RNA–Protein interactions for RNA: ENST00000469778.1

SPTLC1-204, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

TSL 2

Gene SPTLC1, Length 490 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-204ENST00000469778 KIF21BO75037 1637 aa20.7■□□□□ 0.9
SPTLC1-204ENST00000469778 GOLGA3Q08378 1498 aa20.63■□□□□ 0.89
SPTLC1-204ENST00000469778 SHROOM2Q13796 1616 aa20.63■□□□□ 0.89
SPTLC1-204ENST00000469778 IQGAP2Q13576 1575 aa20.61■□□□□ 0.89
SPTLC1-204ENST00000469778 ARHGEF11O15085 1522 aa20.6■□□□□ 0.89
SPTLC1-204ENST00000469778 UBTFP17480 764 aaKnown RBP20.6■□□□□ 0.89
SPTLC1-204ENST00000469778 PRG4Q92954 1404 aaPredicted RBP20.59■□□□□ 0.89
SPTLC1-204ENST00000469778 CARMIL2Q6F5E8 1435 aa20.58■□□□□ 0.88
SPTLC1-204ENST00000469778 UGGT2Q9NYU1 1516 aa20.55■□□□□ 0.88
SPTLC1-204ENST00000469778 CTTNBP2Q8WZ74 1663 aa20.54■□□□□ 0.88
SPTLC1-204ENST00000469778 RIMBP3CA6NJZ7 1639 aa20.53■□□□□ 0.88
SPTLC1-204ENST00000469778 RIMBP3BA6NNM3 1639 aa20.53■□□□□ 0.88
SPTLC1-204ENST00000469778 RIMBP3Q9UFD9 1639 aa20.53■□□□□ 0.88
SPTLC1-204ENST00000469778 TNIKQ9UKE5 1360 aa20.46■□□□□ 0.87
SPTLC1-204ENST00000469778 CYB5RLQ6IPT4 315 aa20.46■□□□□ 0.87
SPTLC1-204ENST00000469778 DISP1Q96F81 1524 aa20.44■□□□□ 0.86
SPTLC1-204ENST00000469778 ARAP1Q96P48 1450 aa20.43■□□□□ 0.86
SPTLC1-204ENST00000469778 PTPRGP23470 1445 aa20.43■□□□□ 0.86
SPTLC1-204ENST00000469778 ERCC6L2Q5T890 1561 aa20.42■□□□□ 0.86
SPTLC1-204ENST00000469778 EHMT2Q96KQ7 1210 aa20.41■□□□□ 0.86
SPTLC1-204ENST00000469778 EFCAB5A4FU69 1503 aa20.39■□□□□ 0.85
SPTLC1-204ENST00000469778 KIAA0556O60303 1618 aa20.38■□□□□ 0.85
SPTLC1-204ENST00000469778 SAMD9Q5K651 1589 aa20.35■□□□□ 0.85
SPTLC1-204ENST00000469778 LOC105371045A0A1W2PR82 267 aa20.33■□□□□ 0.85
SPTLC1-204ENST00000469778 RANGAP1P46060 587 aaPredicted RBP20.31■□□□□ 0.84
SPTLC1-204ENST00000469778 NPM1P06748 294 aaKnown RBP eCLIP20.29■□□□□ 0.84
SPTLC1-204ENST00000469778 P3H3Q8IVL6 736 aa20.29■□□□□ 0.84
SPTLC1-204ENST00000469778 UACAQ9BZF9 1416 aa20.28■□□□□ 0.84
SPTLC1-204ENST00000469778 UHRF1BP1LA0JNW5 1464 aa20.27■□□□□ 0.84
SPTLC1-204ENST00000469778 CLIP1P30622 1438 aa20.27■□□□□ 0.83
SPTLC1-204ENST00000469778 ARHGAP35Q9NRY4 1499 aa20.25■□□□□ 0.83
SPTLC1-204ENST00000469778 FMN1Q68DA7 1419 aa20.25■□□□□ 0.83
SPTLC1-204ENST00000469778 TTBK1Q5TCY1 1321 aaPredicted RBP20.25■□□□□ 0.83
SPTLC1-204ENST00000469778 FHOD3Q2V2M9 1422 aa20.21■□□□□ 0.83
SPTLC1-204ENST00000469778 CEP162Q5TB80 1403 aa20.2■□□□□ 0.82
SPTLC1-204ENST00000469778 ABCC2Q92887 1545 aa20.19■□□□□ 0.82
SPTLC1-204ENST00000469778 ABCA8O94911 1581 aa20.17■□□□□ 0.82
SPTLC1-204ENST00000469778 PLB1Q6P1J6 1458 aa20.17■□□□□ 0.82
SPTLC1-204ENST00000469778 ADCY10Q96PN6 1610 aa20.15■□□□□ 0.82
SPTLC1-204ENST00000469778 KDM5BQ9UGL1 1544 aa20.14■□□□□ 0.81
SPTLC1-204ENST00000469778 RAPGEF6Q8TEU7 1601 aa20.09■□□□□ 0.81
SPTLC1-204ENST00000469778 MAPKBP1O60336 1514 aa20.08■□□□□ 0.81
SPTLC1-204ENST00000469778 CASKIN1Q8WXD9 1431 aa20.07■□□□□ 0.8
SPTLC1-204ENST00000469778 ATP10BO94823 1461 aa20.05■□□□□ 0.8
SPTLC1-204ENST00000469778 NUP153P49790 1475 aaKnown RBP20.05■□□□□ 0.8
SPTLC1-204ENST00000469778 CDK11AQ9UQ88 783 aaPredicted RBP20.04■□□□□ 0.8
SPTLC1-204ENST00000469778 FYCO1Q9BQS8 1478 aa20.01■□□□□ 0.79
SPTLC1-204ENST00000469778 PLEKHD1A6NEE1 506 aa20.01■□□□□ 0.79
SPTLC1-204ENST00000469778 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.01■□□□□ 0.79
SPTLC1-204ENST00000469778 HNRNPUL2Q1KMD3 747 aaKnown RBP20.01■□□□□ 0.79
SPTLC1-204ENST00000469778 ATP1B4Q9UN42 357 aaPredicted RBP20.01■□□□□ 0.79
SPTLC1-204ENST00000469778 HECW1Q76N89 1606 aa20.01■□□□□ 0.79
SPTLC1-204ENST00000469778 ASXL2Q76L83 1435 aa20■□□□□ 0.79
SPTLC1-204ENST00000469778 ZCCHC11Q5TAX3 1644 aaKnown RBP19.98■□□□□ 0.79
SPTLC1-204ENST00000469778 VPS8Q8N3P4 1428 aa19.98■□□□□ 0.79
SPTLC1-204ENST00000469778 CCDC18Q5T9S5 1454 aa19.98■□□□□ 0.79
SPTLC1-204ENST00000469778 EPRSP07814 1512 aaKnown RBP19.97■□□□□ 0.79
SPTLC1-204ENST00000469778 TRHP20396 242 aaPredicted RBP19.96■□□□□ 0.79
SPTLC1-204ENST00000469778 ABCC10Q5T3U5 1492 aa19.95■□□□□ 0.78
SPTLC1-204ENST00000469778 WDR7Q9Y4E6 1490 aa19.95■□□□□ 0.78
SPTLC1-204ENST00000469778 ARID3CA6NKF2 412 aa19.93■□□□□ 0.78
SPTLC1-204ENST00000469778 FAM69CQ0P6D2 419 aa19.92■□□□□ 0.78
SPTLC1-204ENST00000469778 PCF11O94913 1555 aaKnown RBP19.91■□□□□ 0.78
SPTLC1-204ENST00000469778 GLI2P10070 1586 aa19.88■□□□□ 0.77
SPTLC1-204ENST00000469778 APLP2Q06481 763 aa19.87■□□□□ 0.77
SPTLC1-204ENST00000469778 KCNH8Q96L42 1107 aa19.87■□□□□ 0.77
SPTLC1-204ENST00000469778 MAP3K1Q13233 1512 aa19.86■□□□□ 0.77
SPTLC1-204ENST00000469778 CDK13Q14004 1512 aaKnown RBP19.85■□□□□ 0.77
SPTLC1-204ENST00000469778 TROQ12816 1431 aaPredicted RBP19.84■□□□□ 0.77
SPTLC1-204ENST00000469778 DIP2BQ9P265 1576 aa19.83■□□□□ 0.77
SPTLC1-204ENST00000469778 MTUS2Q5JR59 1369 aa19.79■□□□□ 0.76
SPTLC1-204ENST00000469778 CD109Q6YHK3 1445 aa19.76■□□□□ 0.75
SPTLC1-204ENST00000469778 LRRIQ1Q96JM4 1722 aa19.76■□□□□ 0.75
SPTLC1-204ENST00000469778 KIF13AQ9H1H9 1805 aa19.76■□□□□ 0.75
SPTLC1-204ENST00000469778 ABCA9Q8IUA7 1624 aa19.74■□□□□ 0.75
SPTLC1-204ENST00000469778 TIAM1Q13009 1591 aa19.74■□□□□ 0.75
SPTLC1-204ENST00000469778 TEX14Q8IWB6 1497 aa19.73■□□□□ 0.75
SPTLC1-204ENST00000469778 PHLDB1Q86UU1 1377 aa19.73■□□□□ 0.75
SPTLC1-204ENST00000469778 MAGI3Q5TCQ9 1506 aa19.73■□□□□ 0.75
SPTLC1-204ENST00000469778 CFAP43Q8NDM7 1665 aa19.73■□□□□ 0.75
SPTLC1-204ENST00000469778 MAP3K4Q9Y6R4 1608 aa19.73■□□□□ 0.75
SPTLC1-204ENST00000469778 KIF14Q15058 1648 aa19.72■□□□□ 0.75
SPTLC1-204ENST00000469778 EHBP1L1Q8N3D4 1523 aa19.71■□□□□ 0.75
SPTLC1-204ENST00000469778 LRRC9Q6ZRR7 1453 aa19.7■□□□□ 0.74
SPTLC1-204ENST00000469778 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.69■□□□□ 0.74
SPTLC1-204ENST00000469778 PLCH2O75038 1416 aa19.68■□□□□ 0.74
SPTLC1-204ENST00000469778 ARAP3Q8WWN8 1544 aa19.66■□□□□ 0.74
SPTLC1-204ENST00000469778 EFCAB2Q5VUJ9 269 aa19.66■□□□□ 0.74
SPTLC1-204ENST00000469778 KANK4Q5T7N3 995 aaPredicted RBP19.64■□□□□ 0.73
SPTLC1-204ENST00000469778 NEO1Q92859 1461 aa19.64■□□□□ 0.73
SPTLC1-204ENST00000469778 CCNB3Q8WWL7 1395 aa19.63■□□□□ 0.73
SPTLC1-204ENST00000469778 TTC37Q6PGP7 1564 aa19.6■□□□□ 0.73
SPTLC1-204ENST00000469778 SUPT6HQ7KZ85 1726 aaKnown RBP19.59■□□□□ 0.73
SPTLC1-204ENST00000469778 FANCAO15360 1455 aa19.59■□□□□ 0.73
SPTLC1-204ENST00000469778 NCOA2Q15596 1464 aa19.59■□□□□ 0.73
SPTLC1-204ENST00000469778 GPATCH8Q9UKJ3 1502 aaKnown RBP19.58■□□□□ 0.73
SPTLC1-204ENST00000469778 CFDP1Q9UEE9 299 aaPredicted RBP19.58■□□□□ 0.72
SPTLC1-204ENST00000469778 PPRC1Q5VV67 1664 aaKnown RBP19.58■□□□□ 0.72
SPTLC1-204ENST00000469778 TSPOAP1O95153 1857 aa19.58■□□□□ 0.72
SPTLC1-204ENST00000469778 CFAP74Q9C0B2 1584 aa19.57■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 91.1 ms