RNA–Protein interactions for RNA: ENST00000429440.5

CDC42BPA-206, Transcript of CDC42 binding protein kinase alpha, humanhuman

TSL 2

Gene CDC42BPA, Length 2,501 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42BPA-206ENST00000429440 RSPH6AQ9H0K4 717 aa12.34□□□□□ -0.43
CDC42BPA-206ENST00000429440 ZMYND15Q9H091 742 aa12.31□□□□□ -0.44
CDC42BPA-206ENST00000429440 GOLGA3Q08378 1498 aa12.31□□□□□ -0.44
CDC42BPA-206ENST00000429440 WASHC2AQ641Q2 1341 aa12.31□□□□□ -0.44
CDC42BPA-206ENST00000429440 KIF21BO75037 1637 aa12.3□□□□□ -0.44
CDC42BPA-206ENST00000429440 TOP2BQ02880 1626 aa12.3□□□□□ -0.44
CDC42BPA-206ENST00000429440 WASHC2CQ9Y4E1 1318 aa12.29□□□□□ -0.44
CDC42BPA-206ENST00000429440 BIVM-ERCC5R4GMW8 1640 aa12.29□□□□□ -0.44
CDC42BPA-206ENST00000429440 CEP164Q9UPV0 1460 aa12.26□□□□□ -0.45
CDC42BPA-206ENST00000429440 USP35Q9P2H5 1018 aa12.26□□□□□ -0.45
CDC42BPA-206ENST00000429440 PAK3O75914 559 aaPredicted RBP12.25□□□□□ -0.45
CDC42BPA-206ENST00000429440 UBTFP17480 764 aaKnown RBP12.22□□□□□ -0.45
CDC42BPA-206ENST00000429440 KCNH8Q96L42 1107 aa12.22□□□□□ -0.45
CDC42BPA-206ENST00000429440 VSIG10Q8N0Z9 540 aa12.21□□□□□ -0.45
CDC42BPA-206ENST00000429440 CFTRP13569 1480 aa12.21□□□□□ -0.46
CDC42BPA-206ENST00000429440 RAPGEF2Q9Y4G8 1499 aa12.21□□□□□ -0.46
CDC42BPA-206ENST00000429440 CUX1P39880 1505 aa12.21□□□□□ -0.46
CDC42BPA-206ENST00000429440 IPO9Q96P70 1041 aaKnown RBP12.18□□□□□ -0.46
CDC42BPA-206ENST00000429440 DNAJC5BQ9UF47 199 aa12.18□□□□□ -0.46
CDC42BPA-206ENST00000429440 PRDM2Q13029 1718 aa12.16□□□□□ -0.46
CDC42BPA-206ENST00000429440 PPP4R2Q9NY27 417 aa12.15□□□□□ -0.46
CDC42BPA-206ENST00000429440 TIMELESSQ9UNS1 1208 aa12.15□□□□□ -0.46
CDC42BPA-206ENST00000429440 CLIP1P30622 1438 aa12.14□□□□□ -0.47
CDC42BPA-206ENST00000429440 CCER2I3L3R5 266 aa12.14□□□□□ -0.47
CDC42BPA-206ENST00000429440 ZBTB47Q9UFB7 747 aaPredicted RBP12.14□□□□□ -0.47
CDC42BPA-206ENST00000429440 PRXQ9BXM0 1461 aa12.14□□□□□ -0.47
CDC42BPA-206ENST00000429440 FGD1P98174 961 aa12.13□□□□□ -0.47
CDC42BPA-206ENST00000429440 ANP32AP39687 249 aaKnown RBP12.13□□□□□ -0.47
CDC42BPA-206ENST00000429440 FAM43AQ8N2R8 423 aa12.12□□□□□ -0.47
CDC42BPA-206ENST00000429440 ERICH3Q5RHP9 1530 aa12.12□□□□□ -0.47
CDC42BPA-206ENST00000429440 PDE4CQ08493 712 aa12.11□□□□□ -0.47
CDC42BPA-206ENST00000429440 VPS8Q8N3P4 1428 aa12.11□□□□□ -0.47
CDC42BPA-206ENST00000429440 BRPF3Q9ULD4 1205 aa12.1□□□□□ -0.47
CDC42BPA-206ENST00000429440 AAMPQ13685 434 aa12.09□□□□□ -0.47
CDC42BPA-206ENST00000429440 CC2D2AQ9P2K1 1620 aa12.09□□□□□ -0.47
CDC42BPA-206ENST00000429440 NEFMP07197 916 aa12.07□□□□□ -0.48
CDC42BPA-206ENST00000429440 RRP9O43818 475 aaKnown RBP12.07□□□□□ -0.48
CDC42BPA-206ENST00000429440 RBM10P98175 930 aaKnown RBP12.05□□□□□ -0.48
CDC42BPA-206ENST00000429440 HNRNPUL2Q1KMD3 747 aaKnown RBP12.05□□□□□ -0.48
CDC42BPA-206ENST00000429440 TRIM52Q96A61 297 aa12.05□□□□□ -0.48
CDC42BPA-206ENST00000429440 CADPSQ9ULU8 1353 aa12.05□□□□□ -0.48
CDC42BPA-206ENST00000429440 KIF27Q86VH2 1401 aa12.04□□□□□ -0.48
CDC42BPA-206ENST00000429440 PPM1GO15355 546 aaPredicted RBP12.04□□□□□ -0.48
CDC42BPA-206ENST00000429440 GSE1Q14687 1217 aa12.04□□□□□ -0.48
CDC42BPA-206ENST00000429440 ARAP1Q96P48 1450 aa12.03□□□□□ -0.48
CDC42BPA-206ENST00000429440 DHX57Q6P158 1386 aaKnown RBP12.03□□□□□ -0.48
CDC42BPA-206ENST00000429440 PDIA4P13667 645 aaKnown RBP12.03□□□□□ -0.48
CDC42BPA-206ENST00000429440 HSP90AA2PQ14568 343 aaPredicted RBP12.01□□□□□ -0.49
CDC42BPA-206ENST00000429440 A0A0U1RQG5 324 aaPredicted RBP11.99□□□□□ -0.49
CDC42BPA-206ENST00000429440 FGD5Q6ZNL6 1462 aa11.97□□□□□ -0.49
CDC42BPA-206ENST00000429440 RANGAP1P46060 587 aaPredicted RBP11.97□□□□□ -0.49
CDC42BPA-206ENST00000429440 CUX2O14529 1486 aa11.96□□□□□ -0.49
CDC42BPA-206ENST00000429440 IGF1RP08069 1367 aa11.96□□□□□ -0.5
CDC42BPA-206ENST00000429440 PPP1R15AO75807 674 aaPredicted RBP11.96□□□□□ -0.5
CDC42BPA-206ENST00000429440 IRX6P78412 446 aaPredicted RBP11.95□□□□□ -0.5
CDC42BPA-206ENST00000429440 ARHGAP35Q9NRY4 1499 aa11.95□□□□□ -0.5
CDC42BPA-206ENST00000429440 FANCD2Q9BXW9 1451 aa11.94□□□□□ -0.5
CDC42BPA-206ENST00000429440 ANP32CO43423 234 aa11.94□□□□□ -0.5
CDC42BPA-206ENST00000429440 DDX10Q13206 875 aaKnown RBP11.93□□□□□ -0.5
CDC42BPA-206ENST00000429440 B4GALNT3Q6L9W6 998 aa11.92□□□□□ -0.5
CDC42BPA-206ENST00000429440 HSP90AA1P07900 732 aaKnown RBP11.91□□□□□ -0.5
CDC42BPA-206ENST00000429440 NESP48681 1621 aa11.91□□□□□ -0.5
CDC42BPA-206ENST00000429440 DNMBPQ6XZF7 1577 aa11.9□□□□□ -0.51
CDC42BPA-206ENST00000429440 KANK4Q5T7N3 995 aaPredicted RBP11.89□□□□□ -0.51
CDC42BPA-206ENST00000429440 CENPJQ9HC77 1338 aaPredicted RBP11.89□□□□□ -0.51
CDC42BPA-206ENST00000429440 BCL11BQ9C0K0 894 aaPredicted RBP11.89□□□□□ -0.51
CDC42BPA-206ENST00000429440 FRAT1Q92837 279 aaPredicted RBP11.88□□□□□ -0.51
CDC42BPA-206ENST00000429440 LAS1LQ9Y4W2 734 aaKnown RBP11.88□□□□□ -0.51
CDC42BPA-206ENST00000429440 TOPBP1Q92547 1522 aa11.87□□□□□ -0.51
CDC42BPA-206ENST00000429440 CALD1Q05682 793 aaKnown RBP11.87□□□□□ -0.51
CDC42BPA-206ENST00000429440 TAF7LQ5H9L4 462 aa11.87□□□□□ -0.51
CDC42BPA-206ENST00000429440 CARMIL1Q5VZK9 1371 aa11.87□□□□□ -0.51
CDC42BPA-206ENST00000429440 POLA1P09884 1462 aaPredicted RBP11.86□□□□□ -0.51
CDC42BPA-206ENST00000429440 RAD54L2Q9Y4B4 1467 aa11.85□□□□□ -0.51
CDC42BPA-206ENST00000429440 ABCA10Q8WWZ4 1543 aa11.85□□□□□ -0.51
CDC42BPA-206ENST00000429440 HNRNPUQ00839 825 aaKnown RBP eCLIP11.85□□□□□ -0.51
CDC42BPA-206ENST00000429440 PRDM4Q9UKN5 801 aa11.85□□□□□ -0.51
CDC42BPA-206ENST00000429440 RRBP1Q9P2E9 1410 aaKnown RBP11.84□□□□□ -0.51
CDC42BPA-206ENST00000429440 LAMC3Q9Y6N6 1575 aa11.83□□□□□ -0.52
CDC42BPA-206ENST00000429440 WDR97A6NE52 1622 aa11.82□□□□□ -0.52
CDC42BPA-206ENST00000429440 NFKBIBQ15653 356 aa11.82□□□□□ -0.52
CDC42BPA-206ENST00000429440 URB2Q14146 1524 aaKnown RBP11.81□□□□□ -0.52
CDC42BPA-206ENST00000429440 DCAF11Q8TEB1 546 aa11.81□□□□□ -0.52
CDC42BPA-206ENST00000429440 RRAGDQ9NQL2 400 aaPredicted RBP11.81□□□□□ -0.52
CDC42BPA-206ENST00000429440 NAP1L5Q96NT1 182 aaPredicted RBP11.8□□□□□ -0.52
CDC42BPA-206ENST00000429440 TIAM1Q13009 1591 aa11.79□□□□□ -0.52
CDC42BPA-206ENST00000429440 MAP3K1Q13233 1512 aa11.79□□□□□ -0.52
CDC42BPA-206ENST00000429440 PDCL3Q9H2J4 239 aa11.79□□□□□ -0.52
CDC42BPA-206ENST00000429440 PNNQ9H307 717 aaKnown RBP11.79□□□□□ -0.52
CDC42BPA-206ENST00000429440 DDRGK1Q96HY6 314 aa11.78□□□□□ -0.52
CDC42BPA-206ENST00000429440 CLCN1P35523 988 aa11.78□□□□□ -0.52
CDC42BPA-206ENST00000429440 CUL7Q14999 1698 aa11.77□□□□□ -0.53
CDC42BPA-206ENST00000429440 ABCA5Q8WWZ7 1642 aa11.76□□□□□ -0.53
CDC42BPA-206ENST00000429440 PCF11O94913 1555 aaKnown RBP11.75□□□□□ -0.53
CDC42BPA-206ENST00000429440 CTTNBP2Q8WZ74 1663 aa11.75□□□□□ -0.53
CDC42BPA-206ENST00000429440 KIF21AQ7Z4S6 1674 aa11.74□□□□□ -0.53
CDC42BPA-206ENST00000429440 CFAP43Q8NDM7 1665 aa11.74□□□□□ -0.53
CDC42BPA-206ENST00000429440 TCERG1O14776 1098 aaKnown RBP11.74□□□□□ -0.53
CDC42BPA-206ENST00000429440 CCNB3Q8WWL7 1395 aa11.73□□□□□ -0.53
CDC42BPA-206ENST00000429440 LRRC9Q6ZRR7 1453 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms