RNA–Protein interactions for RNA: ENST00000439369.6

SCLT1-202, Transcript of sodium channel and clathrin linker 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCLT1, Length 966 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCLT1-202ENST00000439369 AEBP2Q6ZN18 517 aaPredicted RBP20.59■□□□□ 0.89
SCLT1-202ENST00000439369 UBTFP17480 764 aaKnown RBP20.58■□□□□ 0.89
SCLT1-202ENST00000439369 IQGAP2Q13576 1575 aa20.55■□□□□ 0.88
SCLT1-202ENST00000439369 OSCARQ8IYS5 282 aa20.54■□□□□ 0.88
SCLT1-202ENST00000439369 CLASP1Q7Z460 1538 aa20.53■□□□□ 0.88
SCLT1-202ENST00000439369 LOC105371045A0A1W2PR82 267 aa20.53■□□□□ 0.88
SCLT1-202ENST00000439369 EHMT2Q96KQ7 1210 aa20.49■□□□□ 0.87
SCLT1-202ENST00000439369 UGGT2Q9NYU1 1516 aa20.48■□□□□ 0.87
SCLT1-202ENST00000439369 SHROOM2Q13796 1616 aa20.45■□□□□ 0.87
SCLT1-202ENST00000439369 EFCAB5A4FU69 1503 aa20.43■□□□□ 0.86
SCLT1-202ENST00000439369 JPH4Q96JJ6 628 aa20.41■□□□□ 0.86
SCLT1-202ENST00000439369 CEP162Q5TB80 1403 aa20.4■□□□□ 0.86
SCLT1-202ENST00000439369 SAMD9Q5K651 1589 aa20.38■□□□□ 0.85
SCLT1-202ENST00000439369 CLIP1P30622 1438 aa20.37■□□□□ 0.85
SCLT1-202ENST00000439369 CARMIL2Q6F5E8 1435 aa20.37■□□□□ 0.85
SCLT1-202ENST00000439369 DISP1Q96F81 1524 aa20.34■□□□□ 0.85
SCLT1-202ENST00000439369 PRG4Q92954 1404 aaPredicted RBP20.34■□□□□ 0.85
SCLT1-202ENST00000439369 KIAA0556O60303 1618 aa20.33■□□□□ 0.84
SCLT1-202ENST00000439369 ARHGAP35Q9NRY4 1499 aa20.32■□□□□ 0.84
SCLT1-202ENST00000439369 RANGAP1P46060 587 aaPredicted RBP20.25■□□□□ 0.83
SCLT1-202ENST00000439369 ARAP1Q96P48 1450 aa20.23■□□□□ 0.83
SCLT1-202ENST00000439369 ERCC6L2Q5T890 1561 aa20.21■□□□□ 0.83
SCLT1-202ENST00000439369 FHOD3Q2V2M9 1422 aa20.21■□□□□ 0.83
SCLT1-202ENST00000439369 FMN1Q68DA7 1419 aa20.21■□□□□ 0.83
SCLT1-202ENST00000439369 ARHGEF11O15085 1522 aa20.21■□□□□ 0.83
SCLT1-202ENST00000439369 PTPRGP23470 1445 aa20.18■□□□□ 0.82
SCLT1-202ENST00000439369 P3H3Q8IVL6 736 aa20.17■□□□□ 0.82
SCLT1-202ENST00000439369 VPS8Q8N3P4 1428 aa20.15■□□□□ 0.82
SCLT1-202ENST00000439369 RIMBP3CA6NJZ7 1639 aa20.13■□□□□ 0.81
SCLT1-202ENST00000439369 RIMBP3BA6NNM3 1639 aa20.13■□□□□ 0.81
SCLT1-202ENST00000439369 RIMBP3Q9UFD9 1639 aa20.13■□□□□ 0.81
SCLT1-202ENST00000439369 CASKIN1Q8WXD9 1431 aa20.1■□□□□ 0.81
SCLT1-202ENST00000439369 FYCO1Q9BQS8 1478 aa20.09■□□□□ 0.81
SCLT1-202ENST00000439369 ABCA8O94911 1581 aa20.08■□□□□ 0.81
SCLT1-202ENST00000439369 UHRF1BP1LA0JNW5 1464 aa20.07■□□□□ 0.8
SCLT1-202ENST00000439369 DNAJC5Q9H3Z4 198 aa20.07■□□□□ 0.8
SCLT1-202ENST00000439369 UACAQ9BZF9 1416 aa20.07■□□□□ 0.8
SCLT1-202ENST00000439369 RAPGEF6Q8TEU7 1601 aa20.06■□□□□ 0.8
SCLT1-202ENST00000439369 PCF11O94913 1555 aaKnown RBP20.04■□□□□ 0.8
SCLT1-202ENST00000439369 HECW1Q76N89 1606 aa20.04■□□□□ 0.8
SCLT1-202ENST00000439369 PLB1Q6P1J6 1458 aa20.04■□□□□ 0.8
SCLT1-202ENST00000439369 ABCC2Q92887 1545 aa20.03■□□□□ 0.8
SCLT1-202ENST00000439369 TTBK1Q5TCY1 1321 aaPredicted RBP20■□□□□ 0.79
SCLT1-202ENST00000439369 NUP153P49790 1475 aaKnown RBP19.99■□□□□ 0.79
SCLT1-202ENST00000439369 CCDC18Q5T9S5 1454 aa19.99■□□□□ 0.79
SCLT1-202ENST00000439369 MAP3K1Q13233 1512 aa19.97■□□□□ 0.79
SCLT1-202ENST00000439369 ADCY10Q96PN6 1610 aa19.96■□□□□ 0.79
SCLT1-202ENST00000439369 EPRSP07814 1512 aaKnown RBP19.95■□□□□ 0.78
SCLT1-202ENST00000439369 KDM5BQ9UGL1 1544 aa19.94■□□□□ 0.78
SCLT1-202ENST00000439369 CYB5RLQ6IPT4 315 aa19.93■□□□□ 0.78
SCLT1-202ENST00000439369 ATP10BO94823 1461 aa19.9■□□□□ 0.78
SCLT1-202ENST00000439369 CFAP43Q8NDM7 1665 aa19.9■□□□□ 0.78
SCLT1-202ENST00000439369 APLP2Q06481 763 aa19.89■□□□□ 0.77
SCLT1-202ENST00000439369 TIAM1Q13009 1591 aa19.89■□□□□ 0.77
SCLT1-202ENST00000439369 ATP1B4Q9UN42 357 aaPredicted RBP19.89■□□□□ 0.77
SCLT1-202ENST00000439369 LRRIQ1Q96JM4 1722 aa19.88■□□□□ 0.77
SCLT1-202ENST00000439369 CDK13Q14004 1512 aaKnown RBP19.86■□□□□ 0.77
SCLT1-202ENST00000439369 CDK11AQ9UQ88 783 aaPredicted RBP19.86■□□□□ 0.77
SCLT1-202ENST00000439369 ZCCHC11Q5TAX3 1644 aaKnown RBP19.86■□□□□ 0.77
SCLT1-202ENST00000439369 NPM1P06748 294 aaKnown RBP eCLIP19.85■□□□□ 0.77
SCLT1-202ENST00000439369 MAPKBP1O60336 1514 aa19.8■□□□□ 0.76
SCLT1-202ENST00000439369 LRRC9Q6ZRR7 1453 aa19.79■□□□□ 0.76
SCLT1-202ENST00000439369 EHBP1L1Q8N3D4 1523 aa19.79■□□□□ 0.76
SCLT1-202ENST00000439369 PLEKHD1A6NEE1 506 aa19.78■□□□□ 0.76
SCLT1-202ENST00000439369 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.78■□□□□ 0.76
SCLT1-202ENST00000439369 HNRNPUL2Q1KMD3 747 aaKnown RBP19.78■□□□□ 0.76
SCLT1-202ENST00000439369 TROQ12816 1431 aaPredicted RBP19.77■□□□□ 0.76
SCLT1-202ENST00000439369 MTUS2Q5JR59 1369 aa19.77■□□□□ 0.76
SCLT1-202ENST00000439369 ARID3CA6NKF2 412 aa19.76■□□□□ 0.75
SCLT1-202ENST00000439369 WDR7Q9Y4E6 1490 aa19.75■□□□□ 0.75
SCLT1-202ENST00000439369 ASXL2Q76L83 1435 aa19.75■□□□□ 0.75
SCLT1-202ENST00000439369 MAGI3Q5TCQ9 1506 aa19.74■□□□□ 0.75
SCLT1-202ENST00000439369 KANK4Q5T7N3 995 aaPredicted RBP19.71■□□□□ 0.75
SCLT1-202ENST00000439369 KIF14Q15058 1648 aa19.69■□□□□ 0.74
SCLT1-202ENST00000439369 SUPT6HQ7KZ85 1726 aaKnown RBP19.68■□□□□ 0.74
SCLT1-202ENST00000439369 NCOA2Q15596 1464 aa19.64■□□□□ 0.73
SCLT1-202ENST00000439369 GLI2P10070 1586 aa19.62■□□□□ 0.73
SCLT1-202ENST00000439369 ABCC10Q5T3U5 1492 aa19.62■□□□□ 0.73
SCLT1-202ENST00000439369 ABCA9Q8IUA7 1624 aa19.61■□□□□ 0.73
SCLT1-202ENST00000439369 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.6■□□□□ 0.737e-7■■□□□ 14.3
SCLT1-202ENST00000439369 DIP2BQ9P265 1576 aa19.58■□□□□ 0.73
SCLT1-202ENST00000439369 KCNH8Q96L42 1107 aa19.57■□□□□ 0.72
SCLT1-202ENST00000439369 CCNB3Q8WWL7 1395 aa19.57■□□□□ 0.72
SCLT1-202ENST00000439369 ARAP3Q8WWN8 1544 aa19.56■□□□□ 0.72
SCLT1-202ENST00000439369 TTC37Q6PGP7 1564 aa19.56■□□□□ 0.72
SCLT1-202ENST00000439369 ITSN2Q9NZM3 1697 aa19.56■□□□□ 0.72
SCLT1-202ENST00000439369 MYOM3Q5VTT5 1437 aa19.55■□□□□ 0.72
SCLT1-202ENST00000439369 PHLDB1Q86UU1 1377 aa19.54■□□□□ 0.72
SCLT1-202ENST00000439369 MIA2Q96PC5 1412 aa19.53■□□□□ 0.72
SCLT1-202ENST00000439369 GPATCH8Q9UKJ3 1502 aaKnown RBP19.53■□□□□ 0.72
SCLT1-202ENST00000439369 PPARGC1BQ86YN6 1023 aaKnown RBP19.53■□□□□ 0.72
SCLT1-202ENST00000439369 PREX2Q70Z35 1606 aa19.52■□□□□ 0.72
SCLT1-202ENST00000439369 MYO5CQ9NQX4 1742 aa19.52■□□□□ 0.72
SCLT1-202ENST00000439369 PLCH2O75038 1416 aa19.51■□□□□ 0.71
SCLT1-202ENST00000439369 MAP3K4Q9Y6R4 1608 aa19.51■□□□□ 0.71
SCLT1-202ENST00000439369 CDC42BPAQ5VT25 1732 aa19.51■□□□□ 0.71
SCLT1-202ENST00000439369 CD109Q6YHK3 1445 aa19.5■□□□□ 0.71
SCLT1-202ENST00000439369 FAM69CQ0P6D2 419 aa19.49■□□□□ 0.71
SCLT1-202ENST00000439369 FGD6Q6ZV73 1430 aa19.49■□□□□ 0.71
SCLT1-202ENST00000439369 KIF13AQ9H1H9 1805 aa19.48■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms