RNA–Protein interactions for RNA: ENST00000475375.1

VPS36-203, Transcript of vacuolar protein sorting 36 homolog, humanhuman

TSL 2

Gene VPS36, Length 754 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS36-203ENST00000475375 NISCHQ9Y2I1 1504 aa51.64■■■■■ 5.86
VPS36-203ENST00000475375 ABCC9O60706 1549 aa46.95■■■■■ 5.11
VPS36-203ENST00000475375 CCDC180Q9P1Z9 1646 aa46.46■■■■■ 5.03
VPS36-203ENST00000475375 RB1CC1Q8TDY2 1594 aa44.47■■■■■ 4.71
VPS36-203ENST00000475375 DNAJC5BQ9UF47 199 aa44.33■■■■■ 4.69
VPS36-203ENST00000475375 NACADO15069 1562 aa44.05■■■■■ 4.64
VPS36-203ENST00000475375 DCAF8L2P0C7V8 631 aa43.95■■■■■ 4.63
VPS36-203ENST00000475375 PABPN1Q86U42 306 aaKnown RBP eCLIP43.69■■■■■ 4.58
VPS36-203ENST00000475375 UNC13AQ9UPW8 1703 aa43.38■■■■■ 4.53
VPS36-203ENST00000475375 MYO15BQ96JP2 1530 aa43.25■■■■■ 4.51
VPS36-203ENST00000475375 BICRAQ9NZM4 1560 aa43.12■■■■■ 4.49
VPS36-203ENST00000475375 ZCCHC6Q5VYS8 1495 aaKnown RBP42.71■■■■■ 4.43
VPS36-203ENST00000475375 DCAF1Q9Y4B6 1507 aa42.58■■■■■ 4.41
VPS36-203ENST00000475375 SHROOM4Q9ULL8 1493 aa42.51■■■■■ 4.4
VPS36-203ENST00000475375 SCRIBQ14160 1630 aa42.41■■■■■ 4.38
VPS36-203ENST00000475375 CC2D2AQ9P2K1 1620 aa42.34■■■■■ 4.37
VPS36-203ENST00000475375 CECR2Q9BXF3 1484 aa42.31■■■■■ 4.36
VPS36-203ENST00000475375 EIF4G1Q04637 1599 aaKnown RBP42.14■■■■■ 4.34
VPS36-203ENST00000475375 DNAJC5Q9H3Z4 198 aa40.99■■■■■ 4.15
VPS36-203ENST00000475375 NCAPD3P42695 1498 aa40.66■■■■■ 4.1
VPS36-203ENST00000475375 ERCC6Q03468 1493 aa40.61■■■■■ 4.09
VPS36-203ENST00000475375 CUX2O14529 1486 aa40.57■■■■■ 4.08
VPS36-203ENST00000475375 ATAD2BQ9ULI0 1458 aa40.51■■■■■ 4.08
VPS36-203ENST00000475375 SMARCA2P51531 1590 aa40.39■■■■■ 4.06
VPS36-203ENST00000475375 SMARCA4P51532 1647 aa40.36■■■■■ 4.05
VPS36-203ENST00000475375 HMGXB3Q12766 1538 aa40.32■■■■■ 4.05
VPS36-203ENST00000475375 NESP48681 1621 aa40.2■■■■■ 4.03
VPS36-203ENST00000475375 BAZ1BQ9UIG0 1483 aaKnown RBP40.14■■■■■ 4.02
VPS36-203ENST00000475375 BAZ1AQ9NRL2 1556 aaPredicted RBP40.13■■■■■ 4.01
VPS36-203ENST00000475375 PEG3Q9GZU2 1588 aa39.92■■■■□ 3.98
VPS36-203ENST00000475375 LAMC3Q9Y6N6 1575 aa39.81■■■■□ 3.96
VPS36-203ENST00000475375 MROH2BQ7Z745 1585 aa39.8■■■■□ 3.96
VPS36-203ENST00000475375 THOC2Q8NI27 1593 aaKnown RBP39.8■■■■□ 3.96
VPS36-203ENST00000475375 PDS5BQ9NTI5 1447 aa39.65■■■■□ 3.94
VPS36-203ENST00000475375 KIF21AQ7Z4S6 1674 aa39.62■■■■□ 3.93
VPS36-203ENST00000475375 CADPSQ9ULU8 1353 aa39.46■■■■□ 3.91
VPS36-203ENST00000475375 MRC2Q9UBG0 1479 aa39.32■■■■□ 3.89
VPS36-203ENST00000475375 WIZO95785 1651 aa39.3■■■■□ 3.88
VPS36-203ENST00000475375 WDR62O43379 1518 aa39.19■■■■□ 3.86
VPS36-203ENST00000475375 TRIM41Q8WV44 630 aa39.17■■■■□ 3.86
VPS36-203ENST00000475375 CEP164Q9UPV0 1460 aa39.11■■■■□ 3.85
VPS36-203ENST00000475375 FANCD2Q9BXW9 1451 aa39.03■■■■□ 3.84
VPS36-203ENST00000475375 CFTRP13569 1480 aa38.89■■■■□ 3.82
VPS36-203ENST00000475375 RSF1Q96T23 1441 aaPredicted RBP38.85■■■■□ 3.81
VPS36-203ENST00000475375 TOP2AP11388 1531 aaKnown RBP38.79■■■■□ 3.8
VPS36-203ENST00000475375 OSCARQ8IYS5 282 aa38.71■■■■□ 3.79
VPS36-203ENST00000475375 URB2Q14146 1524 aaKnown RBP38.7■■■■□ 3.79
VPS36-203ENST00000475375 PRDM2Q13029 1718 aa38.42■■■■□ 3.74
VPS36-203ENST00000475375 CCDC88BA6NC98 1476 aa38.37■■■■□ 3.73
VPS36-203ENST00000475375 IFT140Q96RY7 1462 aa38.32■■■■□ 3.72
VPS36-203ENST00000475375 ZNF608Q9ULD9 1512 aaPredicted RBP38.3■■■■□ 3.72
VPS36-203ENST00000475375 TOPBP1Q92547 1522 aa38.22■■■■□ 3.71
VPS36-203ENST00000475375 RIMBP3CA6NJZ7 1639 aa38.2■■■■□ 3.7
VPS36-203ENST00000475375 RIMBP3BA6NNM3 1639 aa38.2■■■■□ 3.7
VPS36-203ENST00000475375 RIMBP3Q9UFD9 1639 aa38.2■■■■□ 3.7
VPS36-203ENST00000475375 ABCC8Q09428 1581 aa38.1■■■■□ 3.69
VPS36-203ENST00000475375 EIF4G3O43432 1585 aaKnown RBP38.06■■■■□ 3.68
VPS36-203ENST00000475375 ARHGEF11O15085 1522 aa38.05■■■■□ 3.68
VPS36-203ENST00000475375 DNMBPQ6XZF7 1577 aa38.04■■■■□ 3.68
VPS36-203ENST00000475375 AQRO60306 1485 aaKnown RBP eCLIP37.93■■■■□ 3.66
VPS36-203ENST00000475375 FBLN2P98095 1184 aa37.87■■■■□ 3.65
VPS36-203ENST00000475375 CYB5RLQ6IPT4 315 aa37.87■■■■□ 3.65
VPS36-203ENST00000475375 TARBP1Q13395 1621 aaKnown RBP37.87■■■■□ 3.65
VPS36-203ENST00000475375 CHD1O14646 1710 aa37.82■■■■□ 3.65
VPS36-203ENST00000475375 POLA1P09884 1462 aaPredicted RBP37.81■■■■□ 3.64
VPS36-203ENST00000475375 RAD54L2Q9Y4B4 1467 aa37.71■■■■□ 3.63
VPS36-203ENST00000475375 SOGA1O94964 1423 aa37.67■■■■□ 3.62
VPS36-203ENST00000475375 TDRD9Q8NDG6 1382 aaKnown RBP37.67■■■■□ 3.62
VPS36-203ENST00000475375 ARAP1Q96P48 1450 aa37.64■■■■□ 3.62
VPS36-203ENST00000475375 TRHP20396 242 aaPredicted RBP37.63■■■■□ 3.61
VPS36-203ENST00000475375 SNAPC4Q5SXM2 1469 aa37.53■■■■□ 3.6
VPS36-203ENST00000475375 FGD5Q6ZNL6 1462 aa37.53■■■■□ 3.6
VPS36-203ENST00000475375 CHMP7Q8WUX9 453 aaPredicted RBP37.48■■■■□ 3.59
VPS36-203ENST00000475375 WDR97A6NE52 1622 aa37.44■■■■□ 3.58
VPS36-203ENST00000475375 CUX1P39880 1505 aa37.42■■■■□ 3.58
VPS36-203ENST00000475375 MAGI1Q96QZ7 1491 aaPredicted RBP37.39■■■■□ 3.58
VPS36-203ENST00000475375 CLASP1Q7Z460 1538 aa37.37■■■■□ 3.57
VPS36-203ENST00000475375 GRIN2BQ13224 1484 aa37.37■■■■□ 3.57
VPS36-203ENST00000475375 SYNJ1O43426 1573 aa37.37■■■■□ 3.57
VPS36-203ENST00000475375 SYNJ2O15056 1496 aa37.28■■■■□ 3.56
VPS36-203ENST00000475375 GAPVD1Q14C86 1478 aa37.19■■■■□ 3.54
VPS36-203ENST00000475375 PBRM1Q86U86 1689 aa37.15■■■■□ 3.54
VPS36-203ENST00000475375 ABCA10Q8WWZ4 1543 aa37.06■■■■□ 3.52
VPS36-203ENST00000475375 ABCA5Q8WWZ7 1642 aa37.02■■■■□ 3.52
VPS36-203ENST00000475375 SUPT5HO00267 1087 aaKnown RBP37.01■■■■□ 3.52
VPS36-203ENST00000475375 WRNQ14191 1432 aaPredicted RBP eCLIP36.89■■■■□ 3.5
VPS36-203ENST00000475375 GRIN2AQ12879 1464 aa36.88■■■■□ 3.49
VPS36-203ENST00000475375 AEBP2Q6ZN18 517 aaPredicted RBP36.82■■■■□ 3.48
VPS36-203ENST00000475375 ERCC6L2Q5T890 1561 aa36.79■■■■□ 3.48
VPS36-203ENST00000475375 ADAMTS12P58397 1594 aa36.78■■■■□ 3.48
VPS36-203ENST00000475375 CEP170Q5SW79 1584 aa36.74■■■■□ 3.47
VPS36-203ENST00000475375 NUP160Q12769 1436 aa36.73■■■■□ 3.47
VPS36-203ENST00000475375 TOP2BQ02880 1626 aa36.7■■■■□ 3.47
VPS36-203ENST00000475375 FHAD1B1AJZ9 1412 aa36.7■■■■□ 3.47
VPS36-203ENST00000475375 BIVM-ERCC5R4GMW8 1640 aa36.68■■■■□ 3.46
VPS36-203ENST00000475375 ERICH3Q5RHP9 1530 aa36.59■■■■□ 3.45
VPS36-203ENST00000475375 SHROOM2Q13796 1616 aa36.58■■■■□ 3.45
VPS36-203ENST00000475375 PRG4Q92954 1404 aaPredicted RBP36.49■■■■□ 3.43
VPS36-203ENST00000475375 JPH4Q96JJ6 628 aa36.43■■■■□ 3.42
VPS36-203ENST00000475375 KIF13AQ9H1H9 1805 aa36.29■■■■□ 3.4
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms