RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 NISCHQ9Y2I1 1504 aa11.11□□□□□ -0.63
SYNE1-220ENST00000471834 DCAF1Q9Y4B6 1507 aa9.59□□□□□ -0.87
SYNE1-220ENST00000471834 ZCCHC6Q5VYS8 1495 aaKnown RBP9.58□□□□□ -0.88
SYNE1-220ENST00000471834 CCDC180Q9P1Z9 1646 aa9.43□□□□□ -0.9
SYNE1-220ENST00000471834 MYO15BQ96JP2 1530 aa9.35□□□□□ -0.91
SYNE1-220ENST00000471834 HRCP23327 699 aa9.21□□□□□ -0.94
SYNE1-220ENST00000471834 CHIC1Q5VXU3 224 aa9.13□□□□□ -0.95
SYNE1-220ENST00000471834 ABCC9O60706 1549 aa8.99□□□□□ -0.97
SYNE1-220ENST00000471834 EIF4G1Q04637 1599 aaKnown RBP8.85□□□□□ -0.99
SYNE1-220ENST00000471834 RSF1Q96T23 1441 aaPredicted RBP8.84□□□□□ -0.99
SYNE1-220ENST00000471834 PELP1Q8IZL8 1130 aaKnown RBP8.83□□□□□ -1
SYNE1-220ENST00000471834 WRNQ14191 1432 aaPredicted RBP eCLIP8.81□□□□□ -1
SYNE1-220ENST00000471834 RB1CC1Q8TDY2 1594 aa8.76□□□□□ -1.01
SYNE1-220ENST00000471834 ZEB1P37275 1124 aaPredicted RBP8.72□□□□□ -1.01
SYNE1-220ENST00000471834 TRIM26Q12899 539 aaPredicted RBP8.7□□□□□ -1.02
SYNE1-220ENST00000471834 DCAF8L2P0C7V8 631 aa8.66□□□□□ -1.02
SYNE1-220ENST00000471834 SHROOM4Q9ULL8 1493 aa8.61□□□□□ -1.03
SYNE1-220ENST00000471834 SUPT5HO00267 1087 aaKnown RBP8.61□□□□□ -1.03
SYNE1-220ENST00000471834 EEA1Q15075 1411 aa8.61□□□□□ -1.03
SYNE1-220ENST00000471834 NACADO15069 1562 aa8.6□□□□□ -1.03
SYNE1-220ENST00000471834 PEG3Q9GZU2 1588 aa8.55□□□□□ -1.04
SYNE1-220ENST00000471834 BAZ1AQ9NRL2 1556 aaPredicted RBP8.54□□□□□ -1.04
SYNE1-220ENST00000471834 PCGF6Q9BYE7 350 aa8.53□□□□□ -1.04
SYNE1-220ENST00000471834 MYT1Q01538 1121 aa8.49□□□□□ -1.05
SYNE1-220ENST00000471834 MROH2BQ7Z745 1585 aa8.48□□□□□ -1.05
SYNE1-220ENST00000471834 TNIKQ9UKE5 1360 aa8.48□□□□□ -1.05
SYNE1-220ENST00000471834 PPARGC1BQ86YN6 1023 aaKnown RBP8.47□□□□□ -1.05
SYNE1-220ENST00000471834 CUX2O14529 1486 aa8.46□□□□□ -1.06
SYNE1-220ENST00000471834 CECR2Q9BXF3 1484 aa8.44□□□□□ -1.06
SYNE1-220ENST00000471834 SCAF1Q9H7N4 1312 aaKnown RBP8.44□□□□□ -1.06
SYNE1-220ENST00000471834 TOP2AP11388 1531 aaKnown RBP8.44□□□□□ -1.06
SYNE1-220ENST00000471834 TRIM41Q8WV44 630 aa8.43□□□□□ -1.06
SYNE1-220ENST00000471834 CLSPNQ9HAW4 1339 aa8.43□□□□□ -1.06
SYNE1-220ENST00000471834 LOC105371045A0A1W2PR82 267 aa8.38□□□□□ -1.07
SYNE1-220ENST00000471834 ACIN1Q9UKV3 1341 aaKnown RBP8.37□□□□□ -1.07
SYNE1-220ENST00000471834 BAZ1BQ9UIG0 1483 aaKnown RBP8.36□□□□□ -1.07
SYNE1-220ENST00000471834 SMARCA2P51531 1590 aa8.35□□□□□ -1.07
SYNE1-220ENST00000471834 KIF21BO75037 1637 aa8.34□□□□□ -1.07
SYNE1-220ENST00000471834 CEP162Q5TB80 1403 aa8.29□□□□□ -1.08
SYNE1-220ENST00000471834 MAP3K1Q13233 1512 aa8.28□□□□□ -1.08
SYNE1-220ENST00000471834 EHMT2Q96KQ7 1210 aa8.28□□□□□ -1.08
SYNE1-220ENST00000471834 SMARCA4P51532 1647 aa8.27□□□□□ -1.09
SYNE1-220ENST00000471834 PRXQ9BXM0 1461 aa8.27□□□□□ -1.09
SYNE1-220ENST00000471834 VPS8Q8N3P4 1428 aa8.26□□□□□ -1.09
SYNE1-220ENST00000471834 ERICH3Q5RHP9 1530 aa8.26□□□□□ -1.09
SYNE1-220ENST00000471834 CCDC88BA6NC98 1476 aa8.26□□□□□ -1.09
SYNE1-220ENST00000471834 FAM9AQ8IZU1 332 aaPredicted RBP8.26□□□□□ -1.09
SYNE1-220ENST00000471834 GOLGA3Q08378 1498 aa8.24□□□□□ -1.09
SYNE1-220ENST00000471834 SCRIBQ14160 1630 aa8.23□□□□□ -1.09
SYNE1-220ENST00000471834 CEP164Q9UPV0 1460 aa8.23□□□□□ -1.09
SYNE1-220ENST00000471834 AEBP2Q6ZN18 517 aaPredicted RBP8.23□□□□□ -1.09
SYNE1-220ENST00000471834 NEUROD1Q13562 356 aa8.22□□□□□ -1.09
SYNE1-220ENST00000471834 RRBP1Q9P2E9 1410 aaKnown RBP8.22□□□□□ -1.09
SYNE1-220ENST00000471834 WIZO95785 1651 aa8.21□□□□□ -1.1
SYNE1-220ENST00000471834 CLIP1P30622 1438 aa8.18□□□□□ -1.1
SYNE1-220ENST00000471834 TTBK1Q5TCY1 1321 aaPredicted RBP8.18□□□□□ -1.1
SYNE1-220ENST00000471834 BICRAQ9NZM4 1560 aa8.17□□□□□ -1.1
SYNE1-220ENST00000471834 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.17□□□□□ -1.1
SYNE1-220ENST00000471834 SOGA1O94964 1423 aa8.16□□□□□ -1.1
SYNE1-220ENST00000471834 CSRNP3Q8WYN3 585 aa8.15□□□□□ -1.1
SYNE1-220ENST00000471834 TIMELESSQ9UNS1 1208 aa8.12□□□□□ -1.11
SYNE1-220ENST00000471834 BIVM-ERCC5R4GMW8 1640 aa8.11□□□□□ -1.11
SYNE1-220ENST00000471834 SYNJ1O43426 1573 aa8.11□□□□□ -1.11
SYNE1-220ENST00000471834 TOP2BQ02880 1626 aa8.11□□□□□ -1.11
SYNE1-220ENST00000471834 DHX57Q6P158 1386 aaKnown RBP8.11□□□□□ -1.11
SYNE1-220ENST00000471834 ZNF316A6NFI3 1004 aaPredicted RBP8.11□□□□□ -1.11
SYNE1-220ENST00000471834 HMGXB3Q12766 1538 aa8.1□□□□□ -1.11
SYNE1-220ENST00000471834 ATAD2BQ9ULI0 1458 aa8.09□□□□□ -1.11
SYNE1-220ENST00000471834 NCAPD3P42695 1498 aa8.08□□□□□ -1.12
SYNE1-220ENST00000471834 CENPBP07199 599 aaPredicted RBP8.08□□□□□ -1.12
SYNE1-220ENST00000471834 ABCC8Q09428 1581 aa8.08□□□□□ -1.12
SYNE1-220ENST00000471834 RUSC2Q8N2Y8 1516 aa8.07□□□□□ -1.12
SYNE1-220ENST00000471834 DIEXFQ68CQ4 756 aaKnown RBP8.06□□□□□ -1.12
SYNE1-220ENST00000471834 ARAP1Q96P48 1450 aa8.03□□□□□ -1.12
SYNE1-220ENST00000471834 MAPKBP1O60336 1514 aa8.01□□□□□ -1.13
SYNE1-220ENST00000471834 AQRO60306 1485 aaKnown RBP eCLIP8.01□□□□□ -1.13
SYNE1-220ENST00000471834 KDM5BQ9UGL1 1544 aa8□□□□□ -1.13
SYNE1-220ENST00000471834 CFTRP13569 1480 aa8□□□□□ -1.13
SYNE1-220ENST00000471834 GTF3C3Q9Y5Q9 886 aa8□□□□□ -1.13
SYNE1-220ENST00000471834 AKNAQ7Z591 1439 aa8□□□□□ -1.13
SYNE1-220ENST00000471834 RAPGEF2Q9Y4G8 1499 aa7.98□□□□□ -1.13
SYNE1-220ENST00000471834 ARHGEF11O15085 1522 aa7.94□□□□□ -1.14
SYNE1-220ENST00000471834 ARHGAP35Q9NRY4 1499 aa7.93□□□□□ -1.14
SYNE1-220ENST00000471834 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.93□□□□□ -1.14
SYNE1-220ENST00000471834 MIER1Q8N108 512 aa7.9□□□□□ -1.14
SYNE1-220ENST00000471834 ERICH6BQ5W0A0 696 aa7.9□□□□□ -1.15
SYNE1-220ENST00000471834 TIAM1Q13009 1591 aa7.89□□□□□ -1.15
SYNE1-220ENST00000471834 CCER2I3L3R5 266 aa7.88□□□□□ -1.15
SYNE1-220ENST00000471834 CCER1Q8TC90 406 aaPredicted RBP7.88□□□□□ -1.15
SYNE1-220ENST00000471834 NCOA2Q15596 1464 aa7.87□□□□□ -1.15
SYNE1-220ENST00000471834 CCNB3Q8WWL7 1395 aa7.87□□□□□ -1.15
SYNE1-220ENST00000471834 THOC2Q8NI27 1593 aaKnown RBP7.87□□□□□ -1.15
SYNE1-220ENST00000471834 CUX1P39880 1505 aa7.87□□□□□ -1.15
SYNE1-220ENST00000471834 TSHZ2Q9NRE2 1034 aa7.86□□□□□ -1.15
SYNE1-220ENST00000471834 EFCAB5A4FU69 1503 aa7.86□□□□□ -1.15
SYNE1-220ENST00000471834 SUPT16HQ9Y5B9 1047 aaKnown RBP7.86□□□□□ -1.15
SYNE1-220ENST00000471834 PPP1R15AO75807 674 aaPredicted RBP7.85□□□□□ -1.15
SYNE1-220ENST00000471834 CCDC18Q5T9S5 1454 aa7.85□□□□□ -1.15
SYNE1-220ENST00000471834 UNC13AQ9UPW8 1703 aa7.85□□□□□ -1.15
SYNE1-220ENST00000471834 IGF1RP08069 1367 aa7.85□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms