RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 HFM1A2PYH4 1435 aa7.85□□□□□ -1.15
SYNE1-220ENST00000471834 KIF27Q86VH2 1401 aa7.84□□□□□ -1.15
SYNE1-220ENST00000471834 LRRC9Q6ZRR7 1453 aa7.82□□□□□ -1.16
SYNE1-220ENST00000471834 DENND4BO75064 1496 aaPredicted RBP7.82□□□□□ -1.16
SYNE1-220ENST00000471834 RNF123Q5XPI4 1314 aa7.82□□□□□ -1.16
SYNE1-220ENST00000471834 RANGAP1P46060 587 aaPredicted RBP7.82□□□□□ -1.16
SYNE1-220ENST00000471834 TCOF1Q13428 1488 aaKnown RBP7.81□□□□□ -1.16
SYNE1-220ENST00000471834 FANCIQ9NVI1 1328 aa7.81□□□□□ -1.16
SYNE1-220ENST00000471834 CFAP43Q8NDM7 1665 aa7.81□□□□□ -1.16
SYNE1-220ENST00000471834 ZMYM4Q5VZL5 1548 aa7.81□□□□□ -1.16
SYNE1-220ENST00000471834 FHAD1B1AJZ9 1412 aa7.81□□□□□ -1.16
SYNE1-220ENST00000471834 SNAPC4Q5SXM2 1469 aa7.81□□□□□ -1.16
SYNE1-220ENST00000471834 ANP32EQ9BTT0 268 aa7.81□□□□□ -1.16
SYNE1-220ENST00000471834 ABCA10Q8WWZ4 1543 aa7.8□□□□□ -1.16
SYNE1-220ENST00000471834 FGD5Q6ZNL6 1462 aa7.8□□□□□ -1.16
SYNE1-220ENST00000471834 INSRP06213 1382 aa7.8□□□□□ -1.16
SYNE1-220ENST00000471834 FYCO1Q9BQS8 1478 aa7.79□□□□□ -1.16
SYNE1-220ENST00000471834 CASKIN1Q8WXD9 1431 aa7.79□□□□□ -1.16
SYNE1-220ENST00000471834 SPATA31E1Q6ZUB1 1445 aa7.78□□□□□ -1.16
SYNE1-220ENST00000471834 SETD5Q9C0A6 1442 aa7.77□□□□□ -1.17
SYNE1-220ENST00000471834 UACAQ9BZF9 1416 aa7.77□□□□□ -1.17
SYNE1-220ENST00000471834 PHLDB1Q86UU1 1377 aa7.76□□□□□ -1.17
SYNE1-220ENST00000471834 SAMD9Q5K651 1589 aa7.76□□□□□ -1.17
SYNE1-220ENST00000471834 GAPVD1Q14C86 1478 aa7.76□□□□□ -1.17
SYNE1-220ENST00000471834 ABCA5Q8WWZ7 1642 aa7.76□□□□□ -1.17
SYNE1-220ENST00000471834 APLP2Q06481 763 aa7.75□□□□□ -1.17
SYNE1-220ENST00000471834 RAB3GAP2Q9H2M9 1393 aa7.75□□□□□ -1.17
SYNE1-220ENST00000471834 KANK4Q5T7N3 995 aaPredicted RBP7.73□□□□□ -1.17
SYNE1-220ENST00000471834 MYT1LQ9UL68 1186 aa7.73□□□□□ -1.17
SYNE1-220ENST00000471834 NAIPQ13075 1403 aa7.72□□□□□ -1.17
SYNE1-220ENST00000471834 ERICH6Q7L0X2 663 aa7.71□□□□□ -1.18
SYNE1-220ENST00000471834 CADPSQ9ULU8 1353 aa7.71□□□□□ -1.18
SYNE1-220ENST00000471834 CC2D2AQ9P2K1 1620 aa7.7□□□□□ -1.18
SYNE1-220ENST00000471834 GRIN2BQ13224 1484 aa7.7□□□□□ -1.18
SYNE1-220ENST00000471834 MBD5Q9P267 1494 aa7.7□□□□□ -1.18
SYNE1-220ENST00000471834 FGD6Q6ZV73 1430 aa7.7□□□□□ -1.18
SYNE1-220ENST00000471834 MIA2Q96PC5 1412 aa7.7□□□□□ -1.18
SYNE1-220ENST00000471834 ATP1B4Q9UN42 357 aaPredicted RBP7.69□□□□□ -1.18
SYNE1-220ENST00000471834 WDR97A6NE52 1622 aa7.69□□□□□ -1.18
SYNE1-220ENST00000471834 PTPRKQ15262 1439 aa7.68□□□□□ -1.18
SYNE1-220ENST00000471834 NCOA1Q15788 1441 aa7.68□□□□□ -1.18
SYNE1-220ENST00000471834 TEX14Q8IWB6 1497 aa7.67□□□□□ -1.18
SYNE1-220ENST00000471834 ROCK1Q13464 1354 aa7.67□□□□□ -1.18
SYNE1-220ENST00000471834 YTHDC1Q96MU7 727 aaKnown RBP7.66□□□□□ -1.18
SYNE1-220ENST00000471834 FMN1Q68DA7 1419 aa7.66□□□□□ -1.18
SYNE1-220ENST00000471834 PTPN23Q9H3S7 1636 aa7.65□□□□□ -1.18
SYNE1-220ENST00000471834 PRDM2Q13029 1718 aa7.65□□□□□ -1.19
SYNE1-220ENST00000471834 MYOM3Q5VTT5 1437 aa7.65□□□□□ -1.19
SYNE1-220ENST00000471834 UGGT2Q9NYU1 1516 aa7.65□□□□□ -1.19
SYNE1-220ENST00000471834 ARID4BQ4LE39 1312 aaPredicted RBP7.65□□□□□ -1.19
SYNE1-220ENST00000471834 CUL7Q14999 1698 aa7.64□□□□□ -1.19
SYNE1-220ENST00000471834 CARMIL1Q5VZK9 1371 aa7.63□□□□□ -1.19
SYNE1-220ENST00000471834 HECW1Q76N89 1606 aa7.63□□□□□ -1.19
SYNE1-220ENST00000471834 DNMBPQ6XZF7 1577 aa7.63□□□□□ -1.19
SYNE1-220ENST00000471834 UHRF1BP1Q6BDS2 1440 aa7.63□□□□□ -1.19
SYNE1-220ENST00000471834 PCF11O94913 1555 aaKnown RBP7.63□□□□□ -1.19
SYNE1-220ENST00000471834 RPRD2Q5VT52 1461 aaKnown RBP7.62□□□□□ -1.19
SYNE1-220ENST00000471834 C11orf95C9JLR9 678 aaPredicted RBP7.62□□□□□ -1.19
SYNE1-220ENST00000471834 ADGRL2O95490 1459 aa7.61□□□□□ -1.19
SYNE1-220ENST00000471834 LRPPRCP42704 1394 aaKnown RBP7.61□□□□□ -1.19
SYNE1-220ENST00000471834 PTPRGP23470 1445 aa7.6□□□□□ -1.19
SYNE1-220ENST00000471834 EHBP1L1Q8N3D4 1523 aa7.6□□□□□ -1.19
SYNE1-220ENST00000471834 UBTFP17480 764 aaKnown RBP7.6□□□□□ -1.19
SYNE1-220ENST00000471834 GCC2Q8IWJ2 1684 aa7.6□□□□□ -1.19
SYNE1-220ENST00000471834 KDM5DQ9BY66 1539 aa7.59□□□□□ -1.19
SYNE1-220ENST00000471834 RBM19Q9Y4C8 960 aaKnown RBP7.59□□□□□ -1.19
SYNE1-220ENST00000471834 ARHGEF12Q9NZN5 1544 aa7.59□□□□□ -1.19
SYNE1-220ENST00000471834 DHX29Q7Z478 1369 aaKnown RBP7.59□□□□□ -1.19
SYNE1-220ENST00000471834 MSH5O43196 834 aa7.59□□□□□ -1.19
SYNE1-220ENST00000471834 KIF21AQ7Z4S6 1674 aa7.59□□□□□ -1.2
SYNE1-220ENST00000471834 CNTLNQ9NXG0 1405 aa7.58□□□□□ -1.2
SYNE1-220ENST00000471834 KTN1Q86UP2 1357 aaKnown RBP7.58□□□□□ -1.2
SYNE1-220ENST00000471834 POLA1P09884 1462 aaPredicted RBP7.58□□□□□ -1.2
SYNE1-220ENST00000471834 ANKRD30BQ9BXX2 1392 aa7.57□□□□□ -1.2
SYNE1-220ENST00000471834 WASHC2AQ641Q2 1341 aa7.57□□□□□ -1.2
SYNE1-220ENST00000471834 GPRASP1Q5JY77 1395 aa7.56□□□□□ -1.2
SYNE1-220ENST00000471834 SMG6Q86US8 1419 aaKnown RBP7.56□□□□□ -1.2
SYNE1-220ENST00000471834 BCL11AQ9H165 835 aa7.56□□□□□ -1.2
SYNE1-220ENST00000471834 ZBED9Q6R2W3 1325 aa7.55□□□□□ -1.2
SYNE1-220ENST00000471834 TOPBP1Q92547 1522 aa7.55□□□□□ -1.2
SYNE1-220ENST00000471834 MAGI3Q5TCQ9 1506 aa7.55□□□□□ -1.2
SYNE1-220ENST00000471834 ATP10AO60312 1499 aa7.55□□□□□ -1.2
SYNE1-220ENST00000471834 ABCC10Q5T3U5 1492 aa7.53□□□□□ -1.2
SYNE1-220ENST00000471834 WASHC2CQ9Y4E1 1318 aa7.53□□□□□ -1.2
SYNE1-220ENST00000471834 HNRNPUL2Q1KMD3 747 aaKnown RBP7.52□□□□□ -1.2
SYNE1-220ENST00000471834 SHANK2Q9UPX8 1470 aa7.52□□□□□ -1.21
SYNE1-220ENST00000471834 CCDC7Q96M83 1385 aa7.51□□□□□ -1.21
SYNE1-220ENST00000471834 IQGAP2Q13576 1575 aa7.5□□□□□ -1.21
SYNE1-220ENST00000471834 PHF23Q9BUL5 403 aaPredicted RBP7.5□□□□□ -1.21
SYNE1-220ENST00000471834 PRKRIP1Q9H875 184 aaPredicted RBP7.49□□□□□ -1.21
SYNE1-220ENST00000471834 CCDC144AA2RUR9 1427 aa7.49□□□□□ -1.21
SYNE1-220ENST00000471834 PZPP20742 1482 aa7.48□□□□□ -1.21
SYNE1-220ENST00000471834 POLR1AO95602 1720 aaPredicted RBP7.48□□□□□ -1.21
SYNE1-220ENST00000471834 WDR62O43379 1518 aa7.48□□□□□ -1.21
SYNE1-220ENST00000471834 LAMC3Q9Y6N6 1575 aa7.48□□□□□ -1.21
SYNE1-220ENST00000471834 LAMC1P11047 1609 aa7.48□□□□□ -1.21
SYNE1-220ENST00000471834 KCNH8Q96L42 1107 aa7.48□□□□□ -1.21
SYNE1-220ENST00000471834 NEURL4Q96JN8 1562 aa7.47□□□□□ -1.21
SYNE1-220ENST00000471834 ZMYM3Q14202 1370 aa7.47□□□□□ -1.21
SYNE1-220ENST00000471834 PPP4R2Q9NY27 417 aa7.47□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms