RNA–Protein interactions for RNA: ENST00000454849.5

MSH2-203, Transcript of mutS homolog 2, humanhuman

TSL 4

Gene MSH2, Length 560 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-203ENST00000454849 NISCHQ9Y2I1 1504 aa60.64■■■■■ 7.3
MSH2-203ENST00000454849 CCDC180Q9P1Z9 1646 aa53.84■■■■■ 6.21
MSH2-203ENST00000454849 ABCC9O60706 1549 aa53.28■■■■■ 6.12
MSH2-203ENST00000454849 DCAF8L2P0C7V8 631 aa51.15■■■■■ 5.78
MSH2-203ENST00000454849 RB1CC1Q8TDY2 1594 aa50.9■■■■■ 5.74
MSH2-203ENST00000454849 NACADO15069 1562 aa50.76■■■■■ 5.72
MSH2-203ENST00000454849 ZCCHC6Q5VYS8 1495 aaKnown RBP50.41■■■■■ 5.66
MSH2-203ENST00000454849 MYO15BQ96JP2 1530 aa50.25■■■■■ 5.63
MSH2-203ENST00000454849 DCAF1Q9Y4B6 1507 aa49.98■■■■■ 5.59
MSH2-203ENST00000454849 PABPN1Q86U42 306 aaKnown RBP eCLIP49.89■■■■■ 5.58
MSH2-203ENST00000454849 UNC13AQ9UPW8 1703 aa49.77■■■■■ 5.56
MSH2-203ENST00000454849 BICRAQ9NZM4 1560 aa49.45■■■■■ 5.51
MSH2-203ENST00000454849 SCRIBQ14160 1630 aa49.38■■■■■ 5.5
MSH2-203ENST00000454849 DNAJC5BQ9UF47 199 aa49.26■■■■■ 5.48
MSH2-203ENST00000454849 SHROOM4Q9ULL8 1493 aa48.63■■■■■ 5.38
MSH2-203ENST00000454849 EIF4G1Q04637 1599 aaKnown RBP48.15■■■■■ 5.3
MSH2-203ENST00000454849 CC2D2AQ9P2K1 1620 aa48.06■■■■■ 5.28
MSH2-203ENST00000454849 CECR2Q9BXF3 1484 aa47.82■■■■■ 5.25
MSH2-203ENST00000454849 SMARCA4P51532 1647 aa47.09■■■■■ 5.13
MSH2-203ENST00000454849 BAZ1AQ9NRL2 1556 aaPredicted RBP46.96■■■■■ 5.11
MSH2-203ENST00000454849 ATAD2BQ9ULI0 1458 aa46.95■■■■■ 5.11
MSH2-203ENST00000454849 NCAPD3P42695 1498 aa46.89■■■■■ 5.1
MSH2-203ENST00000454849 MROH2BQ7Z745 1585 aa46.82■■■■■ 5.09
MSH2-203ENST00000454849 SMARCA2P51531 1590 aa46.77■■■■■ 5.08
MSH2-203ENST00000454849 HMGXB3Q12766 1538 aa46.56■■■■■ 5.04
MSH2-203ENST00000454849 BAZ1BQ9UIG0 1483 aaKnown RBP46.55■■■■■ 5.04
MSH2-203ENST00000454849 PEG3Q9GZU2 1588 aa46.52■■■■■ 5.04
MSH2-203ENST00000454849 WIZO95785 1651 aa46.3■■■■■ 5
MSH2-203ENST00000454849 RSF1Q96T23 1441 aaPredicted RBP46.19■■■■■ 4.98
MSH2-203ENST00000454849 NESP48681 1621 aa46.04■■■■■ 4.96
MSH2-203ENST00000454849 ERCC6Q03468 1493 aa45.88■■■■■ 4.94
MSH2-203ENST00000454849 TOP2AP11388 1531 aaKnown RBP45.68■■■■■ 4.9
MSH2-203ENST00000454849 LAMC3Q9Y6N6 1575 aa45.64■■■■■ 4.9
MSH2-203ENST00000454849 CADPSQ9ULU8 1353 aa45.58■■■■■ 4.89
MSH2-203ENST00000454849 PDS5BQ9NTI5 1447 aa45.43■■■■■ 4.86
MSH2-203ENST00000454849 KIF21AQ7Z4S6 1674 aa45.35■■■■■ 4.85
MSH2-203ENST00000454849 CUX2O14529 1486 aa45.32■■■■■ 4.85
MSH2-203ENST00000454849 CCDC88BA6NC98 1476 aa45.27■■■■■ 4.84
MSH2-203ENST00000454849 CFTRP13569 1480 aa45.21■■■■■ 4.83
MSH2-203ENST00000454849 THOC2Q8NI27 1593 aaKnown RBP45.2■■■■■ 4.83
MSH2-203ENST00000454849 SUPT5HO00267 1087 aaKnown RBP45.09■■■■■ 4.81
MSH2-203ENST00000454849 FANCD2Q9BXW9 1451 aa45.08■■■■■ 4.81
MSH2-203ENST00000454849 CEP164Q9UPV0 1460 aa45■■■■■ 4.79
MSH2-203ENST00000454849 MRC2Q9UBG0 1479 aa44.98■■■■■ 4.79
MSH2-203ENST00000454849 WDR62O43379 1518 aa44.79■■■■■ 4.76
MSH2-203ENST00000454849 PRDM2Q13029 1718 aa44.7■■■■■ 4.75
MSH2-203ENST00000454849 URB2Q14146 1524 aaKnown RBP44.66■■■■■ 4.74
MSH2-203ENST00000454849 DNAJC5Q9H3Z4 198 aa44.42■■■■■ 4.7
MSH2-203ENST00000454849 TOPBP1Q92547 1522 aa44.31■■■■■ 4.68
MSH2-203ENST00000454849 DNMBPQ6XZF7 1577 aa44.18■■■■■ 4.66
MSH2-203ENST00000454849 ABCC8Q09428 1581 aa44.15■■■■■ 4.66
MSH2-203ENST00000454849 IFT140Q96RY7 1462 aa44.05■■■■■ 4.64
MSH2-203ENST00000454849 ZNF608Q9ULD9 1512 aaPredicted RBP44.02■■■■■ 4.64
MSH2-203ENST00000454849 POLA1P09884 1462 aaPredicted RBP43.92■■■■■ 4.62
MSH2-203ENST00000454849 CUX1P39880 1505 aa43.92■■■■■ 4.62
MSH2-203ENST00000454849 RAD54L2Q9Y4B4 1467 aa43.86■■■■■ 4.61
MSH2-203ENST00000454849 FGD5Q6ZNL6 1462 aa43.81■■■■■ 4.6
MSH2-203ENST00000454849 SOGA1O94964 1423 aa43.8■■■■■ 4.6
MSH2-203ENST00000454849 TARBP1Q13395 1621 aaKnown RBP43.8■■■■■ 4.6
MSH2-203ENST00000454849 AQRO60306 1485 aaKnown RBP eCLIP43.76■■■■■ 4.6
MSH2-203ENST00000454849 EIF4G3O43432 1585 aaKnown RBP43.7■■■■■ 4.59
MSH2-203ENST00000454849 TDRD9Q8NDG6 1382 aaKnown RBP43.67■■■■■ 4.58
MSH2-203ENST00000454849 OSCARQ8IYS5 282 aa43.59■■■■■ 4.57
MSH2-203ENST00000454849 WRNQ14191 1432 aaPredicted RBP eCLIP43.53■■■■■ 4.56
MSH2-203ENST00000454849 SYNJ1O43426 1573 aa43.46■■■■■ 4.55
MSH2-203ENST00000454849 FBLN2P98095 1184 aa43.4■■■■■ 4.54
MSH2-203ENST00000454849 TOP2BQ02880 1626 aa43.37■■■■■ 4.53
MSH2-203ENST00000454849 BIVM-ERCC5R4GMW8 1640 aa43.33■■■■■ 4.53
MSH2-203ENST00000454849 WDR97A6NE52 1622 aa43.31■■■■■ 4.52
MSH2-203ENST00000454849 ABCA10Q8WWZ4 1543 aa43.28■■■■■ 4.52
MSH2-203ENST00000454849 SNAPC4Q5SXM2 1469 aa43.27■■■■■ 4.52
MSH2-203ENST00000454849 GAPVD1Q14C86 1478 aa43.24■■■■■ 4.51
MSH2-203ENST00000454849 GRIN2BQ13224 1484 aa43.23■■■■■ 4.51
MSH2-203ENST00000454849 CHD1O14646 1710 aa43.22■■■■■ 4.51
MSH2-203ENST00000454849 CHMP7Q8WUX9 453 aaPredicted RBP43.13■■■■■ 4.49
MSH2-203ENST00000454849 ABCA5Q8WWZ7 1642 aa43.11■■■■■ 4.49
MSH2-203ENST00000454849 PBRM1Q86U86 1689 aa43.08■■■■■ 4.49
MSH2-203ENST00000454849 MAGI1Q96QZ7 1491 aaPredicted RBP43.08■■■■■ 4.49
MSH2-203ENST00000454849 TRIM41Q8WV44 630 aa43.05■■■■■ 4.48
MSH2-203ENST00000454849 SYNJ2O15056 1496 aa42.97■■■■■ 4.47
MSH2-203ENST00000454849 RIMBP3CA6NJZ7 1639 aa42.84■■■■■ 4.45
MSH2-203ENST00000454849 RIMBP3BA6NNM3 1639 aa42.84■■■■■ 4.45
MSH2-203ENST00000454849 RIMBP3Q9UFD9 1639 aa42.84■■■■■ 4.45
MSH2-203ENST00000454849 ARHGEF11O15085 1522 aa42.81■■■■■ 4.44
MSH2-203ENST00000454849 ADAMTS12P58397 1594 aa42.74■■■■■ 4.43
MSH2-203ENST00000454849 ERICH3Q5RHP9 1530 aa42.72■■■■■ 4.43
MSH2-203ENST00000454849 CLASP1Q7Z460 1538 aa42.7■■■■■ 4.43
MSH2-203ENST00000454849 FHAD1B1AJZ9 1412 aa42.7■■■■■ 4.43
MSH2-203ENST00000454849 GRIN2AQ12879 1464 aa42.68■■■■■ 4.42
MSH2-203ENST00000454849 CYB5RLQ6IPT4 315 aa42.62■■■■■ 4.41
MSH2-203ENST00000454849 KIF27Q86VH2 1401 aa42.62■■■■■ 4.41
MSH2-203ENST00000454849 IGF1RP08069 1367 aa42.55■■■■■ 4.4
MSH2-203ENST00000454849 CEP170Q5SW79 1584 aa42.51■■■■■ 4.4
MSH2-203ENST00000454849 ARAP1Q96P48 1450 aa42.48■■■■■ 4.39
MSH2-203ENST00000454849 NUP160Q12769 1436 aa42.47■■■■■ 4.39
MSH2-203ENST00000454849 RUSC2Q8N2Y8 1516 aa42.34■■■■■ 4.37
MSH2-203ENST00000454849 CARMIL1Q5VZK9 1371 aa42.29■■■■■ 4.36
MSH2-203ENST00000454849 ERCC6L2Q5T890 1561 aa42.27■■■■■ 4.36
MSH2-203ENST00000454849 CUL7Q14999 1698 aa42.25■■■■■ 4.35
MSH2-203ENST00000454849 JPH4Q96JJ6 628 aa42.18■■■■■ 4.34
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms