RNA–Protein interactions for RNA: ENST00000452973.6

VTA1-203, Transcript of vesicle trafficking 1, humanhuman

TSL 2 BASIC

Gene VTA1, Length 3,177 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1-203ENST00000452973 MRC2Q9UBG0 1479 aa17.63■□□□□ 0.41
VTA1-203ENST00000452973 ABCA5Q8WWZ7 1642 aa17.63■□□□□ 0.41
VTA1-203ENST00000452973 FHAD1B1AJZ9 1412 aa17.6■□□□□ 0.41
VTA1-203ENST00000452973 TARBP1Q13395 1621 aaKnown RBP17.59■□□□□ 0.41
VTA1-203ENST00000452973 ERCC6Q03468 1493 aa17.58■□□□□ 0.41
VTA1-203ENST00000452973 TIAM1Q13009 1591 aa17.56■□□□□ 0.4
VTA1-203ENST00000452973 CCNB3Q8WWL7 1395 aa17.56■□□□□ 0.4
VTA1-203ENST00000452973 CTTNBP2Q8WZ74 1663 aa17.56■□□□□ 0.4
VTA1-203ENST00000452973 PCF11O94913 1555 aaKnown RBP17.55■□□□□ 0.4
VTA1-203ENST00000452973 FAM50AQ14320 339 aaKnown RBP17.54■□□□□ 0.4
VTA1-203ENST00000452973 ZNF608Q9ULD9 1512 aaPredicted RBP17.53■□□□□ 0.4
VTA1-203ENST00000452973 RRBP1Q9P2E9 1410 aaKnown RBP17.52■□□□□ 0.4
VTA1-203ENST00000452973 LRRC9Q6ZRR7 1453 aa17.52■□□□□ 0.4
VTA1-203ENST00000452973 EFCAB5A4FU69 1503 aa17.51■□□□□ 0.39
VTA1-203ENST00000452973 PHLDB1Q86UU1 1377 aa17.49■□□□□ 0.39
VTA1-203ENST00000452973 FMN1Q68DA7 1419 aa17.48■□□□□ 0.39
VTA1-203ENST00000452973 CASKIN1Q8WXD9 1431 aa17.47■□□□□ 0.39
VTA1-203ENST00000452973 ARID3CA6NKF2 412 aa17.47■□□□□ 0.39
VTA1-203ENST00000452973 PBRM1Q86U86 1689 aa17.47■□□□□ 0.39
VTA1-203ENST00000452973 GRIN2BQ13224 1484 aa17.46■□□□□ 0.39
VTA1-203ENST00000452973 IFT140Q96RY7 1462 aa17.46■□□□□ 0.39
VTA1-203ENST00000452973 FBLN2P98095 1184 aa17.46■□□□□ 0.39
VTA1-203ENST00000452973 MAP3K1Q13233 1512 aa17.46■□□□□ 0.38
VTA1-203ENST00000452973 FYCO1Q9BQS8 1478 aa17.45■□□□□ 0.38
VTA1-203ENST00000452973 WDR62O43379 1518 aa17.44■□□□□ 0.38
VTA1-203ENST00000452973 MTUS2Q5JR59 1369 aa17.42■□□□□ 0.38
VTA1-203ENST00000452973 DHX57Q6P158 1386 aaKnown RBP17.4■□□□□ 0.38
VTA1-203ENST00000452973 ADAMTS12P58397 1594 aa17.4■□□□□ 0.38
VTA1-203ENST00000452973 CFAP43Q8NDM7 1665 aa17.39■□□□□ 0.37
VTA1-203ENST00000452973 DIEXFQ68CQ4 756 aaKnown RBP17.39■□□□□ 0.37
VTA1-203ENST00000452973 SNAPC4Q5SXM2 1469 aa17.39■□□□□ 0.37
VTA1-203ENST00000452973 SAMD9Q5K651 1589 aa17.38■□□□□ 0.37
VTA1-203ENST00000452973 CHMP7Q8WUX9 453 aaPredicted RBP17.38■□□□□ 0.37
VTA1-203ENST00000452973 IQGAP2Q13576 1575 aa17.35■□□□□ 0.37
VTA1-203ENST00000452973 ZNF316A6NFI3 1004 aaPredicted RBP17.35■□□□□ 0.37
VTA1-203ENST00000452973 RAB3GAP2Q9H2M9 1393 aa17.35■□□□□ 0.37
VTA1-203ENST00000452973 EIF4G3O43432 1585 aaKnown RBP17.33■□□□□ 0.37
VTA1-203ENST00000452973 THOC2Q8NI27 1593 aaKnown RBP17.3■□□□□ 0.36
VTA1-203ENST00000452973 SETD5Q9C0A6 1442 aa17.28■□□□□ 0.36
VTA1-203ENST00000452973 LRRIQ1Q96JM4 1722 aa17.28■□□□□ 0.36
VTA1-203ENST00000452973 GRIN2AQ12879 1464 aa17.27■□□□□ 0.36
VTA1-203ENST00000452973 CLSPNQ9HAW4 1339 aa17.26■□□□□ 0.35
VTA1-203ENST00000452973 FGD6Q6ZV73 1430 aa17.26■□□□□ 0.35
VTA1-203ENST00000452973 KIAA0586Q9BVV6 1533 aa17.25■□□□□ 0.35
VTA1-203ENST00000452973 NCOA2Q15596 1464 aa17.25■□□□□ 0.35
VTA1-203ENST00000452973 CDK13Q14004 1512 aaKnown RBP17.23■□□□□ 0.35
VTA1-203ENST00000452973 NEUROD1Q13562 356 aa17.22■□□□□ 0.35
VTA1-203ENST00000452973 MAGI3Q5TCQ9 1506 aa17.21■□□□□ 0.35
VTA1-203ENST00000452973 EPRSP07814 1512 aaKnown RBP17.2■□□□□ 0.34
VTA1-203ENST00000452973 UGGT2Q9NYU1 1516 aa17.2■□□□□ 0.34
VTA1-203ENST00000452973 MAGI1Q96QZ7 1491 aaPredicted RBP17.2■□□□□ 0.34
VTA1-203ENST00000452973 CHIC2Q9UKJ5 165 aa17.2■□□□□ 0.34
VTA1-203ENST00000452973 SYNJ2O15056 1496 aa17.19■□□□□ 0.34
VTA1-203ENST00000452973 MYOM3Q5VTT5 1437 aa17.19■□□□□ 0.34
VTA1-203ENST00000452973 HECW1Q76N89 1606 aa17.19■□□□□ 0.34
VTA1-203ENST00000452973 DISP1Q96F81 1524 aa17.19■□□□□ 0.34
VTA1-203ENST00000452973 CCDC18Q5T9S5 1454 aa17.19■□□□□ 0.34
VTA1-203ENST00000452973 SIN3AQ96ST3 1273 aa17.18■□□□□ 0.34
VTA1-203ENST00000452973 JPH4Q96JJ6 628 aa17.18■□□□□ 0.34
VTA1-203ENST00000452973 EHBP1L1Q8N3D4 1523 aa17.17■□□□□ 0.34
VTA1-203ENST00000452973 SUPT6HQ7KZ85 1726 aaKnown RBP17.17■□□□□ 0.34
VTA1-203ENST00000452973 KIAA0556O60303 1618 aa17.15■□□□□ 0.34
VTA1-203ENST00000452973 CEP170Q5SW79 1584 aa17.15■□□□□ 0.34
VTA1-203ENST00000452973 PTPRKQ15262 1439 aa17.15■□□□□ 0.34
VTA1-203ENST00000452973 RRP7BPQ9NSQ0 103 aa17.14■□□□□ 0.33
VTA1-203ENST00000452973 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.14■□□□□ 0.33
VTA1-203ENST00000452973 MAPKBP1O60336 1514 aa17.12■□□□□ 0.33
VTA1-203ENST00000452973 CDK11AQ9UQ88 783 aaPredicted RBP17.1■□□□□ 0.33
VTA1-203ENST00000452973 PLB1Q6P1J6 1458 aa17.09■□□□□ 0.33
VTA1-203ENST00000452973 NUP153P49790 1475 aaKnown RBP17.09■□□□□ 0.33
VTA1-203ENST00000452973 PTPN23Q9H3S7 1636 aa17.08■□□□□ 0.32
VTA1-203ENST00000452973 CARMIL2Q6F5E8 1435 aa17.07■□□□□ 0.32
VTA1-203ENST00000452973 MIER1Q8N108 512 aa17.07■□□□□ 0.32
VTA1-203ENST00000452973 ZNF644Q9H582 1327 aaPredicted RBP17.06■□□□□ 0.32
VTA1-203ENST00000452973 NUP160Q12769 1436 aa17.06■□□□□ 0.32
VTA1-203ENST00000452973 RAPGEF6Q8TEU7 1601 aa17.05■□□□□ 0.32
VTA1-203ENST00000452973 ARHGEF11O15085 1522 aa17.05■□□□□ 0.32
VTA1-203ENST00000452973 TRIM52Q96A61 297 aa17.04■□□□□ 0.32
VTA1-203ENST00000452973 YTHDC1Q96MU7 727 aaKnown RBP17.04■□□□□ 0.32
VTA1-203ENST00000452973 ZNF777Q9ULD5 760 aaPredicted RBP17.04■□□□□ 0.32
VTA1-203ENST00000452973 HFM1A2PYH4 1435 aa17.04■□□□□ 0.32
VTA1-203ENST00000452973 PRG4Q92954 1404 aaPredicted RBP17.03■□□□□ 0.32
VTA1-203ENST00000452973 NAIPQ13075 1403 aa17.03■□□□□ 0.32
VTA1-203ENST00000452973 CFDP1Q9UEE9 299 aaPredicted RBP16.98■□□□□ 0.31
VTA1-203ENST00000452973 MIA2Q96PC5 1412 aa16.97■□□□□ 0.31
VTA1-203ENST00000452973 TCOF1Q13428 1488 aaKnown RBP16.96■□□□□ 0.31
VTA1-203ENST00000452973 PLEKHD1A6NEE1 506 aa16.96■□□□□ 0.31
VTA1-203ENST00000452973 UACAQ9BZF9 1416 aa16.96■□□□□ 0.31
VTA1-203ENST00000452973 HIRIP3Q9BW71 556 aaPredicted RBP16.95■□□□□ 0.3
VTA1-203ENST00000452973 TROQ12816 1431 aaPredicted RBP16.94■□□□□ 0.3
VTA1-203ENST00000452973 TONSLQ96HA7 1378 aa16.93■□□□□ 0.3
VTA1-203ENST00000452973 PTPRGP23470 1445 aa16.92■□□□□ 0.3
VTA1-203ENST00000452973 FOXD1Q16676 465 aa16.92■□□□□ 0.3
VTA1-203ENST00000452973 CENPBP07199 599 aaPredicted RBP16.91■□□□□ 0.3
VTA1-203ENST00000452973 PPP1R15AO75807 674 aaPredicted RBP16.9■□□□□ 0.3
VTA1-203ENST00000452973 DAPK1P53355 1430 aa16.9■□□□□ 0.3
VTA1-203ENST00000452973 SCAF1Q9H7N4 1312 aaKnown RBP16.89■□□□□ 0.3
VTA1-203ENST00000452973 ACIN1Q9UKV3 1341 aaKnown RBP16.89■□□□□ 0.3
VTA1-203ENST00000452973 CHD1O14646 1710 aa16.89■□□□□ 0.29
VTA1-203ENST00000452973 KIF14Q15058 1648 aa16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 86.4 ms