RNA–Protein interactions for RNA: ENST00000452973.6

VTA1-203, Transcript of vesicle trafficking 1, humanhuman

TSL 2 BASIC

Gene VTA1, Length 3,177 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1-203ENST00000452973 NISCHQ9Y2I1 1504 aa25.32■■□□□ 1.64
VTA1-203ENST00000452973 CCDC180Q9P1Z9 1646 aa21.65■■□□□ 1.06
VTA1-203ENST00000452973 SHROOM4Q9ULL8 1493 aa21.47■■□□□ 1.03
VTA1-203ENST00000452973 DCAF8L2P0C7V8 631 aa21.4■■□□□ 1.02
VTA1-203ENST00000452973 ZCCHC6Q5VYS8 1495 aaKnown RBP21.3■■□□□ 1
VTA1-203ENST00000452973 SUPT5HO00267 1087 aaKnown RBP20.88■□□□□ 0.93
VTA1-203ENST00000452973 DCAF1Q9Y4B6 1507 aa20.7■□□□□ 0.9
VTA1-203ENST00000452973 ABCC9O60706 1549 aa20.6■□□□□ 0.89
VTA1-203ENST00000452973 SCRIBQ14160 1630 aa20.35■□□□□ 0.85
VTA1-203ENST00000452973 MYO15BQ96JP2 1530 aa20.24■□□□□ 0.83
VTA1-203ENST00000452973 NACADO15069 1562 aa20.16■□□□□ 0.82
VTA1-203ENST00000452973 CHIC1Q5VXU3 224 aa19.99■□□□□ 0.79
VTA1-203ENST00000452973 RB1CC1Q8TDY2 1594 aa19.95■□□□□ 0.78
VTA1-203ENST00000452973 RSF1Q96T23 1441 aaPredicted RBP19.9■□□□□ 0.78
VTA1-203ENST00000452973 CECR2Q9BXF3 1484 aa19.83■□□□□ 0.76
VTA1-203ENST00000452973 MROH2BQ7Z745 1585 aa19.69■□□□□ 0.74
VTA1-203ENST00000452973 PABPN1Q86U42 306 aaKnown RBP eCLIP19.67■□□□□ 0.74
VTA1-203ENST00000452973 UNC13AQ9UPW8 1703 aa19.59■□□□□ 0.73
VTA1-203ENST00000452973 WIZO95785 1651 aa19.56■□□□□ 0.72
VTA1-203ENST00000452973 BAZ1AQ9NRL2 1556 aaPredicted RBP19.48■□□□□ 0.71
VTA1-203ENST00000452973 LOC105371045A0A1W2PR82 267 aa19.45■□□□□ 0.7
VTA1-203ENST00000452973 TRIM41Q8WV44 630 aa19.44■□□□□ 0.7
VTA1-203ENST00000452973 BICRAQ9NZM4 1560 aa19.39■□□□□ 0.69
VTA1-203ENST00000452973 SMARCA4P51532 1647 aa19.36■□□□□ 0.69
VTA1-203ENST00000452973 FAM9AQ8IZU1 332 aaPredicted RBP19.34■□□□□ 0.69
VTA1-203ENST00000452973 EHMT2Q96KQ7 1210 aa19.26■□□□□ 0.67
VTA1-203ENST00000452973 TOP2AP11388 1531 aaKnown RBP19.21■□□□□ 0.67
VTA1-203ENST00000452973 CCDC88BA6NC98 1476 aa19.17■□□□□ 0.66
VTA1-203ENST00000452973 SMARCA2P51531 1590 aa19.1■□□□□ 0.65
VTA1-203ENST00000452973 PCGF6Q9BYE7 350 aa19.02■□□□□ 0.64
VTA1-203ENST00000452973 ABCC8Q09428 1581 aa19.01■□□□□ 0.63
VTA1-203ENST00000452973 ATAD2BQ9ULI0 1458 aa18.99■□□□□ 0.63
VTA1-203ENST00000452973 EIF4G1Q04637 1599 aaKnown RBP18.99■□□□□ 0.63
VTA1-203ENST00000452973 BAZ1BQ9UIG0 1483 aaKnown RBP18.96■□□□□ 0.63
VTA1-203ENST00000452973 PEG3Q9GZU2 1588 aa18.94■□□□□ 0.62
VTA1-203ENST00000452973 SOGA1O94964 1423 aa18.76■□□□□ 0.59
VTA1-203ENST00000452973 WRNQ14191 1432 aaPredicted RBP eCLIP18.74■□□□□ 0.59
VTA1-203ENST00000452973 TRIM26Q12899 539 aaPredicted RBP18.69■□□□□ 0.58
VTA1-203ENST00000452973 RUSC2Q8N2Y8 1516 aa18.68■□□□□ 0.58
VTA1-203ENST00000452973 NCAPD3P42695 1498 aa18.68■□□□□ 0.58
VTA1-203ENST00000452973 PPARGC1BQ86YN6 1023 aaKnown RBP18.68■□□□□ 0.58
VTA1-203ENST00000452973 CSRNP3Q8WYN3 585 aa18.65■□□□□ 0.58
VTA1-203ENST00000452973 UBTFP17480 764 aaKnown RBP18.63■□□□□ 0.57
VTA1-203ENST00000452973 HRCP23327 699 aa18.62■□□□□ 0.57
VTA1-203ENST00000452973 SYNJ1O43426 1573 aa18.61■□□□□ 0.57
VTA1-203ENST00000452973 HMGXB3Q12766 1538 aa18.61■□□□□ 0.57
VTA1-203ENST00000452973 EEA1Q15075 1411 aa18.52■□□□□ 0.56
VTA1-203ENST00000452973 TTBK1Q5TCY1 1321 aaPredicted RBP18.5■□□□□ 0.55
VTA1-203ENST00000452973 CC2D2AQ9P2K1 1620 aa18.47■□□□□ 0.55
VTA1-203ENST00000452973 CEP162Q5TB80 1403 aa18.46■□□□□ 0.55
VTA1-203ENST00000452973 RANGAP1P46060 587 aaPredicted RBP18.45■□□□□ 0.54
VTA1-203ENST00000452973 TNIKQ9UKE5 1360 aa18.43■□□□□ 0.54
VTA1-203ENST00000452973 CFTRP13569 1480 aa18.42■□□□□ 0.54
VTA1-203ENST00000452973 GOLGA3Q08378 1498 aa18.41■□□□□ 0.54
VTA1-203ENST00000452973 TOP2BQ02880 1626 aa18.4■□□□□ 0.54
VTA1-203ENST00000452973 CEP164Q9UPV0 1460 aa18.35■□□□□ 0.53
VTA1-203ENST00000452973 CUX1P39880 1505 aa18.35■□□□□ 0.53
VTA1-203ENST00000452973 CADPSQ9ULU8 1353 aa18.34■□□□□ 0.53
VTA1-203ENST00000452973 RAPGEF2Q9Y4G8 1499 aa18.31■□□□□ 0.52
VTA1-203ENST00000452973 BIVM-ERCC5R4GMW8 1640 aa18.3■□□□□ 0.52
VTA1-203ENST00000452973 KIF21BO75037 1637 aa18.25■□□□□ 0.51
VTA1-203ENST00000452973 DNAJC5BQ9UF47 199 aa18.23■□□□□ 0.51
VTA1-203ENST00000452973 CLIP1P30622 1438 aa18.23■□□□□ 0.51
VTA1-203ENST00000452973 KIF27Q86VH2 1401 aa18.2■□□□□ 0.5
VTA1-203ENST00000452973 NESP48681 1621 aa18.2■□□□□ 0.5
VTA1-203ENST00000452973 FANCD2Q9BXW9 1451 aa18.17■□□□□ 0.5
VTA1-203ENST00000452973 PRDM2Q13029 1718 aa18.15■□□□□ 0.5
VTA1-203ENST00000452973 CUX2O14529 1486 aa18.14■□□□□ 0.49
VTA1-203ENST00000452973 PRXQ9BXM0 1461 aa18.12■□□□□ 0.49
VTA1-203ENST00000452973 FGD5Q6ZNL6 1462 aa18.12■□□□□ 0.49
VTA1-203ENST00000452973 APLP2Q06481 763 aa18.11■□□□□ 0.49
VTA1-203ENST00000452973 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.11■□□□□ 0.49
VTA1-203ENST00000452973 ZEB1P37275 1124 aaPredicted RBP18.05■□□□□ 0.48
VTA1-203ENST00000452973 VPS8Q8N3P4 1428 aa18.05■□□□□ 0.48
VTA1-203ENST00000452973 ERICH3Q5RHP9 1530 aa18.04■□□□□ 0.48
VTA1-203ENST00000452973 IGF1RP08069 1367 aa18.04■□□□□ 0.48
VTA1-203ENST00000452973 CCER1Q8TC90 406 aaPredicted RBP18.03■□□□□ 0.48
VTA1-203ENST00000452973 RAD54L2Q9Y4B4 1467 aa18.02■□□□□ 0.48
VTA1-203ENST00000452973 CARMIL1Q5VZK9 1371 aa17.98■□□□□ 0.47
VTA1-203ENST00000452973 TOPBP1Q92547 1522 aa17.98■□□□□ 0.47
VTA1-203ENST00000452973 HNRNPUL2Q1KMD3 747 aaKnown RBP17.96■□□□□ 0.47
VTA1-203ENST00000452973 DNMBPQ6XZF7 1577 aa17.95■□□□□ 0.46
VTA1-203ENST00000452973 POLA1P09884 1462 aaPredicted RBP17.95■□□□□ 0.46
VTA1-203ENST00000452973 LAMC3Q9Y6N6 1575 aa17.94■□□□□ 0.46
VTA1-203ENST00000452973 ARAP1Q96P48 1450 aa17.92■□□□□ 0.46
VTA1-203ENST00000452973 PDS5BQ9NTI5 1447 aa17.91■□□□□ 0.46
VTA1-203ENST00000452973 URB2Q14146 1524 aaKnown RBP17.9■□□□□ 0.46
VTA1-203ENST00000452973 P3H3Q8IVL6 736 aa17.89■□□□□ 0.46
VTA1-203ENST00000452973 TDRD9Q8NDG6 1382 aaKnown RBP17.88■□□□□ 0.45
VTA1-203ENST00000452973 KANK4Q5T7N3 995 aaPredicted RBP17.87■□□□□ 0.45
VTA1-203ENST00000452973 ARHGAP35Q9NRY4 1499 aa17.86■□□□□ 0.45
VTA1-203ENST00000452973 ABCA10Q8WWZ4 1543 aa17.85■□□□□ 0.45
VTA1-203ENST00000452973 ATP1B4Q9UN42 357 aaPredicted RBP17.83■□□□□ 0.45
VTA1-203ENST00000452973 KIF21AQ7Z4S6 1674 aa17.81■□□□□ 0.44
VTA1-203ENST00000452973 GAPVD1Q14C86 1478 aa17.72■□□□□ 0.43
VTA1-203ENST00000452973 ITGAEP38570 1179 aa17.7■□□□□ 0.42
VTA1-203ENST00000452973 FHOD3Q2V2M9 1422 aa17.68■□□□□ 0.42
VTA1-203ENST00000452973 CUL7Q14999 1698 aa17.65■□□□□ 0.42
VTA1-203ENST00000452973 AQRO60306 1485 aaKnown RBP eCLIP17.65■□□□□ 0.42
VTA1-203ENST00000452973 WDR97A6NE52 1622 aa17.65■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 115.4 ms