RNA–Protein interactions for RNA: ENST00000468949.1

HDAC6-216, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-216ENST00000468949 PIAS4Q8N2W9 510 aaPredicted RBP13.41□□□□□ -0.26
HDAC6-216ENST00000468949 CEP170Q5SW79 1584 aa13.4□□□□□ -0.26
HDAC6-216ENST00000468949 FAM9AQ8IZU1 332 aaPredicted RBP13.39□□□□□ -0.27
HDAC6-216ENST00000468949 NUP160Q12769 1436 aa13.39□□□□□ -0.27
HDAC6-216ENST00000468949 ARAP1Q96P48 1450 aa13.37□□□□□ -0.27
HDAC6-216ENST00000468949 RUSC2Q8N2Y8 1516 aa13.35□□□□□ -0.27
HDAC6-216ENST00000468949 SHROOM2Q13796 1616 aa13.35□□□□□ -0.27
HDAC6-216ENST00000468949 CSRNP3Q8WYN3 585 aa13.31□□□□□ -0.28
HDAC6-216ENST00000468949 IGF1RP08069 1367 aa13.28□□□□□ -0.28
HDAC6-216ENST00000468949 CARMIL1Q5VZK9 1371 aa13.27□□□□□ -0.29
HDAC6-216ENST00000468949 ERCC6L2Q5T890 1561 aa13.25□□□□□ -0.29
HDAC6-216ENST00000468949 RAPGEF2Q9Y4G8 1499 aa13.23□□□□□ -0.29
HDAC6-216ENST00000468949 CYB5RLQ6IPT4 315 aa13.23□□□□□ -0.29
HDAC6-216ENST00000468949 KIF21BO75037 1637 aa13.23□□□□□ -0.29
HDAC6-216ENST00000468949 EHMT2Q96KQ7 1210 aa13.22□□□□□ -0.29
HDAC6-216ENST00000468949 KIAA0586Q9BVV6 1533 aa13.22□□□□□ -0.29
HDAC6-216ENST00000468949 GOLGA3Q08378 1498 aa13.22□□□□□ -0.29
HDAC6-216ENST00000468949 PRXQ9BXM0 1461 aa13.22□□□□□ -0.29
HDAC6-216ENST00000468949 PRG4Q92954 1404 aaPredicted RBP13.19□□□□□ -0.3
HDAC6-216ENST00000468949 IQGAP2Q13576 1575 aa13.19□□□□□ -0.3
HDAC6-216ENST00000468949 UBTFP17480 764 aaKnown RBP13.17□□□□□ -0.3
HDAC6-216ENST00000468949 CTTNBP2Q8WZ74 1663 aa13.16□□□□□ -0.3
HDAC6-216ENST00000468949 JPH4Q96JJ6 628 aa13.12□□□□□ -0.31
HDAC6-216ENST00000468949 UGGT2Q9NYU1 1516 aa13.08□□□□□ -0.31
HDAC6-216ENST00000468949 CARMIL2Q6F5E8 1435 aa13.08□□□□□ -0.32
HDAC6-216ENST00000468949 ADCY10Q96PN6 1610 aa13.07□□□□□ -0.32
HDAC6-216ENST00000468949 KIAA0556O60303 1618 aa13.06□□□□□ -0.32
HDAC6-216ENST00000468949 LOC105371045A0A1W2PR82 267 aa13.06□□□□□ -0.32
HDAC6-216ENST00000468949 TNIKQ9UKE5 1360 aa13.06□□□□□ -0.32
HDAC6-216ENST00000468949 DISP1Q96F81 1524 aa13.04□□□□□ -0.32
HDAC6-216ENST00000468949 RANGAP1P46060 587 aaPredicted RBP13.04□□□□□ -0.32
HDAC6-216ENST00000468949 MAPKBP1O60336 1514 aa13.03□□□□□ -0.32
HDAC6-216ENST00000468949 TRHP20396 242 aaPredicted RBP13.02□□□□□ -0.33
HDAC6-216ENST00000468949 PTPRGP23470 1445 aa13□□□□□ -0.33
HDAC6-216ENST00000468949 CEP162Q5TB80 1403 aa12.98□□□□□ -0.33
HDAC6-216ENST00000468949 KIF13AQ9H1H9 1805 aa12.98□□□□□ -0.33
HDAC6-216ENST00000468949 ABCC2Q92887 1545 aa12.98□□□□□ -0.33
HDAC6-216ENST00000468949 CLIP1P30622 1438 aa12.97□□□□□ -0.33
HDAC6-216ENST00000468949 EFCAB5A4FU69 1503 aa12.97□□□□□ -0.33
HDAC6-216ENST00000468949 UHRF1BP1LA0JNW5 1464 aa12.97□□□□□ -0.33
HDAC6-216ENST00000468949 DIP2BQ9P265 1576 aa12.96□□□□□ -0.33
HDAC6-216ENST00000468949 KCNA4P22459 653 aa12.95□□□□□ -0.34
HDAC6-216ENST00000468949 SAMD9Q5K651 1589 aa12.94□□□□□ -0.34
HDAC6-216ENST00000468949 UACAQ9BZF9 1416 aa12.94□□□□□ -0.34
HDAC6-216ENST00000468949 PPP4R3CPQ6ZMV5 832 aa12.93□□□□□ -0.34
HDAC6-216ENST00000468949 ABCC10Q5T3U5 1492 aa12.92□□□□□ -0.34
HDAC6-216ENST00000468949 NPM1P06748 294 aaKnown RBP eCLIP12.92□□□□□ -0.34
HDAC6-216ENST00000468949 P3H3Q8IVL6 736 aa12.91□□□□□ -0.34
HDAC6-216ENST00000468949 ZCCHC11Q5TAX3 1644 aaKnown RBP12.91□□□□□ -0.34
HDAC6-216ENST00000468949 ABCA8O94911 1581 aa12.9□□□□□ -0.34
HDAC6-216ENST00000468949 KDM5BQ9UGL1 1544 aa12.9□□□□□ -0.34
HDAC6-216ENST00000468949 ARHGAP35Q9NRY4 1499 aa12.9□□□□□ -0.34
HDAC6-216ENST00000468949 TTBK1Q5TCY1 1321 aaPredicted RBP12.89□□□□□ -0.35
HDAC6-216ENST00000468949 FHOD3Q2V2M9 1422 aa12.89□□□□□ -0.35
HDAC6-216ENST00000468949 MSH5O43196 834 aa12.88□□□□□ -0.35
HDAC6-216ENST00000468949 PLB1Q6P1J6 1458 aa12.88□□□□□ -0.35
HDAC6-216ENST00000468949 FMN1Q68DA7 1419 aa12.86□□□□□ -0.35
HDAC6-216ENST00000468949 ASXL2Q76L83 1435 aa12.86□□□□□ -0.35
HDAC6-216ENST00000468949 GLI2P10070 1586 aa12.84□□□□□ -0.35
HDAC6-216ENST00000468949 RAPGEF6Q8TEU7 1601 aa12.84□□□□□ -0.35
HDAC6-216ENST00000468949 WDR7Q9Y4E6 1490 aa12.82□□□□□ -0.36
HDAC6-216ENST00000468949 MAP3K4Q9Y6R4 1608 aa12.8□□□□□ -0.36
HDAC6-216ENST00000468949 VPS8Q8N3P4 1428 aa12.8□□□□□ -0.36
HDAC6-216ENST00000468949 FAM69CQ0P6D2 419 aa12.8□□□□□ -0.36
HDAC6-216ENST00000468949 ATP1B4Q9UN42 357 aaPredicted RBP12.8□□□□□ -0.36
HDAC6-216ENST00000468949 EPRSP07814 1512 aaKnown RBP12.79□□□□□ -0.36
HDAC6-216ENST00000468949 TSPOAP1O95153 1857 aa12.79□□□□□ -0.36
HDAC6-216ENST00000468949 PPRC1Q5VV67 1664 aaKnown RBP12.79□□□□□ -0.36
HDAC6-216ENST00000468949 KDM6BO15054 1643 aa12.78□□□□□ -0.36
HDAC6-216ENST00000468949 HECW1Q76N89 1606 aa12.77□□□□□ -0.36
HDAC6-216ENST00000468949 FYCO1Q9BQS8 1478 aa12.77□□□□□ -0.37
HDAC6-216ENST00000468949 PCF11O94913 1555 aaKnown RBP12.77□□□□□ -0.37
HDAC6-216ENST00000468949 CFAP43Q8NDM7 1665 aa12.77□□□□□ -0.37
HDAC6-216ENST00000468949 APLP2Q06481 763 aa12.76□□□□□ -0.37
HDAC6-216ENST00000468949 NUP153P49790 1475 aaKnown RBP12.74□□□□□ -0.37
HDAC6-216ENST00000468949 TEX14Q8IWB6 1497 aa12.74□□□□□ -0.37
HDAC6-216ENST00000468949 CASKIN1Q8WXD9 1431 aa12.74□□□□□ -0.37
HDAC6-216ENST00000468949 ATP10BO94823 1461 aa12.72□□□□□ -0.37
HDAC6-216ENST00000468949 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.72□□□□□ -0.37
HDAC6-216ENST00000468949 HNRNPUL2Q1KMD3 747 aaKnown RBP12.72□□□□□ -0.37
HDAC6-216ENST00000468949 CCDC18Q5T9S5 1454 aa12.72□□□□□ -0.37
HDAC6-216ENST00000468949 ABCA9Q8IUA7 1624 aa12.7□□□□□ -0.38
HDAC6-216ENST00000468949 ARID3CA6NKF2 412 aa12.7□□□□□ -0.38
HDAC6-216ENST00000468949 MAGI3Q5TCQ9 1506 aa12.67□□□□□ -0.38
HDAC6-216ENST00000468949 CDK11AQ9UQ88 783 aaPredicted RBP12.66□□□□□ -0.38
HDAC6-216ENST00000468949 CD109Q6YHK3 1445 aa12.65□□□□□ -0.38
HDAC6-216ENST00000468949 CDK13Q14004 1512 aaKnown RBP12.65□□□□□ -0.38
HDAC6-216ENST00000468949 TIAM1Q13009 1591 aa12.64□□□□□ -0.39
HDAC6-216ENST00000468949 MTUS2Q5JR59 1369 aa12.63□□□□□ -0.39
HDAC6-216ENST00000468949 CFAP74Q9C0B2 1584 aa12.62□□□□□ -0.39
HDAC6-216ENST00000468949 NCBP3Q53F19 620 aaKnown RBP12.62□□□□□ -0.39
HDAC6-216ENST00000468949 MAP3K1Q13233 1512 aa12.62□□□□□ -0.39
HDAC6-216ENST00000468949 TTC37Q6PGP7 1564 aa12.61□□□□□ -0.39
HDAC6-216ENST00000468949 LRRIQ1Q96JM4 1722 aa12.61□□□□□ -0.39
HDAC6-216ENST00000468949 KIF14Q15058 1648 aa12.6□□□□□ -0.39
HDAC6-216ENST00000468949 PLEKHD1A6NEE1 506 aa12.6□□□□□ -0.39
HDAC6-216ENST00000468949 KCNH8Q96L42 1107 aa12.6□□□□□ -0.39
HDAC6-216ENST00000468949 EHBP1L1Q8N3D4 1523 aa12.6□□□□□ -0.39
HDAC6-216ENST00000468949 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.58□□□□□ -0.4
HDAC6-216ENST00000468949 NEO1Q92859 1461 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 156.8 ms