VPS36-203ENST00000475375 WDR7Q9Y4E6 1490 aa35.21■■■■□ 3.23
VPS36-203ENST00000475375 GOLGA3Q08378 1498 aa35.14■■■■□ 3.22
VPS36-203ENST00000475375 CTTNBP2Q8WZ74 1663 aa35.14■■■■□ 3.22
VPS36-203ENST00000475375 KCNH8Q96L42 1107 aa35.11■■■■□ 3.21
VPS36-203ENST00000475375 CD109Q6YHK3 1445 aa35.06■■■■□ 3.2
VPS36-203ENST00000475375 ILDR1Q86SU0 546 aaPredicted RBP35.05■■■■□ 3.2
VPS36-203ENST00000475375 ABCA8O94911 1581 aa35.03■■■■□ 3.2
VPS36-203ENST00000475375 MAGI3Q5TCQ9 1506 aa34.99■■■■□ 3.19
VPS36-203ENST00000475375 CFAP43Q8NDM7 1665 aa34.98■■■■□ 3.19
VPS36-203ENST00000475375 FAM9AQ8IZU1 332 aaPredicted RBP34.94■■■■□ 3.18
VPS36-203ENST00000475375 PRXQ9BXM0 1461 aa34.94■■■■□ 3.18
VPS36-203ENST00000475375 HECW2Q9P2P5 1572 aa34.94■■■■□ 3.18
VPS36-203ENST00000475375 ARID3CA6NKF2 412 aa34.93■■■■□ 3.18
VPS36-203ENST00000475375 P3H3Q8IVL6 736 aa34.88■■■■□ 3.17
VPS36-203ENST00000475375 ATP10BO94823 1461 aa34.77■■■■□ 3.16
VPS36-203ENST00000475375 KIF21BO75037 1637 aa34.76■■■■□ 3.15
VPS36-203ENST00000475375 ARAP3Q8WWN8 1544 aa34.73■■■■□ 3.15
VPS36-203ENST00000475375 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP34.68■■■■□ 3.14
VPS36-203ENST00000475375 HNRNPUL2Q1KMD3 747 aaKnown RBP34.68■■■■□ 3.14
VPS36-203ENST00000475375 ABCA9Q8IUA7 1624 aa34.64■■■■□ 3.14
VPS36-203ENST00000475375 PHLDB1Q86UU1 1377 aa34.63■■■■□ 3.13
VPS36-203ENST00000475375 CSRNP3Q8WYN3 585 aa34.63■■■■□ 3.13
VPS36-203ENST00000475375 RAPGEF6Q8TEU7 1601 aa34.6■■■■□ 3.13
VPS36-203ENST00000475375 RAPGEF3O95398 923 aa34.6■■■■□ 3.13
VPS36-203ENST00000475375 SAMD9Q5K651 1589 aa34.6■■■■□ 3.13
VPS36-203ENST00000475375 RANGAP1P46060 587 aaPredicted RBP34.58■■■■□ 3.13
VPS36-203ENST00000475375 NEO1Q92859 1461 aa34.53■■■■□ 3.12
VPS36-203ENST00000475375 ARID4BQ4LE39 1312 aaPredicted RBP34.5■■■■□ 3.11
VPS36-203ENST00000475375 PTPRMP28827 1452 aa34.48■■■■□ 3.11
VPS36-203ENST00000475375 NUP153P49790 1475 aaKnown RBP34.46■■■■□ 3.11
VPS36-203ENST00000475375 ADAMTSL3P82987 1691 aa34.45■■■■□ 3.11
VPS36-203ENST00000475375 FHOD3Q2V2M9 1422 aa34.45■■■■□ 3.11
VPS36-203ENST00000475375 FRMPD1Q5SYB0 1578 aa34.4■■■■□ 3.1
VPS36-203ENST00000475375 PLEKHD1A6NEE1 506 aa34.4■■■■□ 3.1
VPS36-203ENST00000475375 EEA1Q15075 1411 aa34.37■■■■□ 3.09
VPS36-203ENST00000475375 BCORL1Q5H9F3 1711 aa34.35■■■■□ 3.09
VPS36-203ENST00000475375 DENND4BO75064 1496 aaPredicted RBP34.33■■■■□ 3.09
VPS36-203ENST00000475375 MADDQ8WXG6 1647 aa34.33■■■■□ 3.09
VPS36-203ENST00000475375 FBXO41Q8TF61 875 aa34.31■■■■□ 3.08
VPS36-203ENST00000475375 AKNAQ7Z591 1439 aa34.3■■■■□ 3.08
VPS36-203ENST00000475375 ARHGEF40Q8TER5 1519 aa34.29■■■■□ 3.08
VPS36-203ENST00000475375 FANCAO15360 1455 aa34.28■■■■□ 3.08
VPS36-203ENST00000475375 PCF11O94913 1555 aaKnown RBP34.24■■■■□ 3.07
VPS36-203ENST00000475375 CFAP74Q9C0B2 1584 aa34.24■■■■□ 3.07
VPS36-203ENST00000475375 RICTORQ6R327 1708 aa34.23■■■■□ 3.07
VPS36-203ENST00000475375 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP34.23■■■■□ 3.07
VPS36-203ENST00000475375 PLPPR3Q6T4P5 718 aa34.21■■■■□ 3.07
VPS36-203ENST00000475375 EFCAB5A4FU69 1503 aa34.2■■■■□ 3.07
VPS36-203ENST00000475375 RIMS1Q86UR5 1692 aaKnown RBP34.2■■■■□ 3.07
VPS36-203ENST00000475375 LMTK3Q96Q04 1460 aa34.19■■■■□ 3.06
VPS36-203ENST00000475375 TTC37Q6PGP7 1564 aa34.19■■■■□ 3.06
VPS36-203ENST00000475375 POGZQ7Z3K3 1410 aa34.16■■■■□ 3.06
VPS36-203ENST00000475375 CDK13Q14004 1512 aaKnown RBP34.13■■■■□ 3.05
VPS36-203ENST00000475375 ZFYVE16Q7Z3T8 1539 aa34.13■■■■□ 3.05
VPS36-203ENST00000475375 ZMYM4Q5VZL5 1548 aa34.12■■■■□ 3.05
VPS36-203ENST00000475375 YEATS2Q9ULM3 1422 aa34.11■■■■□ 3.05
VPS36-203ENST00000475375 ATP1B4Q9UN42 357 aaPredicted RBP34.1■■■■□ 3.05
VPS36-203ENST00000475375 MLECQ14165 292 aa34.09■■■■□ 3.05
VPS36-203ENST00000475375 EHMT2Q96KQ7 1210 aa34.09■■■■□ 3.05
VPS36-203ENST00000475375 HSPA2P54652 639 aa34.08■■■■□ 3.05
VPS36-203ENST00000475375 MAGI2Q86UL8 1455 aa34.05■■■■□ 3.04
VPS36-203ENST00000475375 SCAPERQ9BY12 1400 aa34.04■■■■□ 3.04
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms