RNA–Protein interactions for RNA: ENST00000465591.1

LIME1-203, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 680 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-203ENST00000465591 PRG4Q92954 1404 aaPredicted RBP37.43■■■■□ 3.58
LIME1-203ENST00000465591 CARMIL1Q5VZK9 1371 aa37.42■■■■□ 3.58
LIME1-203ENST00000465591 KIAA0586Q9BVV6 1533 aa37.36■■■■□ 3.57
LIME1-203ENST00000465591 TRHP20396 242 aaPredicted RBP37.32■■■■□ 3.56
LIME1-203ENST00000465591 RAPGEF2Q9Y4G8 1499 aa37.14■■■■□ 3.54
LIME1-203ENST00000465591 IQGAP2Q13576 1575 aa37.09■■■■□ 3.53
LIME1-203ENST00000465591 ADCY10Q96PN6 1610 aa36.99■■■■□ 3.51
LIME1-203ENST00000465591 PRXQ9BXM0 1461 aa36.94■■■■□ 3.5
LIME1-203ENST00000465591 DISP1Q96F81 1524 aa36.91■■■■□ 3.5
LIME1-203ENST00000465591 CARMIL2Q6F5E8 1435 aa36.91■■■■□ 3.5
LIME1-203ENST00000465591 PTPRGP23470 1445 aa36.89■■■■□ 3.5
LIME1-203ENST00000465591 UGGT2Q9NYU1 1516 aa36.89■■■■□ 3.5
LIME1-203ENST00000465591 CTTNBP2Q8WZ74 1663 aa36.87■■■■□ 3.49
LIME1-203ENST00000465591 TNIKQ9UKE5 1360 aa36.87■■■■□ 3.49
LIME1-203ENST00000465591 TTBK1Q5TCY1 1321 aaPredicted RBP36.85■■■■□ 3.49
LIME1-203ENST00000465591 KIF13AQ9H1H9 1805 aa36.84■■■■□ 3.49
LIME1-203ENST00000465591 MAPKBP1O60336 1514 aa36.78■■■■□ 3.48
LIME1-203ENST00000465591 KIAA0556O60303 1618 aa36.77■■■■□ 3.48
LIME1-203ENST00000465591 NPM1P06748 294 aaKnown RBP eCLIP36.77■■■■□ 3.48
LIME1-203ENST00000465591 CSRNP3Q8WYN3 585 aa36.74■■■■□ 3.47
LIME1-203ENST00000465591 ABCC10Q5T3U5 1492 aa36.68■■■■□ 3.46
LIME1-203ENST00000465591 EEA1Q15075 1411 aa36.65■■■■□ 3.46
LIME1-203ENST00000465591 ABCC2Q92887 1545 aa36.64■■■■□ 3.46
LIME1-203ENST00000465591 UACAQ9BZF9 1416 aa36.64■■■■□ 3.46
LIME1-203ENST00000465591 DIP2BQ9P265 1576 aa36.64■■■■□ 3.46
LIME1-203ENST00000465591 UHRF1BP1LA0JNW5 1464 aa36.63■■■■□ 3.45
LIME1-203ENST00000465591 FAM69CQ0P6D2 419 aa36.6■■■■□ 3.45
LIME1-203ENST00000465591 CHIC1Q5VXU3 224 aa36.6■■■■□ 3.45
LIME1-203ENST00000465591 FAM9AQ8IZU1 332 aaPredicted RBP36.58■■■■□ 3.45
LIME1-203ENST00000465591 GOLGA3Q08378 1498 aa36.56■■■■□ 3.44
LIME1-203ENST00000465591 KDM5BQ9UGL1 1544 aa36.49■■■■□ 3.43
LIME1-203ENST00000465591 ASXL2Q76L83 1435 aa36.48■■■■□ 3.43
LIME1-203ENST00000465591 PLB1Q6P1J6 1458 aa36.48■■■■□ 3.43
LIME1-203ENST00000465591 ZCCHC11Q5TAX3 1644 aaKnown RBP36.45■■■■□ 3.42
LIME1-203ENST00000465591 ABCA8O94911 1581 aa36.41■■■■□ 3.42
LIME1-203ENST00000465591 TSPOAP1O95153 1857 aa36.4■■■■□ 3.42
LIME1-203ENST00000465591 KIF21BO75037 1637 aa36.4■■■■□ 3.42
LIME1-203ENST00000465591 SAMD9Q5K651 1589 aa36.38■■■■□ 3.41
LIME1-203ENST00000465591 P3H3Q8IVL6 736 aa36.37■■■■□ 3.41
LIME1-203ENST00000465591 GLI2P10070 1586 aa36.31■■■■□ 3.4
LIME1-203ENST00000465591 EPRSP07814 1512 aaKnown RBP36.26■■■■□ 3.4
LIME1-203ENST00000465591 PPRC1Q5VV67 1664 aaKnown RBP36.24■■■■□ 3.39
LIME1-203ENST00000465591 RANGAP1P46060 587 aaPredicted RBP36.24■■■■□ 3.39
LIME1-203ENST00000465591 WDR7Q9Y4E6 1490 aa36.19■■■■□ 3.38
LIME1-203ENST00000465591 EHMT2Q96KQ7 1210 aa36.18■■■■□ 3.38
LIME1-203ENST00000465591 MAP3K4Q9Y6R4 1608 aa36.16■■■■□ 3.38
LIME1-203ENST00000465591 FHOD3Q2V2M9 1422 aa36.15■■■■□ 3.38
LIME1-203ENST00000465591 KDM6BO15054 1643 aa36.15■■■■□ 3.38
LIME1-203ENST00000465591 ARID3CA6NKF2 412 aa36.12■■■■□ 3.37
LIME1-203ENST00000465591 RAPGEF6Q8TEU7 1601 aa36.11■■■■□ 3.37
LIME1-203ENST00000465591 ATP10BO94823 1461 aa36.1■■■■□ 3.37
LIME1-203ENST00000465591 EFCAB5A4FU69 1503 aa36.06■■■■□ 3.36
LIME1-203ENST00000465591 UBTFP17480 764 aaKnown RBP36.04■■■■□ 3.36
LIME1-203ENST00000465591 KCNH8Q96L42 1107 aa36.02■■■■□ 3.36
LIME1-203ENST00000465591 NUP153P49790 1475 aaKnown RBP35.99■■■■□ 3.35
LIME1-203ENST00000465591 CFAP43Q8NDM7 1665 aa35.96■■■■□ 3.35
LIME1-203ENST00000465591 COL17A1Q9UMD9 1497 aaPredicted RBP35.94■■■■□ 3.34
LIME1-203ENST00000465591 TEX14Q8IWB6 1497 aa35.92■■■■□ 3.34
LIME1-203ENST00000465591 CD109Q6YHK3 1445 aa35.91■■■■□ 3.34
LIME1-203ENST00000465591 ARHGAP35Q9NRY4 1499 aa35.88■■■■□ 3.33
LIME1-203ENST00000465591 MAGI3Q5TCQ9 1506 aa35.87■■■■□ 3.33
LIME1-203ENST00000465591 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP35.83■■■■□ 3.33
LIME1-203ENST00000465591 HNRNPUL2Q1KMD3 747 aaKnown RBP35.83■■■■□ 3.33
LIME1-203ENST00000465591 ABCA9Q8IUA7 1624 aa35.79■■■■□ 3.32
LIME1-203ENST00000465591 AEBP2Q6ZN18 517 aaPredicted RBP35.75■■■■□ 3.31
LIME1-203ENST00000465591 CDK13Q14004 1512 aaKnown RBP35.72■■■■□ 3.31
LIME1-203ENST00000465591 FMN1Q68DA7 1419 aa35.7■■■■□ 3.31
LIME1-203ENST00000465591 PLEKHD1A6NEE1 506 aa35.65■■■■□ 3.3
LIME1-203ENST00000465591 HECW1Q76N89 1606 aa35.64■■■■□ 3.3
LIME1-203ENST00000465591 KDM4FA0A1W2PPD8 638 aa35.58■■■■□ 3.29
LIME1-203ENST00000465591 ATP1B4Q9UN42 357 aaPredicted RBP35.58■■■■□ 3.29
LIME1-203ENST00000465591 ARAP3Q8WWN8 1544 aa35.57■■■■□ 3.29
LIME1-203ENST00000465591 LRRIQ1Q96JM4 1722 aa35.57■■■■□ 3.28
LIME1-203ENST00000465591 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP35.56■■■■□ 3.28
LIME1-203ENST00000465591 TTC37Q6PGP7 1564 aa35.54■■■■□ 3.28
LIME1-203ENST00000465591 NEO1Q92859 1461 aa35.5■■■■□ 3.27
LIME1-203ENST00000465591 PCF11O94913 1555 aaKnown RBP35.48■■■■□ 3.27
LIME1-203ENST00000465591 PHLDB1Q86UU1 1377 aa35.47■■■■□ 3.27
LIME1-203ENST00000465591 CLIP1P30622 1438 aa35.46■■■■□ 3.27
LIME1-203ENST00000465591 CASKIN1Q8WXD9 1431 aa35.42■■■■□ 3.26
LIME1-203ENST00000465591 ADGRL1O94910 1474 aa35.41■■■■□ 3.26
LIME1-203ENST00000465591 FRMPD1Q5SYB0 1578 aa35.4■■■■□ 3.26
LIME1-203ENST00000465591 RAPGEF3O95398 923 aa35.4■■■■□ 3.26
LIME1-203ENST00000465591 KIF14Q15058 1648 aa35.39■■■■□ 3.26
LIME1-203ENST00000465591 FANCAO15360 1455 aa35.37■■■■□ 3.25
LIME1-203ENST00000465591 TROQ12816 1431 aaPredicted RBP35.35■■■■□ 3.25
LIME1-203ENST00000465591 AKNAQ7Z591 1439 aa35.34■■■■□ 3.25
LIME1-203ENST00000465591 CDK11AQ9UQ88 783 aaPredicted RBP35.34■■■■□ 3.25
LIME1-203ENST00000465591 CFAP74Q9C0B2 1584 aa35.33■■■■□ 3.25
LIME1-203ENST00000465591 PLCH2O75038 1416 aa35.31■■■■□ 3.24
LIME1-203ENST00000465591 FYCO1Q9BQS8 1478 aa35.3■■■■□ 3.24
LIME1-203ENST00000465591 CCDC18Q5T9S5 1454 aa35.29■■■■□ 3.24
LIME1-203ENST00000465591 RICTORQ6R327 1708 aa35.29■■■■□ 3.24
LIME1-203ENST00000465591 MYO5CQ9NQX4 1742 aa35.29■■■■□ 3.24
LIME1-203ENST00000465591 DENND4BO75064 1496 aaPredicted RBP35.26■■■■□ 3.23
LIME1-203ENST00000465591 CEP162Q5TB80 1403 aa35.2■■■■□ 3.23
LIME1-203ENST00000465591 LOC105371045A0A1W2PR82 267 aa35.14■■■■□ 3.22
LIME1-203ENST00000465591 SCAPERQ9BY12 1400 aa35.14■■■■□ 3.22
LIME1-203ENST00000465591 CDC42BPBQ9Y5S2 1711 aa35.13■■■■□ 3.21
LIME1-203ENST00000465591 ZMYM4Q5VZL5 1548 aa35.12■■■■□ 3.21
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms