RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 CEP170Q5SW79 1584 aa12.33□□□□□ -0.44
VPS41-208ENST00000448833 SHROOM2Q13796 1616 aa12.32□□□□□ -0.44
VPS41-208ENST00000448833 KIF27Q86VH2 1401 aa12.28□□□□□ -0.44
VPS41-208ENST00000448833 JPH4Q96JJ6 628 aa12.27□□□□□ -0.45
VPS41-208ENST00000448833 CUL7Q14999 1698 aa12.26□□□□□ -0.45
VPS41-208ENST00000448833 ERCC6L2Q5T890 1561 aa12.24□□□□□ -0.45
VPS41-208ENST00000448833 PRG4Q92954 1404 aaPredicted RBP12.24□□□□□ -0.45
VPS41-208ENST00000448833 MSH5O43196 834 aa12.23□□□□□ -0.45
VPS41-208ENST00000448833 IGF1RP08069 1367 aa12.22□□□□□ -0.45
VPS41-208ENST00000448833 RUSC2Q8N2Y8 1516 aa12.21□□□□□ -0.45
VPS41-208ENST00000448833 NPM1P06748 294 aaKnown RBP eCLIP12.21□□□□□ -0.45
VPS41-208ENST00000448833 KIAA0586Q9BVV6 1533 aa12.2□□□□□ -0.46
VPS41-208ENST00000448833 CARMIL1Q5VZK9 1371 aa12.16□□□□□ -0.46
VPS41-208ENST00000448833 CARMIL2Q6F5E8 1435 aa12.13□□□□□ -0.47
VPS41-208ENST00000448833 KIF13AQ9H1H9 1805 aa12.13□□□□□ -0.47
VPS41-208ENST00000448833 MAPKBP1O60336 1514 aa12.1□□□□□ -0.47
VPS41-208ENST00000448833 PTPRGP23470 1445 aa12.09□□□□□ -0.47
VPS41-208ENST00000448833 IQGAP2Q13576 1575 aa12.09□□□□□ -0.47
VPS41-208ENST00000448833 ADCY10Q96PN6 1610 aa12.08□□□□□ -0.48
VPS41-208ENST00000448833 TNIKQ9UKE5 1360 aa12.07□□□□□ -0.48
VPS41-208ENST00000448833 FAM69CQ0P6D2 419 aa12.07□□□□□ -0.48
VPS41-208ENST00000448833 ABCC10Q5T3U5 1492 aa12.07□□□□□ -0.48
VPS41-208ENST00000448833 RAPGEF2Q9Y4G8 1499 aa12.07□□□□□ -0.48
VPS41-208ENST00000448833 DIP2BQ9P265 1576 aa12.02□□□□□ -0.49
VPS41-208ENST00000448833 FAM9AQ8IZU1 332 aaPredicted RBP12.01□□□□□ -0.49
VPS41-208ENST00000448833 UHRF1BP1LA0JNW5 1464 aa12□□□□□ -0.49
VPS41-208ENST00000448833 ABCC2Q92887 1545 aa12□□□□□ -0.49
VPS41-208ENST00000448833 UGGT2Q9NYU1 1516 aa12□□□□□ -0.49
VPS41-208ENST00000448833 CTTNBP2Q8WZ74 1663 aa12□□□□□ -0.49
VPS41-208ENST00000448833 TTBK1Q5TCY1 1321 aaPredicted RBP11.99□□□□□ -0.49
VPS41-208ENST00000448833 PLB1Q6P1J6 1458 aa11.99□□□□□ -0.49
VPS41-208ENST00000448833 TSPOAP1O95153 1857 aa11.99□□□□□ -0.49
VPS41-208ENST00000448833 UACAQ9BZF9 1416 aa11.98□□□□□ -0.49
VPS41-208ENST00000448833 DISP1Q96F81 1524 aa11.97□□□□□ -0.49
VPS41-208ENST00000448833 GOLGA3Q08378 1498 aa11.97□□□□□ -0.49
VPS41-208ENST00000448833 KIAA0556O60303 1618 aa11.95□□□□□ -0.5
VPS41-208ENST00000448833 KDM6BO15054 1643 aa11.94□□□□□ -0.5
VPS41-208ENST00000448833 GLI2P10070 1586 aa11.94□□□□□ -0.5
VPS41-208ENST00000448833 ASXL2Q76L83 1435 aa11.94□□□□□ -0.5
VPS41-208ENST00000448833 KDM5BQ9UGL1 1544 aa11.93□□□□□ -0.5
VPS41-208ENST00000448833 PRXQ9BXM0 1461 aa11.92□□□□□ -0.5
VPS41-208ENST00000448833 ZCCHC11Q5TAX3 1644 aaKnown RBP11.9□□□□□ -0.5
VPS41-208ENST00000448833 CSRNP3Q8WYN3 585 aa11.89□□□□□ -0.51
VPS41-208ENST00000448833 EEA1Q15075 1411 aa11.88□□□□□ -0.51
VPS41-208ENST00000448833 TEX14Q8IWB6 1497 aa11.88□□□□□ -0.51
VPS41-208ENST00000448833 EPRSP07814 1512 aaKnown RBP11.86□□□□□ -0.51
VPS41-208ENST00000448833 MAP3K4Q9Y6R4 1608 aa11.86□□□□□ -0.51
VPS41-208ENST00000448833 PPRC1Q5VV67 1664 aaKnown RBP11.84□□□□□ -0.51
VPS41-208ENST00000448833 WDR7Q9Y4E6 1490 aa11.84□□□□□ -0.51
VPS41-208ENST00000448833 ABCA8O94911 1581 aa11.84□□□□□ -0.51
VPS41-208ENST00000448833 CFAP43Q8NDM7 1665 aa11.82□□□□□ -0.52
VPS41-208ENST00000448833 KCNH8Q96L42 1107 aa11.79□□□□□ -0.52
VPS41-208ENST00000448833 CD109Q6YHK3 1445 aa11.78□□□□□ -0.52
VPS41-208ENST00000448833 SAMD9Q5K651 1589 aa11.78□□□□□ -0.52
VPS41-208ENST00000448833 MAGI3Q5TCQ9 1506 aa11.77□□□□□ -0.52
VPS41-208ENST00000448833 P3H3Q8IVL6 736 aa11.76□□□□□ -0.53
VPS41-208ENST00000448833 KDM4FA0A1W2PPD8 638 aa11.75□□□□□ -0.53
VPS41-208ENST00000448833 PHLDB1Q86UU1 1377 aa11.75□□□□□ -0.53
VPS41-208ENST00000448833 RAPGEF6Q8TEU7 1601 aa11.75□□□□□ -0.53
VPS41-208ENST00000448833 ATP10BO94823 1461 aa11.74□□□□□ -0.53
VPS41-208ENST00000448833 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.73□□□□□ -0.53
VPS41-208ENST00000448833 KIF21BO75037 1637 aa11.73□□□□□ -0.53
VPS41-208ENST00000448833 HNRNPUL2Q1KMD3 747 aaKnown RBP11.73□□□□□ -0.53
VPS41-208ENST00000448833 PIAS4Q8N2W9 510 aaPredicted RBP11.73□□□□□ -0.53
VPS41-208ENST00000448833 EFCAB5A4FU69 1503 aa11.71□□□□□ -0.53
VPS41-208ENST00000448833 COL17A1Q9UMD9 1497 aaPredicted RBP11.71□□□□□ -0.53
VPS41-208ENST00000448833 ABCA9Q8IUA7 1624 aa11.71□□□□□ -0.54
VPS41-208ENST00000448833 PLEKHD1A6NEE1 506 aa11.69□□□□□ -0.54
VPS41-208ENST00000448833 ARAP3Q8WWN8 1544 aa11.69□□□□□ -0.54
VPS41-208ENST00000448833 ARID3CA6NKF2 412 aa11.68□□□□□ -0.54
VPS41-208ENST00000448833 RANGAP1P46060 587 aaPredicted RBP11.68□□□□□ -0.54
VPS41-208ENST00000448833 ADGRL1O94910 1474 aa11.68□□□□□ -0.54
VPS41-208ENST00000448833 UBTFP17480 764 aaKnown RBP11.67□□□□□ -0.54
VPS41-208ENST00000448833 NEO1Q92859 1461 aa11.66□□□□□ -0.54
VPS41-208ENST00000448833 NUP153P49790 1475 aaKnown RBP11.65□□□□□ -0.54
VPS41-208ENST00000448833 FHOD3Q2V2M9 1422 aa11.65□□□□□ -0.54
VPS41-208ENST00000448833 ADRA2BP18089 450 aa11.64□□□□□ -0.55
VPS41-208ENST00000448833 CFAP74Q9C0B2 1584 aa11.62□□□□□ -0.55
VPS41-208ENST00000448833 FMN1Q68DA7 1419 aa11.62□□□□□ -0.55
VPS41-208ENST00000448833 CDK11AQ9UQ88 783 aaPredicted RBP11.62□□□□□ -0.55
VPS41-208ENST00000448833 PPP6R1Q9UPN7 881 aa11.61□□□□□ -0.55
VPS41-208ENST00000448833 HECW1Q76N89 1606 aa11.57□□□□□ -0.56
VPS41-208ENST00000448833 RAPGEF3O95398 923 aa11.57□□□□□ -0.56
VPS41-208ENST00000448833 ATP1B4Q9UN42 357 aaPredicted RBP11.57□□□□□ -0.56
VPS41-208ENST00000448833 FANCAO15360 1455 aa11.57□□□□□ -0.56
VPS41-208ENST00000448833 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.56□□□□□ -0.56
VPS41-208ENST00000448833 AKNAQ7Z591 1439 aa11.56□□□□□ -0.56
VPS41-208ENST00000448833 DENND4BO75064 1496 aaPredicted RBP11.56□□□□□ -0.56
VPS41-208ENST00000448833 RICTORQ6R327 1708 aa11.55□□□□□ -0.56
VPS41-208ENST00000448833 MYO5CQ9NQX4 1742 aa11.54□□□□□ -0.56
VPS41-208ENST00000448833 ARHGAP35Q9NRY4 1499 aa11.53□□□□□ -0.56
VPS41-208ENST00000448833 EHMT2Q96KQ7 1210 aa11.53□□□□□ -0.56
VPS41-208ENST00000448833 ARID4BQ4LE39 1312 aaPredicted RBP11.53□□□□□ -0.56
VPS41-208ENST00000448833 CLIP1P30622 1438 aa11.52□□□□□ -0.56
VPS41-208ENST00000448833 MAGI2Q86UL8 1455 aa11.52□□□□□ -0.56
VPS41-208ENST00000448833 CDK13Q14004 1512 aaKnown RBP11.52□□□□□ -0.57
VPS41-208ENST00000448833 EFCAB2Q5VUJ9 269 aa11.52□□□□□ -0.57
VPS41-208ENST00000448833 ADAMTSL3P82987 1691 aa11.52□□□□□ -0.57
VPS41-208ENST00000448833 PLCH2O75038 1416 aa11.52□□□□□ -0.57
VPS41-208ENST00000448833 POGZQ7Z3K3 1410 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms