RNA–Protein interactions for RNA: ENST00000471488.1

HDAC1-204, Transcript of histone deacetylase 1, humanhuman

TSL 5

Gene HDAC1, Length 726 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-204ENST00000471488 SHROOM2Q13796 1616 aa12.42□□□□□ -0.42
HDAC1-204ENST00000471488 KDM4FA0A1W2PPD8 638 aa12.42□□□□□ -0.42
HDAC1-204ENST00000471488 TSPOAP1O95153 1857 aa12.4□□□□□ -0.42
HDAC1-204ENST00000471488 KDM6BO15054 1643 aa12.4□□□□□ -0.42
HDAC1-204ENST00000471488 ABCC10Q5T3U5 1492 aa12.39□□□□□ -0.43
HDAC1-204ENST00000471488 DIP2BQ9P265 1576 aa12.35□□□□□ -0.43
HDAC1-204ENST00000471488 ERICH3Q5RHP9 1530 aa12.35□□□□□ -0.43
HDAC1-204ENST00000471488 TOP2BQ02880 1626 aa12.33□□□□□ -0.44
HDAC1-204ENST00000471488 ADCY10Q96PN6 1610 aa12.33□□□□□ -0.44
HDAC1-204ENST00000471488 MAPKBP1O60336 1514 aa12.32□□□□□ -0.44
HDAC1-204ENST00000471488 BIVM-ERCC5R4GMW8 1640 aa12.31□□□□□ -0.44
HDAC1-204ENST00000471488 RUSC2Q8N2Y8 1516 aa12.31□□□□□ -0.44
HDAC1-204ENST00000471488 ADGRL1O94910 1474 aa12.26□□□□□ -0.45
HDAC1-204ENST00000471488 PTPRGP23470 1445 aa12.23□□□□□ -0.45
HDAC1-204ENST00000471488 KIAA0586Q9BVV6 1533 aa12.21□□□□□ -0.46
HDAC1-204ENST00000471488 ASXL2Q76L83 1435 aa12.2□□□□□ -0.46
HDAC1-204ENST00000471488 HECW2Q9P2P5 1572 aa12.18□□□□□ -0.46
HDAC1-204ENST00000471488 CARMIL2Q6F5E8 1435 aa12.17□□□□□ -0.46
HDAC1-204ENST00000471488 ABCC2Q92887 1545 aa12.16□□□□□ -0.46
HDAC1-204ENST00000471488 CUL7Q14999 1698 aa12.16□□□□□ -0.46
HDAC1-204ENST00000471488 PLB1Q6P1J6 1458 aa12.15□□□□□ -0.46
HDAC1-204ENST00000471488 TNIKQ9UKE5 1360 aa12.15□□□□□ -0.46
HDAC1-204ENST00000471488 IGF1RP08069 1367 aa12.14□□□□□ -0.47
HDAC1-204ENST00000471488 KIF27Q86VH2 1401 aa12.13□□□□□ -0.47
HDAC1-204ENST00000471488 PPRC1Q5VV67 1664 aaKnown RBP12.13□□□□□ -0.47
HDAC1-204ENST00000471488 COL17A1Q9UMD9 1497 aaPredicted RBP12.11□□□□□ -0.47
HDAC1-204ENST00000471488 CARMIL1Q5VZK9 1371 aa12.1□□□□□ -0.47
HDAC1-204ENST00000471488 GLI2P10070 1586 aa12.09□□□□□ -0.47
HDAC1-204ENST00000471488 TEX14Q8IWB6 1497 aa12.09□□□□□ -0.47
HDAC1-204ENST00000471488 UACAQ9BZF9 1416 aa12.09□□□□□ -0.47
HDAC1-204ENST00000471488 EPRSP07814 1512 aaKnown RBP12.08□□□□□ -0.48
HDAC1-204ENST00000471488 KCNH8Q96L42 1107 aa12.08□□□□□ -0.48
HDAC1-204ENST00000471488 IQGAP2Q13576 1575 aa12.07□□□□□ -0.48
HDAC1-204ENST00000471488 MAP3K4Q9Y6R4 1608 aa12.05□□□□□ -0.48
HDAC1-204ENST00000471488 ZCCHC11Q5TAX3 1644 aaKnown RBP12.04□□□□□ -0.48
HDAC1-204ENST00000471488 UHRF1BP1LA0JNW5 1464 aa12.04□□□□□ -0.48
HDAC1-204ENST00000471488 FBXO41Q8TF61 875 aa12.04□□□□□ -0.48
HDAC1-204ENST00000471488 ARID3CA6NKF2 412 aa12.02□□□□□ -0.49
HDAC1-204ENST00000471488 DISP1Q96F81 1524 aa12.01□□□□□ -0.49
HDAC1-204ENST00000471488 PLPPR3Q6T4P5 718 aa12□□□□□ -0.49
HDAC1-204ENST00000471488 KDM5BQ9UGL1 1544 aa12□□□□□ -0.49
HDAC1-204ENST00000471488 CD109Q6YHK3 1445 aa11.99□□□□□ -0.49
HDAC1-204ENST00000471488 WDR7Q9Y4E6 1490 aa11.99□□□□□ -0.49
HDAC1-204ENST00000471488 KIF21BO75037 1637 aa11.99□□□□□ -0.49
HDAC1-204ENST00000471488 ARID4BQ4LE39 1312 aaPredicted RBP11.97□□□□□ -0.49
HDAC1-204ENST00000471488 KIAA0556O60303 1618 aa11.96□□□□□ -0.5
HDAC1-204ENST00000471488 RAPGEF2Q9Y4G8 1499 aa11.93□□□□□ -0.5
HDAC1-204ENST00000471488 UGGT2Q9NYU1 1516 aa11.92□□□□□ -0.5
HDAC1-204ENST00000471488 CFAP43Q8NDM7 1665 aa11.92□□□□□ -0.5
HDAC1-204ENST00000471488 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.91□□□□□ -0.5
HDAC1-204ENST00000471488 HNRNPUL2Q1KMD3 747 aaKnown RBP11.91□□□□□ -0.5
HDAC1-204ENST00000471488 P3H3Q8IVL6 736 aa11.91□□□□□ -0.5
HDAC1-204ENST00000471488 FAM9AQ8IZU1 332 aaPredicted RBP11.91□□□□□ -0.5
HDAC1-204ENST00000471488 MAGI3Q5TCQ9 1506 aa11.91□□□□□ -0.5
HDAC1-204ENST00000471488 PTPRMP28827 1452 aa11.89□□□□□ -0.51
HDAC1-204ENST00000471488 RAPGEF3O95398 923 aa11.89□□□□□ -0.51
HDAC1-204ENST00000471488 LMTK3Q96Q04 1460 aa11.88□□□□□ -0.51
HDAC1-204ENST00000471488 HSPA2P54652 639 aa11.86□□□□□ -0.51
HDAC1-204ENST00000471488 GOLGA3Q08378 1498 aa11.86□□□□□ -0.51
HDAC1-204ENST00000471488 CTTNBP2Q8WZ74 1663 aa11.84□□□□□ -0.51
HDAC1-204ENST00000471488 RANGAP1P46060 587 aaPredicted RBP11.84□□□□□ -0.51
HDAC1-204ENST00000471488 ABCA8O94911 1581 aa11.84□□□□□ -0.51
HDAC1-204ENST00000471488 MADDQ8WXG6 1647 aa11.83□□□□□ -0.52
HDAC1-204ENST00000471488 PCF11O94913 1555 aaKnown RBP11.83□□□□□ -0.52
HDAC1-204ENST00000471488 ARAP3Q8WWN8 1544 aa11.82□□□□□ -0.52
HDAC1-204ENST00000471488 MLECQ14165 292 aa11.82□□□□□ -0.52
HDAC1-204ENST00000471488 ADAMTSL3P82987 1691 aa11.81□□□□□ -0.52
HDAC1-204ENST00000471488 RIMS1Q86UR5 1692 aaKnown RBP11.81□□□□□ -0.52
HDAC1-204ENST00000471488 DISP3Q9P2K9 1392 aa11.8□□□□□ -0.52
HDAC1-204ENST00000471488 BCORL1Q5H9F3 1711 aa11.79□□□□□ -0.52
HDAC1-204ENST00000471488 CERKQ8TCT0 537 aa11.78□□□□□ -0.52
HDAC1-204ENST00000471488 ATP10BO94823 1461 aa11.77□□□□□ -0.52
HDAC1-204ENST00000471488 PHLDB1Q86UU1 1377 aa11.76□□□□□ -0.53
HDAC1-204ENST00000471488 ABCA9Q8IUA7 1624 aa11.75□□□□□ -0.53
HDAC1-204ENST00000471488 ILDR2Q71H61 639 aa11.74□□□□□ -0.53
HDAC1-204ENST00000471488 NEO1Q92859 1461 aa11.74□□□□□ -0.53
HDAC1-204ENST00000471488 FRMPD1Q5SYB0 1578 aa11.72□□□□□ -0.53
HDAC1-204ENST00000471488 POGZQ7Z3K3 1410 aa11.72□□□□□ -0.53
HDAC1-204ENST00000471488 DENND4BO75064 1496 aaPredicted RBP11.71□□□□□ -0.53
HDAC1-204ENST00000471488 FANCAO15360 1455 aa11.7□□□□□ -0.54
HDAC1-204ENST00000471488 SOCS7O14512 581 aa11.7□□□□□ -0.54
HDAC1-204ENST00000471488 MYT1LQ9UL68 1186 aa11.7□□□□□ -0.54
HDAC1-204ENST00000471488 RAPGEF6Q8TEU7 1601 aa11.7□□□□□ -0.54
HDAC1-204ENST00000471488 ARHGEF40Q8TER5 1519 aa11.7□□□□□ -0.54
HDAC1-204ENST00000471488 PLEKHD1A6NEE1 506 aa11.69□□□□□ -0.54
HDAC1-204ENST00000471488 AKNAQ7Z591 1439 aa11.69□□□□□ -0.54
HDAC1-204ENST00000471488 CEBPAP49715 358 aaPredicted RBP11.67□□□□□ -0.54
HDAC1-204ENST00000471488 ATP1B4Q9UN42 357 aaPredicted RBP11.67□□□□□ -0.54
HDAC1-204ENST00000471488 YEATS2Q9ULM3 1422 aa11.67□□□□□ -0.54
HDAC1-204ENST00000471488 ZFYVE16Q7Z3T8 1539 aa11.66□□□□□ -0.54
HDAC1-204ENST00000471488 PRXQ9BXM0 1461 aa11.65□□□□□ -0.54
HDAC1-204ENST00000471488 FER1L4A9Z1Z3 1794 aa11.65□□□□□ -0.54
HDAC1-204ENST00000471488 RICTORQ6R327 1708 aa11.64□□□□□ -0.55
HDAC1-204ENST00000471488 FHOD3Q2V2M9 1422 aa11.64□□□□□ -0.55
HDAC1-204ENST00000471488 EHMT2Q96KQ7 1210 aa11.63□□□□□ -0.55
HDAC1-204ENST00000471488 EFCAB5A4FU69 1503 aa11.63□□□□□ -0.55
HDAC1-204ENST00000471488 NUP153P49790 1475 aaKnown RBP11.63□□□□□ -0.55
HDAC1-204ENST00000471488 CFAP74Q9C0B2 1584 aa11.62□□□□□ -0.55
HDAC1-204ENST00000471488 DMRT2Q9Y5R5 561 aa11.62□□□□□ -0.55
HDAC1-204ENST00000471488 SPATA31D1Q6ZQQ2 1576 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 64.2 ms