RNA–Protein interactions for RNA: ENST00000454849.5

MSH2-203, Transcript of mutS homolog 2, humanhuman

TSL 4

Gene MSH2, Length 560 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-203ENST00000454849 SHROOM2Q13796 1616 aa42.13■■■■■ 4.33
MSH2-203ENST00000454849 PRG4Q92954 1404 aaPredicted RBP42.11■■■■■ 4.33
MSH2-203ENST00000454849 KIAA0586Q9BVV6 1533 aa42.02■■■■■ 4.32
MSH2-203ENST00000454849 RAPGEF2Q9Y4G8 1499 aa41.95■■■■■ 4.31
MSH2-203ENST00000454849 TRHP20396 242 aaPredicted RBP41.87■■■■■ 4.29
MSH2-203ENST00000454849 CHIC1Q5VXU3 224 aa41.82■■■■■ 4.29
MSH2-203ENST00000454849 FAM9AQ8IZU1 332 aaPredicted RBP41.78■■■■■ 4.28
MSH2-203ENST00000454849 TTBK1Q5TCY1 1321 aaPredicted RBP41.77■■■■■ 4.28
MSH2-203ENST00000454849 CSRNP3Q8WYN3 585 aa41.74■■■■■ 4.27
MSH2-203ENST00000454849 IQGAP2Q13576 1575 aa41.74■■■■■ 4.27
MSH2-203ENST00000454849 PRXQ9BXM0 1461 aa41.72■■■■■ 4.27
MSH2-203ENST00000454849 CARMIL2Q6F5E8 1435 aa41.59■■■■■ 4.25
MSH2-203ENST00000454849 PTPRGP23470 1445 aa41.55■■■■■ 4.24
MSH2-203ENST00000454849 DISP1Q96F81 1524 aa41.52■■■■■ 4.24
MSH2-203ENST00000454849 EEA1Q15075 1411 aa41.52■■■■■ 4.24
MSH2-203ENST00000454849 TNIKQ9UKE5 1360 aa41.5■■■■■ 4.23
MSH2-203ENST00000454849 UGGT2Q9NYU1 1516 aa41.48■■■■■ 4.23
MSH2-203ENST00000454849 CTTNBP2Q8WZ74 1663 aa41.46■■■■■ 4.23
MSH2-203ENST00000454849 ADCY10Q96PN6 1610 aa41.44■■■■■ 4.22
MSH2-203ENST00000454849 NPM1P06748 294 aaKnown RBP eCLIP41.43■■■■■ 4.22
MSH2-203ENST00000454849 EHMT2Q96KQ7 1210 aa41.41■■■■■ 4.22
MSH2-203ENST00000454849 KIAA0556O60303 1618 aa41.34■■■■■ 4.21
MSH2-203ENST00000454849 RANGAP1P46060 587 aaPredicted RBP41.31■■■■■ 4.2
MSH2-203ENST00000454849 P3H3Q8IVL6 736 aa41.28■■■■■ 4.2
MSH2-203ENST00000454849 GOLGA3Q08378 1498 aa41.22■■■■■ 4.19
MSH2-203ENST00000454849 UACAQ9BZF9 1416 aa41.22■■■■■ 4.19
MSH2-203ENST00000454849 FAM69CQ0P6D2 419 aa41.14■■■■■ 4.18
MSH2-203ENST00000454849 KIF21BO75037 1637 aa41.14■■■■■ 4.18
MSH2-203ENST00000454849 ABCC2Q92887 1545 aa41.13■■■■■ 4.17
MSH2-203ENST00000454849 MAPKBP1O60336 1514 aa41.11■■■■■ 4.17
MSH2-203ENST00000454849 UHRF1BP1LA0JNW5 1464 aa41.1■■■■■ 4.17
MSH2-203ENST00000454849 PLB1Q6P1J6 1458 aa41.09■■■■■ 4.17
MSH2-203ENST00000454849 UBTFP17480 764 aaKnown RBP41.08■■■■■ 4.17
MSH2-203ENST00000454849 KIF13AQ9H1H9 1805 aa41.05■■■■■ 4.16
MSH2-203ENST00000454849 ABCC10Q5T3U5 1492 aa41.04■■■■■ 4.16
MSH2-203ENST00000454849 ASXL2Q76L83 1435 aa40.98■■■■■ 4.15
MSH2-203ENST00000454849 ARID3CA6NKF2 412 aa40.95■■■■■ 4.15
MSH2-203ENST00000454849 SAMD9Q5K651 1589 aa40.95■■■■■ 4.15
MSH2-203ENST00000454849 DIP2BQ9P265 1576 aa40.95■■■■■ 4.15
MSH2-203ENST00000454849 KDM5BQ9UGL1 1544 aa40.94■■■■■ 4.14
MSH2-203ENST00000454849 ABCA8O94911 1581 aa40.91■■■■■ 4.14
MSH2-203ENST00000454849 ZCCHC11Q5TAX3 1644 aaKnown RBP40.89■■■■■ 4.14
MSH2-203ENST00000454849 FHOD3Q2V2M9 1422 aa40.88■■■■■ 4.13
MSH2-203ENST00000454849 TSPOAP1O95153 1857 aa40.74■■■■■ 4.11
MSH2-203ENST00000454849 KCNH8Q96L42 1107 aa40.71■■■■■ 4.11
MSH2-203ENST00000454849 EPRSP07814 1512 aaKnown RBP40.69■■■■■ 4.1
MSH2-203ENST00000454849 EFCAB5A4FU69 1503 aa40.67■■■■■ 4.1
MSH2-203ENST00000454849 ATP10BO94823 1461 aa40.67■■■■■ 4.1
MSH2-203ENST00000454849 WDR7Q9Y4E6 1490 aa40.66■■■■■ 4.1
MSH2-203ENST00000454849 RAPGEF6Q8TEU7 1601 aa40.65■■■■■ 4.1
MSH2-203ENST00000454849 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP40.64■■■■■ 4.1
MSH2-203ENST00000454849 HNRNPUL2Q1KMD3 747 aaKnown RBP40.64■■■■■ 4.1
MSH2-203ENST00000454849 GLI2P10070 1586 aa40.61■■■■■ 4.09
MSH2-203ENST00000454849 ARHGAP35Q9NRY4 1499 aa40.58■■■■■ 4.09
MSH2-203ENST00000454849 NUP153P49790 1475 aaKnown RBP40.56■■■■■ 4.08
MSH2-203ENST00000454849 ATP1B4Q9UN42 357 aaPredicted RBP40.51■■■■■ 4.08
MSH2-203ENST00000454849 PPRC1Q5VV67 1664 aaKnown RBP40.47■■■■■ 4.07
MSH2-203ENST00000454849 MAP3K4Q9Y6R4 1608 aa40.45■■■■■ 4.07
MSH2-203ENST00000454849 KDM6BO15054 1643 aa40.38■■■■■ 4.06
MSH2-203ENST00000454849 CD109Q6YHK3 1445 aa40.38■■■■■ 4.05
MSH2-203ENST00000454849 FMN1Q68DA7 1419 aa40.36■■■■■ 4.05
MSH2-203ENST00000454849 PLEKHD1A6NEE1 506 aa40.32■■■■■ 4.05
MSH2-203ENST00000454849 CDK13Q14004 1512 aaKnown RBP40.32■■■■■ 4.04
MSH2-203ENST00000454849 TEX14Q8IWB6 1497 aa40.28■■■■■ 4.04
MSH2-203ENST00000454849 CLIP1P30622 1438 aa40.28■■■■■ 4.04
MSH2-203ENST00000454849 LOC105371045A0A1W2PR82 267 aa40.27■■■■■ 4.04
MSH2-203ENST00000454849 CFAP43Q8NDM7 1665 aa40.25■■■■■ 4.03
MSH2-203ENST00000454849 COL17A1Q9UMD9 1497 aaPredicted RBP40.25■■■■■ 4.03
MSH2-203ENST00000454849 MAGI3Q5TCQ9 1506 aa40.2■■■■■ 4.03
MSH2-203ENST00000454849 HECW1Q76N89 1606 aa40.19■■■■■ 4.02
MSH2-203ENST00000454849 ABCA9Q8IUA7 1624 aa40.15■■■■■ 4.02
MSH2-203ENST00000454849 PCF11O94913 1555 aaKnown RBP40.08■■■■■ 4.01
MSH2-203ENST00000454849 CASKIN1Q8WXD9 1431 aa40.06■■■■■ 4
MSH2-203ENST00000454849 CEP162Q5TB80 1403 aa40.04■■■■■ 4
MSH2-203ENST00000454849 LRRIQ1Q96JM4 1722 aa40.03■■■■■ 4
MSH2-203ENST00000454849 CDK11AQ9UQ88 783 aaPredicted RBP40.03■■■■■ 4
MSH2-203ENST00000454849 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP40.01■■■■■ 42e-10■■□□□ 13.9
MSH2-203ENST00000454849 TTC37Q6PGP7 1564 aa39.96■■■■□ 3.99
MSH2-203ENST00000454849 AEBP2Q6ZN18 517 aaPredicted RBP39.91■■■■□ 3.98
MSH2-203ENST00000454849 FYCO1Q9BQS8 1478 aa39.91■■■■□ 3.98
MSH2-203ENST00000454849 TROQ12816 1431 aaPredicted RBP39.9■■■■□ 3.98
MSH2-203ENST00000454849 RAPGEF3O95398 923 aa39.89■■■■□ 3.98
MSH2-203ENST00000454849 ARAP3Q8WWN8 1544 aa39.86■■■■□ 3.97
MSH2-203ENST00000454849 KIF14Q15058 1648 aa39.86■■■■□ 3.97
MSH2-203ENST00000454849 CCDC18Q5T9S5 1454 aa39.86■■■■□ 3.97
MSH2-203ENST00000454849 NEO1Q92859 1461 aa39.86■■■■□ 3.97
MSH2-203ENST00000454849 PHLDB1Q86UU1 1377 aa39.83■■■■□ 3.97
MSH2-203ENST00000454849 FANCAO15360 1455 aa39.81■■■■□ 3.96
MSH2-203ENST00000454849 AKNAQ7Z591 1439 aa39.79■■■■□ 3.96
MSH2-203ENST00000454849 PLCH2O75038 1416 aa39.76■■■■□ 3.96
MSH2-203ENST00000454849 KDM4FA0A1W2PPD8 638 aa39.76■■■■□ 3.96
MSH2-203ENST00000454849 EFCAB2Q5VUJ9 269 aa39.67■■■■□ 3.94
MSH2-203ENST00000454849 DENND4BO75064 1496 aaPredicted RBP39.66■■■■□ 3.94
MSH2-203ENST00000454849 MYO5CQ9NQX4 1742 aa39.65■■■■□ 3.94
MSH2-203ENST00000454849 FRMPD1Q5SYB0 1578 aa39.63■■■■□ 3.94
MSH2-203ENST00000454849 CFAP74Q9C0B2 1584 aa39.63■■■■□ 3.94
MSH2-203ENST00000454849 ARHGAP5Q13017 1502 aa39.6■■■■□ 3.93
MSH2-203ENST00000454849 SCAPERQ9BY12 1400 aa39.6■■■■□ 3.93
MSH2-203ENST00000454849 ADGRL1O94910 1474 aa39.6■■■■□ 3.93
MSH2-203ENST00000454849 MTUS2Q5JR59 1369 aa39.58■■■■□ 3.93
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms