RNA–Protein interactions for RNA: ENST00000474215.5

CKS1B-206, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

TSL 3

Gene CKS1B, Length 739 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-206ENST00000474215 SHROOM2Q13796 1616 aa19.1■□□□□ 0.65
CKS1B-206ENST00000474215 ERCC6L2Q5T890 1561 aa19.09■□□□□ 0.65
CKS1B-206ENST00000474215 PRG4Q92954 1404 aaPredicted RBP19.07■□□□□ 0.64
CKS1B-206ENST00000474215 TRHP20396 242 aaPredicted RBP19.04■□□□□ 0.64
CKS1B-206ENST00000474215 RUSC2Q8N2Y8 1516 aa19.04■□□□□ 0.64
CKS1B-206ENST00000474215 KIAA0586Q9BVV6 1533 aa19.04■□□□□ 0.64
CKS1B-206ENST00000474215 RAPGEF2Q9Y4G8 1499 aa18.95■□□□□ 0.62
CKS1B-206ENST00000474215 IQGAP2Q13576 1575 aa18.85■□□□□ 0.61
CKS1B-206ENST00000474215 CARMIL2Q6F5E8 1435 aa18.85■□□□□ 0.61
CKS1B-206ENST00000474215 NPM1P06748 294 aaKnown RBP eCLIP18.83■□□□□ 0.6
CKS1B-206ENST00000474215 PRXQ9BXM0 1461 aa18.83■□□□□ 0.6
CKS1B-206ENST00000474215 PTPRGP23470 1445 aa18.83■□□□□ 0.6
CKS1B-206ENST00000474215 CSRNP3Q8WYN3 585 aa18.81■□□□□ 0.6
CKS1B-206ENST00000474215 TNIKQ9UKE5 1360 aa18.81■□□□□ 0.6
CKS1B-206ENST00000474215 TTBK1Q5TCY1 1321 aaPredicted RBP18.8■□□□□ 0.6
CKS1B-206ENST00000474215 DISP1Q96F81 1524 aa18.77■□□□□ 0.6
CKS1B-206ENST00000474215 UGGT2Q9NYU1 1516 aa18.76■□□□□ 0.59
CKS1B-206ENST00000474215 ADCY10Q96PN6 1610 aa18.75■□□□□ 0.59
CKS1B-206ENST00000474215 EEA1Q15075 1411 aa18.74■□□□□ 0.59
CKS1B-206ENST00000474215 FAM9AQ8IZU1 332 aaPredicted RBP18.7■□□□□ 0.58
CKS1B-206ENST00000474215 CTTNBP2Q8WZ74 1663 aa18.69■□□□□ 0.58
CKS1B-206ENST00000474215 MAPKBP1O60336 1514 aa18.69■□□□□ 0.58
CKS1B-206ENST00000474215 UACAQ9BZF9 1416 aa18.67■□□□□ 0.58
CKS1B-206ENST00000474215 FAM69CQ0P6D2 419 aa18.67■□□□□ 0.58
CKS1B-206ENST00000474215 KIAA0556O60303 1618 aa18.67■□□□□ 0.58
CKS1B-206ENST00000474215 UHRF1BP1LA0JNW5 1464 aa18.66■□□□□ 0.58
CKS1B-206ENST00000474215 GOLGA3Q08378 1498 aa18.66■□□□□ 0.58
CKS1B-206ENST00000474215 ABCC10Q5T3U5 1492 aa18.65■□□□□ 0.58
CKS1B-206ENST00000474215 ABCC2Q92887 1545 aa18.65■□□□□ 0.58
CKS1B-206ENST00000474215 KIF13AQ9H1H9 1805 aa18.61■□□□□ 0.57
CKS1B-206ENST00000474215 DIP2BQ9P265 1576 aa18.57■□□□□ 0.56
CKS1B-206ENST00000474215 P3H3Q8IVL6 736 aa18.57■□□□□ 0.56
CKS1B-206ENST00000474215 KDM5BQ9UGL1 1544 aa18.57■□□□□ 0.56
CKS1B-206ENST00000474215 ASXL2Q76L83 1435 aa18.57■□□□□ 0.56
CKS1B-206ENST00000474215 PLB1Q6P1J6 1458 aa18.56■□□□□ 0.56
CKS1B-206ENST00000474215 KIF21BO75037 1637 aa18.52■□□□□ 0.55
CKS1B-206ENST00000474215 RANGAP1P46060 587 aaPredicted RBP18.51■□□□□ 0.55
CKS1B-206ENST00000474215 ABCA8O94911 1581 aa18.5■□□□□ 0.55
CKS1B-206ENST00000474215 ZCCHC11Q5TAX3 1644 aaKnown RBP18.49■□□□□ 0.55
CKS1B-206ENST00000474215 SAMD9Q5K651 1589 aa18.47■□□□□ 0.55
CKS1B-206ENST00000474215 UBTFP17480 764 aaKnown RBP18.47■□□□□ 0.55
CKS1B-206ENST00000474215 EHMT2Q96KQ7 1210 aa18.47■□□□□ 0.55
CKS1B-206ENST00000474215 GLI2P10070 1586 aa18.46■□□□□ 0.55
CKS1B-206ENST00000474215 EPRSP07814 1512 aaKnown RBP18.44■□□□□ 0.54
CKS1B-206ENST00000474215 WDR7Q9Y4E6 1490 aa18.42■□□□□ 0.54
CKS1B-206ENST00000474215 TSPOAP1O95153 1857 aa18.4■□□□□ 0.54
CKS1B-206ENST00000474215 ARID3CA6NKF2 412 aa18.4■□□□□ 0.54
CKS1B-206ENST00000474215 KCNH8Q96L42 1107 aa18.4■□□□□ 0.54
CKS1B-206ENST00000474215 FHOD3Q2V2M9 1422 aa18.4■□□□□ 0.54
CKS1B-206ENST00000474215 ATP10BO94823 1461 aa18.39■□□□□ 0.53
CKS1B-206ENST00000474215 EFCAB5A4FU69 1503 aa18.37■□□□□ 0.53
CKS1B-206ENST00000474215 RAPGEF6Q8TEU7 1601 aa18.34■□□□□ 0.53
CKS1B-206ENST00000474215 KDM6BO15054 1643 aa18.34■□□□□ 0.53
CKS1B-206ENST00000474215 MAP3K4Q9Y6R4 1608 aa18.34■□□□□ 0.53
CKS1B-206ENST00000474215 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.33■□□□□ 0.52
CKS1B-206ENST00000474215 HNRNPUL2Q1KMD3 747 aaKnown RBP18.33■□□□□ 0.52
CKS1B-206ENST00000474215 PPRC1Q5VV67 1664 aaKnown RBP18.32■□□□□ 0.52
CKS1B-206ENST00000474215 NUP153P49790 1475 aaKnown RBP18.31■□□□□ 0.52
CKS1B-206ENST00000474215 TEX14Q8IWB6 1497 aa18.31■□□□□ 0.52
CKS1B-206ENST00000474215 CD109Q6YHK3 1445 aa18.31■□□□□ 0.52
CKS1B-206ENST00000474215 ARHGAP35Q9NRY4 1499 aa18.26■□□□□ 0.51
CKS1B-206ENST00000474215 PLEKHD1A6NEE1 506 aa18.26■□□□□ 0.51
CKS1B-206ENST00000474215 MAGI3Q5TCQ9 1506 aa18.25■□□□□ 0.51
CKS1B-206ENST00000474215 COL17A1Q9UMD9 1497 aaPredicted RBP18.25■□□□□ 0.51
CKS1B-206ENST00000474215 CFAP43Q8NDM7 1665 aa18.25■□□□□ 0.51
CKS1B-206ENST00000474215 FMN1Q68DA7 1419 aa18.24■□□□□ 0.51
CKS1B-206ENST00000474215 ATP1B4Q9UN42 357 aaPredicted RBP18.22■□□□□ 0.51
CKS1B-206ENST00000474215 ABCA9Q8IUA7 1624 aa18.18■□□□□ 0.5
CKS1B-206ENST00000474215 PHLDB1Q86UU1 1377 aa18.15■□□□□ 0.5
CKS1B-206ENST00000474215 CDK13Q14004 1512 aaKnown RBP18.14■□□□□ 0.49
CKS1B-206ENST00000474215 CDK11AQ9UQ88 783 aaPredicted RBP18.13■□□□□ 0.49
CKS1B-206ENST00000474215 ARAP3Q8WWN8 1544 aa18.12■□□□□ 0.49
CKS1B-206ENST00000474215 HECW1Q76N89 1606 aa18.12■□□□□ 0.49
CKS1B-206ENST00000474215 CLIP1P30622 1438 aa18.11■□□□□ 0.49
CKS1B-206ENST00000474215 NEO1Q92859 1461 aa18.09■□□□□ 0.49
CKS1B-206ENST00000474215 KDM4FA0A1W2PPD8 638 aa18.09■□□□□ 0.49
CKS1B-206ENST00000474215 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.08■□□□□ 0.48
CKS1B-206ENST00000474215 CASKIN1Q8WXD9 1431 aa18.07■□□□□ 0.48
CKS1B-206ENST00000474215 RAPGEF3O95398 923 aa18.05■□□□□ 0.48
CKS1B-206ENST00000474215 TROQ12816 1431 aaPredicted RBP18.02■□□□□ 0.48
CKS1B-206ENST00000474215 TTC37Q6PGP7 1564 aa18.02■□□□□ 0.48
CKS1B-206ENST00000474215 FANCAO15360 1455 aa18.01■□□□□ 0.47
CKS1B-206ENST00000474215 AKNAQ7Z591 1439 aa18.01■□□□□ 0.47
CKS1B-206ENST00000474215 CCDC18Q5T9S5 1454 aa18.01■□□□□ 0.47
CKS1B-206ENST00000474215 PCF11O94913 1555 aaKnown RBP18■□□□□ 0.47
CKS1B-206ENST00000474215 PLCH2O75038 1416 aa18■□□□□ 0.47
CKS1B-206ENST00000474215 FYCO1Q9BQS8 1478 aa18■□□□□ 0.47
CKS1B-206ENST00000474215 LRRIQ1Q96JM4 1722 aa17.98■□□□□ 0.47
CKS1B-206ENST00000474215 LOC105371045A0A1W2PR82 267 aa17.98■□□□□ 0.47
CKS1B-206ENST00000474215 EFCAB2Q5VUJ9 269 aa17.98■□□□□ 0.47
CKS1B-206ENST00000474215 DENND4BO75064 1496 aaPredicted RBP17.97■□□□□ 0.47
CKS1B-206ENST00000474215 ADGRL1O94910 1474 aa17.97■□□□□ 0.47
CKS1B-206ENST00000474215 CEP162Q5TB80 1403 aa17.97■□□□□ 0.47
CKS1B-206ENST00000474215 CFAP74Q9C0B2 1584 aa17.96■□□□□ 0.46
CKS1B-206ENST00000474215 KIF14Q15058 1648 aa17.95■□□□□ 0.46
CKS1B-206ENST00000474215 FRMPD1Q5SYB0 1578 aa17.92■□□□□ 0.46
CKS1B-206ENST00000474215 SCAPERQ9BY12 1400 aa17.92■□□□□ 0.46
CKS1B-206ENST00000474215 MYO5CQ9NQX4 1742 aa17.89■□□□□ 0.46
CKS1B-206ENST00000474215 ARHGAP5Q13017 1502 aa17.88■□□□□ 0.45
CKS1B-206ENST00000474215 RICTORQ6R327 1708 aa17.87■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms