RNA–Protein interactions for RNA: ENST00000450303.6

PRPF40A-204, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 3

Gene PRPF40A, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-204ENST00000450303 RUSC2Q8N2Y8 1516 aa29.14■■■□□ 2.25
PRPF40A-204ENST00000450303 PRG4Q92954 1404 aaPredicted RBP29.13■■■□□ 2.25
PRPF40A-204ENST00000450303 CARMIL1Q5VZK9 1371 aa29.1■■■□□ 2.25
PRPF40A-204ENST00000450303 KIAA0586Q9BVV6 1533 aa29.03■■■□□ 2.24
PRPF40A-204ENST00000450303 RAPGEF2Q9Y4G8 1499 aa28.86■■■□□ 2.21
PRPF40A-204ENST00000450303 TTBK1Q5TCY1 1321 aaPredicted RBP28.82■■■□□ 2.2
PRPF40A-204ENST00000450303 IQGAP2Q13576 1575 aa28.81■■■□□ 2.2
PRPF40A-204ENST00000450303 ADCY10Q96PN6 1610 aa28.74■■■□□ 2.19
PRPF40A-204ENST00000450303 NPM1P06748 294 aaKnown RBP eCLIP28.74■■■□□ 2.19
PRPF40A-204ENST00000450303 CARMIL2Q6F5E8 1435 aa28.74■■■□□ 2.19
PRPF40A-204ENST00000450303 PTPRGP23470 1445 aa28.72■■■□□ 2.19
PRPF40A-204ENST00000450303 TNIKQ9UKE5 1360 aa28.68■■■□□ 2.18
PRPF40A-204ENST00000450303 DISP1Q96F81 1524 aa28.66■■■□□ 2.18
PRPF40A-204ENST00000450303 KIF13AQ9H1H9 1805 aa28.65■■■□□ 2.18
PRPF40A-204ENST00000450303 PRXQ9BXM0 1461 aa28.64■■■□□ 2.17
PRPF40A-204ENST00000450303 CTTNBP2Q8WZ74 1663 aa28.63■■■□□ 2.17
PRPF40A-204ENST00000450303 UGGT2Q9NYU1 1516 aa28.62■■■□□ 2.17
PRPF40A-204ENST00000450303 MAPKBP1O60336 1514 aa28.58■■■□□ 2.17
PRPF40A-204ENST00000450303 FAM69CQ0P6D2 419 aa28.57■■■□□ 2.16
PRPF40A-204ENST00000450303 CSRNP3Q8WYN3 585 aa28.57■■■□□ 2.16
PRPF40A-204ENST00000450303 KIAA0556O60303 1618 aa28.55■■■□□ 2.16
PRPF40A-204ENST00000450303 ABCC10Q5T3U5 1492 aa28.53■■■□□ 2.16
PRPF40A-204ENST00000450303 FAM9AQ8IZU1 332 aaPredicted RBP28.51■■■□□ 2.15
PRPF40A-204ENST00000450303 UACAQ9BZF9 1416 aa28.51■■■□□ 2.15
PRPF40A-204ENST00000450303 DIP2BQ9P265 1576 aa28.49■■■□□ 2.15
PRPF40A-204ENST00000450303 ABCC2Q92887 1545 aa28.48■■■□□ 2.15
PRPF40A-204ENST00000450303 UHRF1BP1LA0JNW5 1464 aa28.46■■■□□ 2.15
PRPF40A-204ENST00000450303 EEA1Q15075 1411 aa28.43■■■□□ 2.14
PRPF40A-204ENST00000450303 GOLGA3Q08378 1498 aa28.42■■■□□ 2.14
PRPF40A-204ENST00000450303 CHIC1Q5VXU3 224 aa28.4■■■□□ 2.14
PRPF40A-204ENST00000450303 TSPOAP1O95153 1857 aa28.38■■■□□ 2.13
PRPF40A-204ENST00000450303 ASXL2Q76L83 1435 aa28.38■■■□□ 2.13
PRPF40A-204ENST00000450303 P3H3Q8IVL6 736 aa28.37■■■□□ 2.13
PRPF40A-204ENST00000450303 PLB1Q6P1J6 1458 aa28.35■■■□□ 2.13
PRPF40A-204ENST00000450303 KDM5BQ9UGL1 1544 aa28.34■■■□□ 2.13
PRPF40A-204ENST00000450303 ZCCHC11Q5TAX3 1644 aaKnown RBP28.33■■■□□ 2.13
PRPF40A-204ENST00000450303 RANGAP1P46060 587 aaPredicted RBP28.3■■■□□ 2.12
PRPF40A-204ENST00000450303 ABCA8O94911 1581 aa28.26■■■□□ 2.11
PRPF40A-204ENST00000450303 EHMT2Q96KQ7 1210 aa28.25■■■□□ 2.11
PRPF40A-204ENST00000450303 GLI2P10070 1586 aa28.21■■■□□ 2.11
PRPF40A-204ENST00000450303 KIF21BO75037 1637 aa28.21■■■□□ 2.11
PRPF40A-204ENST00000450303 SAMD9Q5K651 1589 aa28.2■■■□□ 2.11
PRPF40A-204ENST00000450303 EPRSP07814 1512 aaKnown RBP28.2■■■□□ 2.1
PRPF40A-204ENST00000450303 ARID3CA6NKF2 412 aa28.19■■■□□ 2.1
PRPF40A-204ENST00000450303 KDM6BO15054 1643 aa28.16■■■□□ 2.1
PRPF40A-204ENST00000450303 PPRC1Q5VV67 1664 aaKnown RBP28.15■■■□□ 2.1
PRPF40A-204ENST00000450303 WDR7Q9Y4E6 1490 aa28.14■■■□□ 2.09
PRPF40A-204ENST00000450303 KCNH8Q96L42 1107 aa28.13■■■□□ 2.09
PRPF40A-204ENST00000450303 MAP3K4Q9Y6R4 1608 aa28.1■■■□□ 2.09
PRPF40A-204ENST00000450303 UBTFP17480 764 aaKnown RBP28.09■■■□□ 2.09
PRPF40A-204ENST00000450303 FHOD3Q2V2M9 1422 aa28.09■■■□□ 2.09
PRPF40A-204ENST00000450303 AEBP2Q6ZN18 517 aaPredicted RBP28.06■■■□□ 2.08
PRPF40A-204ENST00000450303 ATP10BO94823 1461 aa28.06■■■□□ 2.08
PRPF40A-204ENST00000450303 RAPGEF6Q8TEU7 1601 aa28.05■■■□□ 2.08
PRPF40A-204ENST00000450303 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28■■■□□ 2.07
PRPF40A-204ENST00000450303 HNRNPUL2Q1KMD3 747 aaKnown RBP28■■■□□ 2.07
PRPF40A-204ENST00000450303 TEX14Q8IWB6 1497 aa27.97■■■□□ 2.07
PRPF40A-204ENST00000450303 EFCAB5A4FU69 1503 aa27.97■■■□□ 2.07
PRPF40A-204ENST00000450303 CD109Q6YHK3 1445 aa27.96■■■□□ 2.07
PRPF40A-204ENST00000450303 CFAP43Q8NDM7 1665 aa27.95■■■□□ 2.07
PRPF40A-204ENST00000450303 COL17A1Q9UMD9 1497 aaPredicted RBP27.95■■■□□ 2.06
PRPF40A-204ENST00000450303 NUP153P49790 1475 aaKnown RBP27.94■■■□□ 2.06
PRPF40A-204ENST00000450303 MAGI3Q5TCQ9 1506 aa27.87■■■□□ 2.05
PRPF40A-204ENST00000450303 ARHGAP35Q9NRY4 1499 aa27.83■■■□□ 2.05
PRPF40A-204ENST00000450303 ATP1B4Q9UN42 357 aaPredicted RBP27.81■■■□□ 2.04
PRPF40A-204ENST00000450303 ABCA9Q8IUA7 1624 aa27.8■■■□□ 2.04
PRPF40A-204ENST00000450303 PLEKHD1A6NEE1 506 aa27.79■■■□□ 2.04
PRPF40A-204ENST00000450303 KDM4FA0A1W2PPD8 638 aa27.76■■■□□ 2.03
PRPF40A-204ENST00000450303 CDK13Q14004 1512 aaKnown RBP27.75■■■□□ 2.03
PRPF40A-204ENST00000450303 FMN1Q68DA7 1419 aa27.74■■■□□ 2.03
PRPF40A-204ENST00000450303 HECW1Q76N89 1606 aa27.67■■■□□ 2.02
PRPF40A-204ENST00000450303 ARAP3Q8WWN8 1544 aa27.65■■■□□ 2.02
PRPF40A-204ENST00000450303 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP27.62■■■□□ 2.018e-8■■□□□ 12
PRPF40A-204ENST00000450303 NEO1Q92859 1461 aa27.6■■■□□ 2.01
PRPF40A-204ENST00000450303 RAPGEF3O95398 923 aa27.6■■■□□ 2.01
PRPF40A-204ENST00000450303 TTC37Q6PGP7 1564 aa27.6■■■□□ 2.01
PRPF40A-204ENST00000450303 PHLDB1Q86UU1 1377 aa27.6■■■□□ 2.01
PRPF40A-204ENST00000450303 ADGRL1O94910 1474 aa27.59■■■□□ 2.01
PRPF40A-204ENST00000450303 LRRIQ1Q96JM4 1722 aa27.58■■■□□ 2.01
PRPF40A-204ENST00000450303 CDK11AQ9UQ88 783 aaPredicted RBP27.54■■■□□ 2
PRPF40A-204ENST00000450303 CLIP1P30622 1438 aa27.53■■■□□ 2
PRPF40A-204ENST00000450303 PCF11O94913 1555 aaKnown RBP27.52■■■□□ 2
PRPF40A-204ENST00000450303 FANCAO15360 1455 aa27.51■■■□□ 2
PRPF40A-204ENST00000450303 AKNAQ7Z591 1439 aa27.5■■□□□ 1.99
PRPF40A-204ENST00000450303 CASKIN1Q8WXD9 1431 aa27.49■■□□□ 1.99
PRPF40A-204ENST00000450303 FRMPD1Q5SYB0 1578 aa27.48■■□□□ 1.99
PRPF40A-204ENST00000450303 KIF14Q15058 1648 aa27.47■■□□□ 1.99
PRPF40A-204ENST00000450303 TROQ12816 1431 aaPredicted RBP27.46■■□□□ 1.99
PRPF40A-204ENST00000450303 CFAP74Q9C0B2 1584 aa27.46■■□□□ 1.99
PRPF40A-204ENST00000450303 DENND4BO75064 1496 aaPredicted RBP27.44■■□□□ 1.98
PRPF40A-204ENST00000450303 PLCH2O75038 1416 aa27.44■■□□□ 1.98
PRPF40A-204ENST00000450303 RICTORQ6R327 1708 aa27.41■■□□□ 1.98
PRPF40A-204ENST00000450303 MYO5CQ9NQX4 1742 aa27.41■■□□□ 1.98
PRPF40A-204ENST00000450303 CCDC18Q5T9S5 1454 aa27.39■■□□□ 1.98
PRPF40A-204ENST00000450303 FYCO1Q9BQS8 1478 aa27.38■■□□□ 1.97
PRPF40A-204ENST00000450303 EFCAB2Q5VUJ9 269 aa27.37■■□□□ 1.97
PRPF40A-204ENST00000450303 SCAPERQ9BY12 1400 aa27.36■■□□□ 1.97
PRPF40A-204ENST00000450303 LOC105371045A0A1W2PR82 267 aa27.32■■□□□ 1.96
PRPF40A-204ENST00000450303 ARID4BQ4LE39 1312 aaPredicted RBP27.32■■□□□ 1.96
PRPF40A-204ENST00000450303 ARHGAP5Q13017 1502 aa27.31■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms