RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 JPH4Q96JJ6 628 aa21.69■■□□□ 1.06
PRPF40A-203ENST00000448428 PRG4Q92954 1404 aaPredicted RBP21.63■■□□□ 1.05
PRPF40A-203ENST00000448428 KIAA0586Q9BVV6 1533 aa21.63■■□□□ 1.05
PRPF40A-203ENST00000448428 RAPGEF2Q9Y4G8 1499 aa21.56■■□□□ 1.04
PRPF40A-203ENST00000448428 TRHP20396 242 aaPredicted RBP21.5■■□□□ 1.03
PRPF40A-203ENST00000448428 IQGAP2Q13576 1575 aa21.47■■□□□ 1.03
PRPF40A-203ENST00000448428 PRXQ9BXM0 1461 aa21.45■■□□□ 1.02
PRPF40A-203ENST00000448428 CHIC1Q5VXU3 224 aa21.42■■□□□ 1.02
PRPF40A-203ENST00000448428 CSRNP3Q8WYN3 585 aa21.42■■□□□ 1.02
PRPF40A-203ENST00000448428 CARMIL2Q6F5E8 1435 aa21.38■■□□□ 1.01
PRPF40A-203ENST00000448428 CTTNBP2Q8WZ74 1663 aa21.37■■□□□ 1.01
PRPF40A-203ENST00000448428 UGGT2Q9NYU1 1516 aa21.36■■□□□ 1.01
PRPF40A-203ENST00000448428 PTPRGP23470 1445 aa21.36■■□□□ 1.01
PRPF40A-203ENST00000448428 DISP1Q96F81 1524 aa21.35■■□□□ 1.01
PRPF40A-203ENST00000448428 TTBK1Q5TCY1 1321 aaPredicted RBP21.35■■□□□ 1.01
PRPF40A-203ENST00000448428 EEA1Q15075 1411 aa21.35■■□□□ 1.01
PRPF40A-203ENST00000448428 TNIKQ9UKE5 1360 aa21.35■■□□□ 1.01
PRPF40A-203ENST00000448428 FAM9AQ8IZU1 332 aaPredicted RBP21.34■■□□□ 1.01
PRPF40A-203ENST00000448428 ADCY10Q96PN6 1610 aa21.33■■□□□ 1
PRPF40A-203ENST00000448428 NPM1P06748 294 aaKnown RBP eCLIP21.3■■□□□ 1
PRPF40A-203ENST00000448428 KIAA0556O60303 1618 aa21.26■□□□□ 0.99
PRPF40A-203ENST00000448428 GOLGA3Q08378 1498 aa21.21■□□□□ 0.99
PRPF40A-203ENST00000448428 KIF13AQ9H1H9 1805 aa21.2■□□□□ 0.98
PRPF40A-203ENST00000448428 UACAQ9BZF9 1416 aa21.2■□□□□ 0.98
PRPF40A-203ENST00000448428 MAPKBP1O60336 1514 aa21.19■□□□□ 0.98
PRPF40A-203ENST00000448428 UHRF1BP1LA0JNW5 1464 aa21.18■□□□□ 0.98
PRPF40A-203ENST00000448428 ABCC2Q92887 1545 aa21.17■□□□□ 0.98
PRPF40A-203ENST00000448428 KIF21BO75037 1637 aa21.16■□□□□ 0.98
PRPF40A-203ENST00000448428 ABCC10Q5T3U5 1492 aa21.14■□□□□ 0.98
PRPF40A-203ENST00000448428 FAM69CQ0P6D2 419 aa21.14■□□□□ 0.97
PRPF40A-203ENST00000448428 P3H3Q8IVL6 736 aa21.13■□□□□ 0.97
PRPF40A-203ENST00000448428 PLB1Q6P1J6 1458 aa21.1■□□□□ 0.97
PRPF40A-203ENST00000448428 EHMT2Q96KQ7 1210 aa21.09■□□□□ 0.97
PRPF40A-203ENST00000448428 DIP2BQ9P265 1576 aa21.09■□□□□ 0.97
PRPF40A-203ENST00000448428 KDM5BQ9UGL1 1544 aa21.09■□□□□ 0.97
PRPF40A-203ENST00000448428 RANGAP1P46060 587 aaPredicted RBP21.08■□□□□ 0.97
PRPF40A-203ENST00000448428 SAMD9Q5K651 1589 aa21.08■□□□□ 0.97
PRPF40A-203ENST00000448428 ABCA8O94911 1581 aa21.06■□□□□ 0.96
PRPF40A-203ENST00000448428 ASXL2Q76L83 1435 aa21.06■□□□□ 0.96
PRPF40A-203ENST00000448428 ZCCHC11Q5TAX3 1644 aaKnown RBP21.05■□□□□ 0.96
PRPF40A-203ENST00000448428 UBTFP17480 764 aaKnown RBP21.04■□□□□ 0.96
PRPF40A-203ENST00000448428 TSPOAP1O95153 1857 aa20.99■□□□□ 0.95
PRPF40A-203ENST00000448428 FHOD3Q2V2M9 1422 aa20.95■□□□□ 0.95
PRPF40A-203ENST00000448428 GLI2P10070 1586 aa20.95■□□□□ 0.94
PRPF40A-203ENST00000448428 EPRSP07814 1512 aaKnown RBP20.94■□□□□ 0.94
PRPF40A-203ENST00000448428 ARID3CA6NKF2 412 aa20.93■□□□□ 0.94
PRPF40A-203ENST00000448428 EFCAB5A4FU69 1503 aa20.93■□□□□ 0.94
PRPF40A-203ENST00000448428 RAPGEF6Q8TEU7 1601 aa20.92■□□□□ 0.94
PRPF40A-203ENST00000448428 ATP10BO94823 1461 aa20.91■□□□□ 0.94
PRPF40A-203ENST00000448428 WDR7Q9Y4E6 1490 aa20.91■□□□□ 0.94
PRPF40A-203ENST00000448428 KCNH8Q96L42 1107 aa20.88■□□□□ 0.93
PRPF40A-203ENST00000448428 PPRC1Q5VV67 1664 aaKnown RBP20.87■□□□□ 0.93
PRPF40A-203ENST00000448428 MAP3K4Q9Y6R4 1608 aa20.86■□□□□ 0.93
PRPF40A-203ENST00000448428 NUP153P49790 1475 aaKnown RBP20.84■□□□□ 0.93
PRPF40A-203ENST00000448428 ARHGAP35Q9NRY4 1499 aa20.84■□□□□ 0.93
PRPF40A-203ENST00000448428 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.82■□□□□ 0.92
PRPF40A-203ENST00000448428 HNRNPUL2Q1KMD3 747 aaKnown RBP20.82■□□□□ 0.92
PRPF40A-203ENST00000448428 KDM6BO15054 1643 aa20.8■□□□□ 0.92
PRPF40A-203ENST00000448428 CFAP43Q8NDM7 1665 aa20.77■□□□□ 0.92
PRPF40A-203ENST00000448428 CD109Q6YHK3 1445 aa20.76■□□□□ 0.91
PRPF40A-203ENST00000448428 FMN1Q68DA7 1419 aa20.75■□□□□ 0.91
PRPF40A-203ENST00000448428 TEX14Q8IWB6 1497 aa20.74■□□□□ 0.91
PRPF40A-203ENST00000448428 PLEKHD1A6NEE1 506 aa20.72■□□□□ 0.91
PRPF40A-203ENST00000448428 ATP1B4Q9UN42 357 aaPredicted RBP20.72■□□□□ 0.91
PRPF40A-203ENST00000448428 MAGI3Q5TCQ9 1506 aa20.71■□□□□ 0.91
PRPF40A-203ENST00000448428 COL17A1Q9UMD9 1497 aaPredicted RBP20.7■□□□□ 0.9
PRPF40A-203ENST00000448428 ABCA9Q8IUA7 1624 aa20.69■□□□□ 0.9
PRPF40A-203ENST00000448428 CDK13Q14004 1512 aaKnown RBP20.68■□□□□ 0.9
PRPF40A-203ENST00000448428 HECW1Q76N89 1606 aa20.67■□□□□ 0.9
PRPF40A-203ENST00000448428 CLIP1P30622 1438 aa20.65■□□□□ 0.9
PRPF40A-203ENST00000448428 LRRIQ1Q96JM4 1722 aa20.62■□□□□ 0.89
PRPF40A-203ENST00000448428 LOC105371045A0A1W2PR82 267 aa20.59■□□□□ 0.89
PRPF40A-203ENST00000448428 CASKIN1Q8WXD9 1431 aa20.59■□□□□ 0.89
PRPF40A-203ENST00000448428 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.58■□□□□ 0.888e-8■■□□□ 12
PRPF40A-203ENST00000448428 PCF11O94913 1555 aaKnown RBP20.57■□□□□ 0.88
PRPF40A-203ENST00000448428 CDK11AQ9UQ88 783 aaPredicted RBP20.57■□□□□ 0.88
PRPF40A-203ENST00000448428 ARAP3Q8WWN8 1544 aa20.55■□□□□ 0.88
PRPF40A-203ENST00000448428 PHLDB1Q86UU1 1377 aa20.54■□□□□ 0.88
PRPF40A-203ENST00000448428 TTC37Q6PGP7 1564 aa20.54■□□□□ 0.88
PRPF40A-203ENST00000448428 NEO1Q92859 1461 aa20.53■□□□□ 0.88
PRPF40A-203ENST00000448428 AEBP2Q6ZN18 517 aaPredicted RBP20.52■□□□□ 0.88
PRPF40A-203ENST00000448428 CEP162Q5TB80 1403 aa20.52■□□□□ 0.87
PRPF40A-203ENST00000448428 FYCO1Q9BQS8 1478 aa20.5■□□□□ 0.87
PRPF40A-203ENST00000448428 TROQ12816 1431 aaPredicted RBP20.5■□□□□ 0.87
PRPF40A-203ENST00000448428 CCDC18Q5T9S5 1454 aa20.5■□□□□ 0.87
PRPF40A-203ENST00000448428 KIF14Q15058 1648 aa20.49■□□□□ 0.87
PRPF40A-203ENST00000448428 RAPGEF3O95398 923 aa20.48■□□□□ 0.87
PRPF40A-203ENST00000448428 FANCAO15360 1455 aa20.47■□□□□ 0.87
PRPF40A-203ENST00000448428 KDM4FA0A1W2PPD8 638 aa20.46■□□□□ 0.87
PRPF40A-203ENST00000448428 PLCH2O75038 1416 aa20.45■□□□□ 0.86
PRPF40A-203ENST00000448428 AKNAQ7Z591 1439 aa20.45■□□□□ 0.86
PRPF40A-203ENST00000448428 MYO5CQ9NQX4 1742 aa20.44■□□□□ 0.86
PRPF40A-203ENST00000448428 CFAP74Q9C0B2 1584 aa20.43■□□□□ 0.86
PRPF40A-203ENST00000448428 FRMPD1Q5SYB0 1578 aa20.4■□□□□ 0.86
PRPF40A-203ENST00000448428 EFCAB2Q5VUJ9 269 aa20.4■□□□□ 0.86
PRPF40A-203ENST00000448428 DENND4BO75064 1496 aaPredicted RBP20.39■□□□□ 0.85
PRPF40A-203ENST00000448428 RICTORQ6R327 1708 aa20.38■□□□□ 0.85
PRPF40A-203ENST00000448428 ADGRL1O94910 1474 aa20.36■□□□□ 0.85
PRPF40A-203ENST00000448428 CDC42BPBQ9Y5S2 1711 aa20.36■□□□□ 0.85
PRPF40A-203ENST00000448428 SCAPERQ9BY12 1400 aa20.35■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms