RNA–Protein interactions for RNA: ENST00000470241.2

SMC1A-206, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 3

Gene SMC1A, Length 838 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-206ENST00000470241 GOLGA3Q08378 1498 aa17.34■□□□□ 0.37
SMC1A-206ENST00000470241 EHMT2Q96KQ7 1210 aa17.33■□□□□ 0.36
SMC1A-206ENST00000470241 JPH4Q96JJ6 628 aa17.32■□□□□ 0.36
SMC1A-206ENST00000470241 SHROOM2Q13796 1616 aa17.29■□□□□ 0.36
SMC1A-206ENST00000470241 IQGAP2Q13576 1575 aa17.28■□□□□ 0.36
SMC1A-206ENST00000470241 UBTFP17480 764 aaKnown RBP17.27■□□□□ 0.36
SMC1A-206ENST00000470241 ARHGEF11O15085 1522 aa17.26■□□□□ 0.35
SMC1A-206ENST00000470241 PRG4Q92954 1404 aaPredicted RBP17.25■□□□□ 0.35
SMC1A-206ENST00000470241 CTTNBP2Q8WZ74 1663 aa17.24■□□□□ 0.35
SMC1A-206ENST00000470241 ERCC6L2Q5T890 1561 aa17.23■□□□□ 0.35
SMC1A-206ENST00000470241 UGGT2Q9NYU1 1516 aa17.23■□□□□ 0.35
SMC1A-206ENST00000470241 LOC105371045A0A1W2PR82 267 aa17.21■□□□□ 0.35
SMC1A-206ENST00000470241 RIMBP3CA6NJZ7 1639 aa17.21■□□□□ 0.35
SMC1A-206ENST00000470241 RIMBP3BA6NNM3 1639 aa17.21■□□□□ 0.35
SMC1A-206ENST00000470241 RIMBP3Q9UFD9 1639 aa17.21■□□□□ 0.35
SMC1A-206ENST00000470241 DISP1Q96F81 1524 aa17.19■□□□□ 0.34
SMC1A-206ENST00000470241 TNIKQ9UKE5 1360 aa17.18■□□□□ 0.34
SMC1A-206ENST00000470241 CARMIL2Q6F5E8 1435 aa17.16■□□□□ 0.34
SMC1A-206ENST00000470241 ARAP1Q96P48 1450 aa17.16■□□□□ 0.34
SMC1A-206ENST00000470241 RANGAP1P46060 587 aaPredicted RBP17.15■□□□□ 0.34
SMC1A-206ENST00000470241 KIAA0556O60303 1618 aa17.13■□□□□ 0.33
SMC1A-206ENST00000470241 CYB5RLQ6IPT4 315 aa17.11■□□□□ 0.33
SMC1A-206ENST00000470241 SAMD9Q5K651 1589 aa17.11■□□□□ 0.33
SMC1A-206ENST00000470241 P3H3Q8IVL6 736 aa17.1■□□□□ 0.33
SMC1A-206ENST00000470241 PTPRGP23470 1445 aa17.08■□□□□ 0.32
SMC1A-206ENST00000470241 EFCAB5A4FU69 1503 aa17.07■□□□□ 0.32
SMC1A-206ENST00000470241 ARHGAP35Q9NRY4 1499 aa17.07■□□□□ 0.32
SMC1A-206ENST00000470241 TTBK1Q5TCY1 1321 aaPredicted RBP17.06■□□□□ 0.32
SMC1A-206ENST00000470241 FHOD3Q2V2M9 1422 aa17.05■□□□□ 0.32
SMC1A-206ENST00000470241 CLIP1P30622 1438 aa17.04■□□□□ 0.32
SMC1A-206ENST00000470241 CEP162Q5TB80 1403 aa17.03■□□□□ 0.32
SMC1A-206ENST00000470241 UACAQ9BZF9 1416 aa16.97■□□□□ 0.31
SMC1A-206ENST00000470241 PLB1Q6P1J6 1458 aa16.97■□□□□ 0.31
SMC1A-206ENST00000470241 ABCA8O94911 1581 aa16.94■□□□□ 0.3
SMC1A-206ENST00000470241 UHRF1BP1LA0JNW5 1464 aa16.94■□□□□ 0.3
SMC1A-206ENST00000470241 ADCY10Q96PN6 1610 aa16.92■□□□□ 0.3
SMC1A-206ENST00000470241 ABCC2Q92887 1545 aa16.92■□□□□ 0.3
SMC1A-206ENST00000470241 FMN1Q68DA7 1419 aa16.92■□□□□ 0.3
SMC1A-206ENST00000470241 RAPGEF6Q8TEU7 1601 aa16.87■□□□□ 0.29
SMC1A-206ENST00000470241 KDM5BQ9UGL1 1544 aa16.86■□□□□ 0.29
SMC1A-206ENST00000470241 NUP153P49790 1475 aaKnown RBP16.86■□□□□ 0.29
SMC1A-206ENST00000470241 NPM1P06748 294 aaKnown RBP eCLIP16.85■□□□□ 0.29
SMC1A-206ENST00000470241 CASKIN1Q8WXD9 1431 aa16.84■□□□□ 0.29
SMC1A-206ENST00000470241 ARID3CA6NKF2 412 aa16.83■□□□□ 0.28
SMC1A-206ENST00000470241 ATP10BO94823 1461 aa16.82■□□□□ 0.28
SMC1A-206ENST00000470241 PCF11O94913 1555 aaKnown RBP16.81■□□□□ 0.28
SMC1A-206ENST00000470241 ATP1B4Q9UN42 357 aaPredicted RBP16.81■□□□□ 0.28
SMC1A-206ENST00000470241 VPS8Q8N3P4 1428 aa16.8■□□□□ 0.28
SMC1A-206ENST00000470241 FYCO1Q9BQS8 1478 aa16.79■□□□□ 0.28
SMC1A-206ENST00000470241 ZCCHC11Q5TAX3 1644 aaKnown RBP16.78■□□□□ 0.28
SMC1A-206ENST00000470241 HECW1Q76N89 1606 aa16.78■□□□□ 0.28
SMC1A-206ENST00000470241 MAPKBP1O60336 1514 aa16.77■□□□□ 0.28
SMC1A-206ENST00000470241 EPRSP07814 1512 aaKnown RBP16.77■□□□□ 0.28
SMC1A-206ENST00000470241 ASXL2Q76L83 1435 aa16.76■□□□□ 0.27
SMC1A-206ENST00000470241 CDK13Q14004 1512 aaKnown RBP16.75■□□□□ 0.27
SMC1A-206ENST00000470241 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.74■□□□□ 0.27
SMC1A-206ENST00000470241 HNRNPUL2Q1KMD3 747 aaKnown RBP16.74■□□□□ 0.27
SMC1A-206ENST00000470241 CCDC18Q5T9S5 1454 aa16.72■□□□□ 0.27
SMC1A-206ENST00000470241 WDR7Q9Y4E6 1490 aa16.71■□□□□ 0.27
SMC1A-206ENST00000470241 LRRIQ1Q96JM4 1722 aa16.7■□□□□ 0.26
SMC1A-206ENST00000470241 ABCC10Q5T3U5 1492 aa16.68■□□□□ 0.26
SMC1A-206ENST00000470241 PLEKHD1A6NEE1 506 aa16.68■□□□□ 0.26
SMC1A-206ENST00000470241 CDK11AQ9UQ88 783 aaPredicted RBP16.66■□□□□ 0.26
SMC1A-206ENST00000470241 KCNH8Q96L42 1107 aa16.65■□□□□ 0.26
SMC1A-206ENST00000470241 DIP2BQ9P265 1576 aa16.64■□□□□ 0.25
SMC1A-206ENST00000470241 TRHP20396 242 aaPredicted RBP16.64■□□□□ 0.25
SMC1A-206ENST00000470241 FAM69CQ0P6D2 419 aa16.64■□□□□ 0.25
SMC1A-206ENST00000470241 MAGI3Q5TCQ9 1506 aa16.64■□□□□ 0.25
SMC1A-206ENST00000470241 TROQ12816 1431 aaPredicted RBP16.63■□□□□ 0.25
SMC1A-206ENST00000470241 TIAM1Q13009 1591 aa16.62■□□□□ 0.25
SMC1A-206ENST00000470241 MAP3K1Q13233 1512 aa16.61■□□□□ 0.25
SMC1A-206ENST00000470241 GLI2P10070 1586 aa16.61■□□□□ 0.25
SMC1A-206ENST00000470241 CFAP43Q8NDM7 1665 aa16.59■□□□□ 0.25
SMC1A-206ENST00000470241 APLP2Q06481 763 aa16.58■□□□□ 0.24
SMC1A-206ENST00000470241 KANK4Q5T7N3 995 aaPredicted RBP16.58■□□□□ 0.24
SMC1A-206ENST00000470241 MTUS2Q5JR59 1369 aa16.58■□□□□ 0.24
SMC1A-206ENST00000470241 KIF13AQ9H1H9 1805 aa16.56■□□□□ 0.24
SMC1A-206ENST00000470241 LRRC9Q6ZRR7 1453 aa16.56■□□□□ 0.24
SMC1A-206ENST00000470241 KIF14Q15058 1648 aa16.55■□□□□ 0.24
SMC1A-206ENST00000470241 EHBP1L1Q8N3D4 1523 aa16.55■□□□□ 0.24
SMC1A-206ENST00000470241 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.55■□□□□ 0.24
SMC1A-206ENST00000470241 ABCA9Q8IUA7 1624 aa16.54■□□□□ 0.24
SMC1A-206ENST00000470241 CD109Q6YHK3 1445 aa16.53■□□□□ 0.24
SMC1A-206ENST00000470241 MAP3K4Q9Y6R4 1608 aa16.52■□□□□ 0.24
SMC1A-206ENST00000470241 TTC37Q6PGP7 1564 aa16.51■□□□□ 0.23
SMC1A-206ENST00000470241 NCOA2Q15596 1464 aa16.48■□□□□ 0.23
SMC1A-206ENST00000470241 PLCH2O75038 1416 aa16.47■□□□□ 0.23
SMC1A-206ENST00000470241 PPRC1Q5VV67 1664 aaKnown RBP16.46■□□□□ 0.23
SMC1A-206ENST00000470241 GPATCH8Q9UKJ3 1502 aaKnown RBP16.45■□□□□ 0.22
SMC1A-206ENST00000470241 CCNB3Q8WWL7 1395 aa16.44■□□□□ 0.22
SMC1A-206ENST00000470241 SUPT6HQ7KZ85 1726 aaKnown RBP16.44■□□□□ 0.22
SMC1A-206ENST00000470241 TEX14Q8IWB6 1497 aa16.43■□□□□ 0.22
SMC1A-206ENST00000470241 PPARGC1BQ86YN6 1023 aaKnown RBP16.43■□□□□ 0.22
SMC1A-206ENST00000470241 ARAP3Q8WWN8 1544 aa16.42■□□□□ 0.22
SMC1A-206ENST00000470241 TSPOAP1O95153 1857 aa16.42■□□□□ 0.22
SMC1A-206ENST00000470241 EFCAB2Q5VUJ9 269 aa16.4■□□□□ 0.22
SMC1A-206ENST00000470241 FANCAO15360 1455 aa16.4■□□□□ 0.22
SMC1A-206ENST00000470241 NEO1Q92859 1461 aa16.4■□□□□ 0.22
SMC1A-206ENST00000470241 PHLDB1Q86UU1 1377 aa16.39■□□□□ 0.21
SMC1A-206ENST00000470241 MYO5CQ9NQX4 1742 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms