RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 CCNB3Q8WWL7 1395 aa22.48■■□□□ 1.19
LDLR-202ENST00000455727 CLSPNQ9HAW4 1339 aa22.47■■□□□ 1.19
LDLR-202ENST00000455727 CFAP43Q8NDM7 1665 aa22.45■■□□□ 1.18
LDLR-202ENST00000455727 GAPVD1Q14C86 1478 aa22.45■■□□□ 1.18
LDLR-202ENST00000455727 LRRC9Q6ZRR7 1453 aa22.45■■□□□ 1.18
LDLR-202ENST00000455727 AQRO60306 1485 aaKnown RBP eCLIP22.43■■□□□ 1.182e-7■■■■■ 26.9
LDLR-202ENST00000455727 PCF11O94913 1555 aaKnown RBP22.42■■□□□ 1.18
LDLR-202ENST00000455727 TARBP1Q13395 1621 aaKnown RBP22.41■■□□□ 1.18
LDLR-202ENST00000455727 TDRD9Q8NDG6 1382 aaKnown RBP22.41■■□□□ 1.18
LDLR-202ENST00000455727 FYCO1Q9BQS8 1478 aa22.4■■□□□ 1.18
LDLR-202ENST00000455727 DIEXFQ68CQ4 756 aaKnown RBP22.39■■□□□ 1.17
LDLR-202ENST00000455727 ZNF316A6NFI3 1004 aaPredicted RBP22.38■■□□□ 1.17
LDLR-202ENST00000455727 DHX57Q6P158 1386 aaKnown RBP22.37■■□□□ 1.17
LDLR-202ENST00000455727 CASKIN1Q8WXD9 1431 aa22.37■■□□□ 1.17
LDLR-202ENST00000455727 FHOD3Q2V2M9 1422 aa22.36■■□□□ 1.17
LDLR-202ENST00000455727 FMN1Q68DA7 1419 aa22.33■■□□□ 1.17
LDLR-202ENST00000455727 P3H3Q8IVL6 736 aa22.33■■□□□ 1.17
LDLR-202ENST00000455727 SAMD9Q5K651 1589 aa22.33■■□□□ 1.17
LDLR-202ENST00000455727 MRC2Q9UBG0 1479 aa22.29■■□□□ 1.16
LDLR-202ENST00000455727 PHLDB1Q86UU1 1377 aa22.28■■□□□ 1.16
LDLR-202ENST00000455727 PBRM1Q86U86 1689 aa22.27■■□□□ 1.16
LDLR-202ENST00000455727 SNAPC4Q5SXM2 1469 aa22.26■■□□□ 1.15
LDLR-202ENST00000455727 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.22■■□□□ 1.15
LDLR-202ENST00000455727 ATP1B4Q9UN42 357 aaPredicted RBP22.2■■□□□ 1.14
LDLR-202ENST00000455727 THOC2Q8NI27 1593 aaKnown RBP22.2■■□□□ 1.14
LDLR-202ENST00000455727 RAB3GAP2Q9H2M9 1393 aa22.17■■□□□ 1.14
LDLR-202ENST00000455727 ADAMTS12P58397 1594 aa22.17■■□□□ 1.14
LDLR-202ENST00000455727 GRIN2BQ13224 1484 aa22.16■■□□□ 1.14
LDLR-202ENST00000455727 ITGAEP38570 1179 aa22.16■■□□□ 1.14
LDLR-202ENST00000455727 WDR62O43379 1518 aa22.16■■□□□ 1.14
LDLR-202ENST00000455727 SETD5Q9C0A6 1442 aa22.16■■□□□ 1.14
LDLR-202ENST00000455727 IFT140Q96RY7 1462 aa22.15■■□□□ 1.14
LDLR-202ENST00000455727 LRRIQ1Q96JM4 1722 aa22.14■■□□□ 1.14
LDLR-202ENST00000455727 IQGAP2Q13576 1575 aa22.11■■□□□ 1.13
LDLR-202ENST00000455727 FAM50AQ14320 339 aaKnown RBP22.1■■□□□ 1.13
LDLR-202ENST00000455727 MTUS2Q5JR59 1369 aa22.08■■□□□ 1.13
LDLR-202ENST00000455727 FGD6Q6ZV73 1430 aa22.07■■□□□ 1.12
LDLR-202ENST00000455727 MAPKBP1O60336 1514 aa22.05■■□□□ 1.12
LDLR-202ENST00000455727 EHBP1L1Q8N3D4 1523 aa22.04■■□□□ 1.12
LDLR-202ENST00000455727 CCDC18Q5T9S5 1454 aa22.04■■□□□ 1.12
LDLR-202ENST00000455727 SUPT6HQ7KZ85 1726 aaKnown RBP22.04■■□□□ 1.12
LDLR-202ENST00000455727 UGGT2Q9NYU1 1516 aa22.02■■□□□ 1.12
LDLR-202ENST00000455727 ZNF608Q9ULD9 1512 aaPredicted RBP22.02■■□□□ 1.12
LDLR-202ENST00000455727 HECW1Q76N89 1606 aa22.01■■□□□ 1.11
LDLR-202ENST00000455727 NCOA2Q15596 1464 aa22■■□□□ 1.11
LDLR-202ENST00000455727 MYOM3Q5VTT5 1437 aa21.98■■□□□ 1.11
LDLR-202ENST00000455727 ARHGEF11O15085 1522 aa21.98■■□□□ 1.11
LDLR-202ENST00000455727 ACIN1Q9UKV3 1341 aaKnown RBP21.98■■□□□ 1.11
LDLR-202ENST00000455727 CENPBP07199 599 aaPredicted RBP21.97■■□□□ 1.11
LDLR-202ENST00000455727 SCAF1Q9H7N4 1312 aaKnown RBP21.95■■□□□ 1.1
LDLR-202ENST00000455727 EIF4G3O43432 1585 aaKnown RBP21.95■■□□□ 1.1
LDLR-202ENST00000455727 KIAA0586Q9BVV6 1533 aa21.95■■□□□ 1.1
LDLR-202ENST00000455727 MAGI3Q5TCQ9 1506 aa21.92■■□□□ 1.1
LDLR-202ENST00000455727 EPRSP07814 1512 aaKnown RBP21.92■■□□□ 1.1
LDLR-202ENST00000455727 ERCC6Q03468 1493 aa21.91■■□□□ 1.1
LDLR-202ENST00000455727 MIER1Q8N108 512 aa21.91■■□□□ 1.1
LDLR-202ENST00000455727 HFM1A2PYH4 1435 aa21.9■■□□□ 1.1
LDLR-202ENST00000455727 NEUROD1Q13562 356 aa21.9■■□□□ 1.1
LDLR-202ENST00000455727 TIMELESSQ9UNS1 1208 aa21.9■■□□□ 1.1
LDLR-202ENST00000455727 GRIN2AQ12879 1464 aa21.9■■□□□ 1.1
LDLR-202ENST00000455727 PTPN23Q9H3S7 1636 aa21.89■■□□□ 1.09
LDLR-202ENST00000455727 MAGI1Q96QZ7 1491 aaPredicted RBP21.88■■□□□ 1.09
LDLR-202ENST00000455727 KIAA0556O60303 1618 aa21.87■■□□□ 1.09
LDLR-202ENST00000455727 PTPRKQ15262 1439 aa21.86■■□□□ 1.09
LDLR-202ENST00000455727 TCOF1Q13428 1488 aaKnown RBP21.86■■□□□ 1.09
LDLR-202ENST00000455727 DISP1Q96F81 1524 aa21.86■■□□□ 1.09
LDLR-202ENST00000455727 NAIPQ13075 1403 aa21.81■■□□□ 1.08
LDLR-202ENST00000455727 MIA2Q96PC5 1412 aa21.81■■□□□ 1.08
LDLR-202ENST00000455727 CDK13Q14004 1512 aaKnown RBP21.8■■□□□ 1.08
LDLR-202ENST00000455727 UACAQ9BZF9 1416 aa21.8■■□□□ 1.08
LDLR-202ENST00000455727 SYNJ2O15056 1496 aa21.8■■□□□ 1.08
LDLR-202ENST00000455727 SIN3AQ96ST3 1273 aa21.77■■□□□ 1.08
LDLR-202ENST00000455727 RAPGEF6Q8TEU7 1601 aa21.76■■□□□ 1.07
LDLR-202ENST00000455727 AKNAQ7Z591 1439 aa21.75■■□□□ 1.07
LDLR-202ENST00000455727 CEP170Q5SW79 1584 aa21.74■■□□□ 1.07
LDLR-202ENST00000455727 GCC2Q8IWJ2 1684 aa21.74■■□□□ 1.07
LDLR-202ENST00000455727 NUP153P49790 1475 aaKnown RBP21.73■■□□□ 1.07
LDLR-202ENST00000455727 CHMP7Q8WUX9 453 aaPredicted RBP21.72■■□□□ 1.07
LDLR-202ENST00000455727 NUP160Q12769 1436 aa21.69■■□□□ 1.06
LDLR-202ENST00000455727 PPP1R15AO75807 674 aaPredicted RBP21.67■■□□□ 1.06
LDLR-202ENST00000455727 CDK11AQ9UQ88 783 aaPredicted RBP21.67■■□□□ 1.06
LDLR-202ENST00000455727 CARMIL2Q6F5E8 1435 aa21.64■■□□□ 1.05
LDLR-202ENST00000455727 YTHDC1Q96MU7 727 aaKnown RBP21.63■■□□□ 1.05
LDLR-202ENST00000455727 GTF3C3Q9Y5Q9 886 aa21.63■■□□□ 1.05
LDLR-202ENST00000455727 ROCK1Q13464 1354 aa21.6■■□□□ 1.05
LDLR-202ENST00000455727 TONSLQ96HA7 1378 aa21.6■■□□□ 1.05
LDLR-202ENST00000455727 ARID3CA6NKF2 412 aa21.6■■□□□ 1.05
LDLR-202ENST00000455727 JPH4Q96JJ6 628 aa21.6■■□□□ 1.05
LDLR-202ENST00000455727 DNMT1P26358 1616 aaKnown RBP21.6■■□□□ 1.05
LDLR-202ENST00000455727 PELP1Q8IZL8 1130 aaKnown RBP21.59■■□□□ 1.05
LDLR-202ENST00000455727 RRP7BPQ9NSQ0 103 aa21.59■■□□□ 1.05
LDLR-202ENST00000455727 TROQ12816 1431 aaPredicted RBP21.59■■□□□ 1.05
LDLR-202ENST00000455727 ADCY10Q96PN6 1610 aa21.57■■□□□ 1.04
LDLR-202ENST00000455727 CHIC2Q9UKJ5 165 aa21.57■■□□□ 1.04
LDLR-202ENST00000455727 DAPK1P53355 1430 aa21.57■■□□□ 1.04
LDLR-202ENST00000455727 PLB1Q6P1J6 1458 aa21.56■■□□□ 1.04
LDLR-202ENST00000455727 FBLN2P98095 1184 aa21.56■■□□□ 1.04
LDLR-202ENST00000455727 ITSN2Q9NZM3 1697 aa21.55■■□□□ 1.04
LDLR-202ENST00000455727 KDM6BO15054 1643 aa21.55■■□□□ 1.04
LDLR-202ENST00000455727 ABCC5O15440 1437 aa21.53■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 101.2 ms