RNA–Protein interactions for RNA: ENST00000443197.5

CALD1-210, Transcript of caldesmon 1, humanhuman

TSL 5

Gene CALD1, Length 4,173 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CALD1-210ENST00000443197 FHOD3Q2V2M9 1422 aa15.06■□□□□ 0
CALD1-210ENST00000443197 PELP1Q8IZL8 1130 aaKnown RBP15.04■□□□□ -0
CALD1-210ENST00000443197 CUX1P39880 1505 aa15.04■□□□□ -0
CALD1-210ENST00000443197 FHAD1B1AJZ9 1412 aa15.03■□□□□ -0
CALD1-210ENST00000443197 SIN3AQ96ST3 1273 aa15.03■□□□□ -0
CALD1-210ENST00000443197 KCNH8Q96L42 1107 aa15.02■□□□□ -0
CALD1-210ENST00000443197 PEG3Q9GZU2 1588 aa15.02□□□□□ -0.01
CALD1-210ENST00000443197 TONSLQ96HA7 1378 aa15.01□□□□□ -0.01
CALD1-210ENST00000443197 DDX10Q13206 875 aaKnown RBP14.99□□□□□ -0.01
CALD1-210ENST00000443197 PLEKHD1A6NEE1 506 aa14.98□□□□□ -0.01
CALD1-210ENST00000443197 TOP2BQ02880 1626 aa14.97□□□□□ -0.01
CALD1-210ENST00000443197 MIER1Q8N108 512 aa14.97□□□□□ -0.01
CALD1-210ENST00000443197 GTF3C3Q9Y5Q9 886 aa14.96□□□□□ -0.01
CALD1-210ENST00000443197 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.95□□□□□ -0.024e-7■■■■□ 20
CALD1-210ENST00000443197 CFDP1Q9UEE9 299 aaPredicted RBP14.95□□□□□ -0.02
CALD1-210ENST00000443197 NEFLP07196 543 aa14.94□□□□□ -0.02
CALD1-210ENST00000443197 TSPY4P0CV99 314 aa14.93□□□□□ -0.02
CALD1-210ENST00000443197 TSPY10P0CW01 314 aa14.93□□□□□ -0.02
CALD1-210ENST00000443197 KIF21BO75037 1637 aa14.93□□□□□ -0.02
CALD1-210ENST00000443197 AQRO60306 1485 aaKnown RBP eCLIP14.93□□□□□ -0.025e-16■■□□□ 11.9
CALD1-210ENST00000443197 ANP32CO43423 234 aa14.92□□□□□ -0.02
CALD1-210ENST00000443197 GAPVD1Q14C86 1478 aa14.91□□□□□ -0.02
CALD1-210ENST00000443197 PRXQ9BXM0 1461 aa14.91□□□□□ -0.02
CALD1-210ENST00000443197 SLC4A1APQ9BWU0 796 aaKnown RBP14.9□□□□□ -0.02
CALD1-210ENST00000443197 ARAP1Q96P48 1450 aa14.9□□□□□ -0.02
CALD1-210ENST00000443197 ACIN1Q9UKV3 1341 aaKnown RBP14.89□□□□□ -0.03
CALD1-210ENST00000443197 FMN1Q68DA7 1419 aa14.88□□□□□ -0.03
CALD1-210ENST00000443197 POLA1P09884 1462 aaPredicted RBP14.88□□□□□ -0.03
CALD1-210ENST00000443197 TOPBP1Q92547 1522 aa14.88□□□□□ -0.03
CALD1-210ENST00000443197 RAB3GAP2Q9H2M9 1393 aa14.86□□□□□ -0.03
CALD1-210ENST00000443197 ARHGAP35Q9NRY4 1499 aa14.86□□□□□ -0.03
CALD1-210ENST00000443197 KDM2AQ9Y2K7 1162 aa14.86□□□□□ -0.03
CALD1-210ENST00000443197 NPM1P06748 294 aaKnown RBP eCLIP14.85□□□□□ -0.03
CALD1-210ENST00000443197 JPH4Q96JJ6 628 aa14.85□□□□□ -0.03
CALD1-210ENST00000443197 FOXD1Q16676 465 aa14.83□□□□□ -0.04
CALD1-210ENST00000443197 SETD5Q9C0A6 1442 aa14.82□□□□□ -0.04
CALD1-210ENST00000443197 ERICH3Q5RHP9 1530 aa14.79□□□□□ -0.04
CALD1-210ENST00000443197 BCANQ96GW7 911 aa14.79□□□□□ -0.04
CALD1-210ENST00000443197 CLSPNQ9HAW4 1339 aa14.76□□□□□ -0.05
CALD1-210ENST00000443197 PHLDB1Q86UU1 1377 aa14.76□□□□□ -0.05
CALD1-210ENST00000443197 RGL3Q3MIN7 710 aa14.76□□□□□ -0.05
CALD1-210ENST00000443197 CHGAP10645 457 aaKnown RBP14.75□□□□□ -0.05
CALD1-210ENST00000443197 CARMIL2Q6F5E8 1435 aa14.74□□□□□ -0.05
CALD1-210ENST00000443197 DHX57Q6P158 1386 aaKnown RBP14.74□□□□□ -0.05
CALD1-210ENST00000443197 DNMBPQ6XZF7 1577 aa14.73□□□□□ -0.05
CALD1-210ENST00000443197 SENP3Q9H4L4 574 aaPredicted RBP14.71□□□□□ -0.05
CALD1-210ENST00000443197 SCAF1Q9H7N4 1312 aaKnown RBP14.71□□□□□ -0.06
CALD1-210ENST00000443197 URB2Q14146 1524 aaKnown RBP14.69□□□□□ -0.06
CALD1-210ENST00000443197 EIF4G2P78344 907 aaKnown RBP eCLIP14.69□□□□□ -0.06
CALD1-210ENST00000443197 LRRC9Q6ZRR7 1453 aa14.68□□□□□ -0.06
CALD1-210ENST00000443197 ZNF644Q9H582 1327 aaPredicted RBP14.68□□□□□ -0.06
CALD1-210ENST00000443197 MRC2Q9UBG0 1479 aa14.67□□□□□ -0.06
CALD1-210ENST00000443197 ABCA10Q8WWZ4 1543 aa14.67□□□□□ -0.06
CALD1-210ENST00000443197 BIVM-ERCC5R4GMW8 1640 aa14.67□□□□□ -0.06
CALD1-210ENST00000443197 HNRNPMP52272 730 aaKnown RBP eCLIP14.66□□□□□ -0.06
CALD1-210ENST00000443197 FAM9BQ8IZU0 186 aa14.66□□□□□ -0.06
CALD1-210ENST00000443197 GRIN2BQ13224 1484 aa14.66□□□□□ -0.06
CALD1-210ENST00000443197 LAMC3Q9Y6N6 1575 aa14.65□□□□□ -0.06
CALD1-210ENST00000443197 MPHOSPH9Q99550 1183 aa14.65□□□□□ -0.06
CALD1-210ENST00000443197 SENP3-EIF4A1A0A087X0R7 540 aa14.63□□□□□ -0.07
CALD1-210ENST00000443197 HNRNPUQ00839 825 aaKnown RBP eCLIP14.63□□□□□ -0.07
CALD1-210ENST00000443197 PKD2Q13563 968 aa14.62□□□□□ -0.07
CALD1-210ENST00000443197 PLPPR3Q6T4P5 718 aa14.62□□□□□ -0.07
CALD1-210ENST00000443197 CASKIN1Q8WXD9 1431 aa14.62□□□□□ -0.07
CALD1-210ENST00000443197 PPP1R15AO75807 674 aaPredicted RBP14.59□□□□□ -0.07
CALD1-210ENST00000443197 CCDC18Q5T9S5 1454 aa14.59□□□□□ -0.07
CALD1-210ENST00000443197 PTPRGP23470 1445 aa14.59□□□□□ -0.07
CALD1-210ENST00000443197 FGD6Q6ZV73 1430 aa14.58□□□□□ -0.07
CALD1-210ENST00000443197 ZNF608Q9ULD9 1512 aaPredicted RBP14.58□□□□□ -0.08
CALD1-210ENST00000443197 SALL2Q9Y467 1007 aaPredicted RBP14.58□□□□□ -0.08
CALD1-210ENST00000443197 SNAPC4Q5SXM2 1469 aa14.57□□□□□ -0.08
CALD1-210ENST00000443197 IFT140Q96RY7 1462 aa14.56□□□□□ -0.08
CALD1-210ENST00000443197 DCAF11Q8TEB1 546 aa14.56□□□□□ -0.08
CALD1-210ENST00000443197 RRBP1Q9P2E9 1410 aaKnown RBP14.56□□□□□ -0.08
CALD1-210ENST00000443197 MRS2Q9HD23 443 aa14.55□□□□□ -0.08
CALD1-210ENST00000443197 L3MBTL2Q969R5 705 aa14.55□□□□□ -0.08
CALD1-210ENST00000443197 CARD11Q9BXL7 1154 aa14.55□□□□□ -0.08
CALD1-210ENST00000443197 NCOA2Q15596 1464 aa14.55□□□□□ -0.08
CALD1-210ENST00000443197 NUP155O75694 1391 aa14.54□□□□□ -0.08
CALD1-210ENST00000443197 TIMELESSQ9UNS1 1208 aa14.54□□□□□ -0.08
CALD1-210ENST00000443197 MYOM3Q5VTT5 1437 aa14.53□□□□□ -0.08
CALD1-210ENST00000443197 FYCO1Q9BQS8 1478 aa14.53□□□□□ -0.08
CALD1-210ENST00000443197 HSPA5P11021 654 aaKnown RBP14.53□□□□□ -0.08
CALD1-210ENST00000443197 FKBP8Q14318 412 aa14.53□□□□□ -0.08
CALD1-210ENST00000443197 PRDM2Q13029 1718 aa14.52□□□□□ -0.08
CALD1-210ENST00000443197 TIAM1Q13009 1591 aa14.52□□□□□ -0.09
CALD1-210ENST00000443197 STAG3Q9UJ98 1225 aa14.51□□□□□ -0.09
CALD1-210ENST00000443197 ANKRD30AQ9BXX3 1397 aa14.5□□□□□ -0.09
CALD1-210ENST00000443197 EFCAB2Q5VUJ9 269 aa14.49□□□□□ -0.09
CALD1-210ENST00000443197 TMC1Q8TDI8 760 aa14.49□□□□□ -0.09
CALD1-210ENST00000443197 EFCAB5A4FU69 1503 aa14.48□□□□□ -0.09
CALD1-210ENST00000443197 ESF1Q9H501 851 aaKnown RBP14.48□□□□□ -0.09
CALD1-210ENST00000443197 PCF11O94913 1555 aaKnown RBP14.47□□□□□ -0.09
CALD1-210ENST00000443197 IRX6P78412 446 aaPredicted RBP14.46□□□□□ -0.09
CALD1-210ENST00000443197 ERICH6Q7L0X2 663 aa14.46□□□□□ -0.09
CALD1-210ENST00000443197 PRG4Q92954 1404 aaPredicted RBP14.46□□□□□ -0.09
CALD1-210ENST00000443197 CDK13Q14004 1512 aaKnown RBP14.45□□□□□ -0.1
CALD1-210ENST00000443197 GGT6Q6P531 493 aa14.45□□□□□ -0.1
CALD1-210ENST00000443197 CUL7Q14999 1698 aa14.42□□□□□ -0.1
CALD1-210ENST00000443197 KIAA0586Q9BVV6 1533 aa14.41□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms