RNA–Protein interactions for RNA: ENST00000443727.1

LRCH3-208, Transcript of leucine rich repeats and calponin homology domain containing 3, human

TSL 4

Gene LRCH3, Length 611 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LRCH3-208	ENST00000443727	PRG4	Q92954	1404 aa	Predicted RBP	34.35	■■■■□ 3.09
LRCH3-208	ENST00000443727	CARMIL1	Q5VZK9	1371 aa		34.33	■■■■□ 3.09
LRCH3-208	ENST00000443727	RUSC2	Q8N2Y8	1516 aa		34.32	■■■■□ 3.08
LRCH3-208	ENST00000443727	KIAA0586	Q9BVV6	1533 aa		34.25	■■■■□ 3.07
LRCH3-208	ENST00000443727	RAPGEF2	Q9Y4G8	1499 aa		34.05	■■■■□ 3.04
LRCH3-208	ENST00000443727	IQGAP2	Q13576	1575 aa		33.98	■■■■□ 3.03
LRCH3-208	ENST00000443727	CARMIL2	Q6F5E8	1435 aa		33.96	■■■■□ 3.03
LRCH3-208	ENST00000443727	NPM1	P06748	294 aa	Known RBP eCLIP	33.95	■■■■□ 3.03
LRCH3-208	ENST00000443727	TTBK1	Q5TCY1	1321 aa	Predicted RBP	33.93	■■■■□ 3.02
LRCH3-208	ENST00000443727	PTPRG	P23470	1445 aa		33.89	■■■■□ 3.02
LRCH3-208	ENST00000443727	TNIK	Q9UKE5	1360 aa		33.85	■■■■□ 3.01
LRCH3-208	ENST00000443727	ADCY10	Q96PN6	1610 aa		33.82	■■■■□ 3
LRCH3-208	ENST00000443727	PRX	Q9BXM0	1461 aa		33.77	■■■■□ 3
LRCH3-208	ENST00000443727	DISP1	Q96F81	1524 aa		33.75	■■■□□ 2.99
LRCH3-208	ENST00000443727	UGGT2	Q9NYU1	1516 aa		33.75	■■■□□ 2.99
LRCH3-208	ENST00000443727	CSRNP3	Q8WYN3	585 aa		33.72	■■■□□ 2.99
LRCH3-208	ENST00000443727	MAPKBP1	O60336	1514 aa		33.69	■■■□□ 2.98
LRCH3-208	ENST00000443727	CTTNBP2	Q8WZ74	1663 aa		33.68	■■■□□ 2.98
LRCH3-208	ENST00000443727	FAM69C	Q0P6D2	419 aa		33.68	■■■□□ 2.98
LRCH3-208	ENST00000443727	KIAA0556	O60303	1618 aa		33.64	■■■□□ 2.98
LRCH3-208	ENST00000443727	ABCC10	Q5T3U5	1492 aa		33.63	■■■□□ 2.97
LRCH3-208	ENST00000443727	KIF13A	Q9H1H9	1805 aa		33.63	■■■□□ 2.97
LRCH3-208	ENST00000443727	EEA1	Q15075	1411 aa		33.62	■■■□□ 2.97
LRCH3-208	ENST00000443727	UACA	Q9BZF9	1416 aa		33.62	■■■□□ 2.97
LRCH3-208	ENST00000443727	ABCC2	Q92887	1545 aa		33.6	■■■□□ 2.97
LRCH3-208	ENST00000443727	GOLGA3	Q08378	1498 aa		33.6	■■■□□ 2.97
LRCH3-208	ENST00000443727	FAM9A	Q8IZU1	332 aa	Predicted RBP	33.58	■■■□□ 2.97
LRCH3-208	ENST00000443727	UHRF1BP1L	A0JNW5	1464 aa		33.57	■■■□□ 2.97
LRCH3-208	ENST00000443727	DIP2B	Q9P265	1576 aa		33.53	■■■□□ 2.96
LRCH3-208	ENST00000443727	CHIC1	Q5VXU3	224 aa		33.48	■■■□□ 2.95
LRCH3-208	ENST00000443727	ASXL2	Q76L83	1435 aa		33.46	■■■□□ 2.95
LRCH3-208	ENST00000443727	PLB1	Q6P1J6	1458 aa		33.44	■■■□□ 2.94
LRCH3-208	ENST00000443727	KDM5B	Q9UGL1	1544 aa		33.41	■■■□□ 2.94
LRCH3-208	ENST00000443727	P3H3	Q8IVL6	736 aa		33.4	■■■□□ 2.94
LRCH3-208	ENST00000443727	RANGAP1	P46060	587 aa	Predicted RBP	33.34	■■■□□ 2.93
LRCH3-208	ENST00000443727	ZCCHC11	Q5TAX3	1644 aa	Known RBP	33.34	■■■□□ 2.93
LRCH3-208	ENST00000443727	TSPOAP1	O95153	1857 aa		33.3	■■■□□ 2.92
LRCH3-208	ENST00000443727	ABCA8	O94911	1581 aa		33.29	■■■□□ 2.92
LRCH3-208	ENST00000443727	KIF21B	O75037	1637 aa		33.26	■■■□□ 2.91
LRCH3-208	ENST00000443727	GLI2	P10070	1586 aa		33.26	■■■□□ 2.91
LRCH3-208	ENST00000443727	EPRS	P07814	1512 aa	Known RBP	33.23	■■■□□ 2.91
LRCH3-208	ENST00000443727	SAMD9	Q5K651	1589 aa		33.23	■■■□□ 2.91
LRCH3-208	ENST00000443727	EHMT2	Q96KQ7	1210 aa		33.23	■■■□□ 2.91
LRCH3-208	ENST00000443727	WDR7	Q9Y4E6	1490 aa		33.2	■■■□□ 2.91
LRCH3-208	ENST00000443727	ARID3C	A6NKF2	412 aa		33.18	■■■□□ 2.9
LRCH3-208	ENST00000443727	KDM6B	O15054	1643 aa		33.17	■■■□□ 2.9
LRCH3-208	ENST00000443727	UBTF	P17480	764 aa	Known RBP	33.16	■■■□□ 2.9
LRCH3-208	ENST00000443727	KCNH8	Q96L42	1107 aa		33.14	■■■□□ 2.9
LRCH3-208	ENST00000443727	FHOD3	Q2V2M9	1422 aa		33.11	■■■□□ 2.89
LRCH3-208	ENST00000443727	AEBP2	Q6ZN18	517 aa	Predicted RBP	33.09	■■■□□ 2.89
LRCH3-208	ENST00000443727	MAP3K4	Q9Y6R4	1608 aa		33.07	■■■□□ 2.88
LRCH3-208	ENST00000443727	PPRC1	Q5VV67	1664 aa	Known RBP	33.06	■■■□□ 2.88
LRCH3-208	ENST00000443727	ATP10B	O94823	1461 aa		33.05	■■■□□ 2.88
LRCH3-208	ENST00000443727	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	33.05	■■■□□ 2.88
LRCH3-208	ENST00000443727	HNRNPUL2	Q1KMD3	747 aa	Known RBP	33.05	■■■□□ 2.88
LRCH3-208	ENST00000443727	RAPGEF6	Q8TEU7	1601 aa		33.05	■■■□□ 2.88
LRCH3-208	ENST00000443727	TEX14	Q8IWB6	1497 aa		33.05	■■■□□ 2.88
LRCH3-208	ENST00000443727	EFCAB5	A4FU69	1503 aa		33.03	■■■□□ 2.88
LRCH3-208	ENST00000443727	CD109	Q6YHK3	1445 aa		32.98	■■■□□ 2.87
LRCH3-208	ENST00000443727	NUP153	P49790	1475 aa	Known RBP	32.93	■■■□□ 2.86
LRCH3-208	ENST00000443727	CFAP43	Q8NDM7	1665 aa		32.91	■■■□□ 2.86
LRCH3-208	ENST00000443727	MAGI3	Q5TCQ9	1506 aa		32.88	■■■□□ 2.85
LRCH3-208	ENST00000443727	COL17A1	Q9UMD9	1497 aa	Predicted RBP	32.86	■■■□□ 2.85
LRCH3-208	ENST00000443727	PLEKHD1	A6NEE1	506 aa		32.82	■■■□□ 2.84
LRCH3-208	ENST00000443727	ARHGAP35	Q9NRY4	1499 aa		32.8	■■■□□ 2.84
LRCH3-208	ENST00000443727	ATP1B4	Q9UN42	357 aa	Predicted RBP	32.8	■■■□□ 2.84
LRCH3-208	ENST00000443727	FMN1	Q68DA7	1419 aa		32.78	■■■□□ 2.84
LRCH3-208	ENST00000443727	ABCA9	Q8IUA7	1624 aa		32.75	■■■□□ 2.83
LRCH3-208	ENST00000443727	CDK13	Q14004	1512 aa	Known RBP	32.67	■■■□□ 2.82
LRCH3-208	ENST00000443727	HECW1	Q76N89	1606 aa		32.65	■■■□□ 2.82
LRCH3-208	ENST00000443727	KDM4F	A0A1W2PPD8	638 aa		32.64	■■■□□ 2.82
LRCH3-208	ENST00000443727	PHLDB1	Q86UU1	1377 aa		32.64	■■■□□ 2.82
LRCH3-208	ENST00000443727	ARAP3	Q8WWN8	1544 aa		32.61	■■■□□ 2.81
LRCH3-208	ENST00000443727	CDK11A	Q9UQ88	783 aa	Predicted RBP	32.6	■■■□□ 2.81
LRCH3-208	ENST00000443727	NEO1	Q92859	1461 aa		32.58	■■■□□ 2.81
LRCH3-208	ENST00000443727	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	32.54	■■■□□ 2.8	1e-6	■■■■□ 23.9
LRCH3-208	ENST00000443727	CLIP1	P30622	1438 aa		32.51	■■■□□ 2.8
LRCH3-208	ENST00000443727	RAPGEF3	O95398	923 aa		32.51	■■■□□ 2.79
LRCH3-208	ENST00000443727	ADGRL1	O94910	1474 aa		32.5	■■■□□ 2.79
LRCH3-208	ENST00000443727	TTC37	Q6PGP7	1564 aa		32.49	■■■□□ 2.79
LRCH3-208	ENST00000443727	FANCA	O15360	1455 aa		32.46	■■■□□ 2.79
LRCH3-208	ENST00000443727	CASKIN1	Q8WXD9	1431 aa		32.45	■■■□□ 2.79
LRCH3-208	ENST00000443727	AKNA	Q7Z591	1439 aa		32.43	■■■□□ 2.78
LRCH3-208	ENST00000443727	PCF11	O94913	1555 aa	Known RBP	32.41	■■■□□ 2.78
LRCH3-208	ENST00000443727	CFAP74	Q9C0B2	1584 aa		32.41	■■■□□ 2.78
LRCH3-208	ENST00000443727	TRO	Q12816	1431 aa	Predicted RBP	32.41	■■■□□ 2.78
LRCH3-208	ENST00000443727	DENND4B	O75064	1496 aa	Predicted RBP	32.38	■■■□□ 2.77
LRCH3-208	ENST00000443727	CCDC18	Q5T9S5	1454 aa		32.38	■■■□□ 2.77
LRCH3-208	ENST00000443727	PLCH2	O75038	1416 aa		32.37	■■■□□ 2.77
LRCH3-208	ENST00000443727	KIF14	Q15058	1648 aa		32.36	■■■□□ 2.77
LRCH3-208	ENST00000443727	LRRIQ1	Q96JM4	1722 aa		32.35	■■■□□ 2.77
LRCH3-208	ENST00000443727	FYCO1	Q9BQS8	1478 aa		32.35	■■■□□ 2.77
LRCH3-208	ENST00000443727	FRMPD1	Q5SYB0	1578 aa		32.32	■■■□□ 2.77
LRCH3-208	ENST00000443727	EFCAB2	Q5VUJ9	269 aa		32.32	■■■□□ 2.76
LRCH3-208	ENST00000443727	MYO5C	Q9NQX4	1742 aa		32.28	■■■□□ 2.76
LRCH3-208	ENST00000443727	SCAPER	Q9BY12	1400 aa		32.26	■■■□□ 2.75
LRCH3-208	ENST00000443727	ARID4B	Q4LE39	1312 aa	Predicted RBP	32.25	■■■□□ 2.75
LRCH3-208	ENST00000443727	RICTOR	Q6R327	1708 aa		32.24	■■■□□ 2.75
LRCH3-208	ENST00000443727	CEP162	Q5TB80	1403 aa		32.24	■■■□□ 2.75
LRCH3-208	ENST00000443727	ARHGAP5	Q13017	1502 aa		32.22	■■■□□ 2.75

Retrieved 100 of 20,778 RNA–protein pairs in 87.5 ms