RNA–Protein interactions for RNA: ENST00000429440.5

CDC42BPA-206, Transcript of CDC42 binding protein kinase alpha, humanhuman

TSL 2

Gene CDC42BPA, Length 2,501 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42BPA-206ENST00000429440 NISCHQ9Y2I1 1504 aa16.86■□□□□ 0.29
CDC42BPA-206ENST00000429440 PELP1Q8IZL8 1130 aaKnown RBP15.82■□□□□ 0.12
CDC42BPA-206ENST00000429440 MYT1Q01538 1121 aa15.5■□□□□ 0.07
CDC42BPA-206ENST00000429440 HRCP23327 699 aa15.09■□□□□ 0.01
CDC42BPA-206ENST00000429440 TTBK1Q5TCY1 1321 aaPredicted RBP14.83□□□□□ -0.04
CDC42BPA-206ENST00000429440 SCAF1Q9H7N4 1312 aaKnown RBP14.57□□□□□ -0.08
CDC42BPA-206ENST00000429440 PPARGC1BQ86YN6 1023 aaKnown RBP14.5□□□□□ -0.09
CDC42BPA-206ENST00000429440 CCDC180Q9P1Z9 1646 aa14.44□□□□□ -0.1
CDC42BPA-206ENST00000429440 PCGF6Q9BYE7 350 aa14.27□□□□□ -0.13
CDC42BPA-206ENST00000429440 ZCCHC6Q5VYS8 1495 aaKnown RBP14.26□□□□□ -0.13
CDC42BPA-206ENST00000429440 SHROOM4Q9ULL8 1493 aa14.13□□□□□ -0.15
CDC42BPA-206ENST00000429440 PRKCSHP14314 528 aaPredicted RBP14.1□□□□□ -0.15
CDC42BPA-206ENST00000429440 BCL11AQ9H165 835 aa14.1□□□□□ -0.15
CDC42BPA-206ENST00000429440 ACIN1Q9UKV3 1341 aaKnown RBP14.08□□□□□ -0.16
CDC42BPA-206ENST00000429440 ZEB1P37275 1124 aaPredicted RBP14.05□□□□□ -0.16
CDC42BPA-206ENST00000429440 CENPBP07199 599 aaPredicted RBP14.01□□□□□ -0.17
CDC42BPA-206ENST00000429440 ERICH6Q7L0X2 663 aa13.98□□□□□ -0.17
CDC42BPA-206ENST00000429440 MYO15BQ96JP2 1530 aa13.97□□□□□ -0.17
CDC42BPA-206ENST00000429440 DCAF1Q9Y4B6 1507 aa13.92□□□□□ -0.18
CDC42BPA-206ENST00000429440 GTF3C3Q9Y5Q9 886 aa13.92□□□□□ -0.18
CDC42BPA-206ENST00000429440 NEUROD1Q13562 356 aa13.91□□□□□ -0.18
CDC42BPA-206ENST00000429440 FAM9AQ8IZU1 332 aaPredicted RBP13.91□□□□□ -0.18
CDC42BPA-206ENST00000429440 APLP2Q06481 763 aa13.86□□□□□ -0.19
CDC42BPA-206ENST00000429440 TRIM26Q12899 539 aaPredicted RBP13.8□□□□□ -0.2
CDC42BPA-206ENST00000429440 DCAF8L2P0C7V8 631 aa13.77□□□□□ -0.21
CDC42BPA-206ENST00000429440 SUPT5HO00267 1087 aaKnown RBP13.77□□□□□ -0.21
CDC42BPA-206ENST00000429440 ANP32EQ9BTT0 268 aa13.7□□□□□ -0.22
CDC42BPA-206ENST00000429440 CHIC1Q5VXU3 224 aa13.61□□□□□ -0.23
CDC42BPA-206ENST00000429440 CSRNP3Q8WYN3 585 aa13.47□□□□□ -0.25
CDC42BPA-206ENST00000429440 ABCC9O60706 1549 aa13.44□□□□□ -0.26
CDC42BPA-206ENST00000429440 SCRIBQ14160 1630 aa13.43□□□□□ -0.26
CDC42BPA-206ENST00000429440 DIEXFQ68CQ4 756 aaKnown RBP13.42□□□□□ -0.26
CDC42BPA-206ENST00000429440 CLSPNQ9HAW4 1339 aa13.35□□□□□ -0.27
CDC42BPA-206ENST00000429440 NACADO15069 1562 aa13.33□□□□□ -0.27
CDC42BPA-206ENST00000429440 RSF1Q96T23 1441 aaPredicted RBP13.28□□□□□ -0.28
CDC42BPA-206ENST00000429440 TSHZ2Q9NRE2 1034 aa13.26□□□□□ -0.29
CDC42BPA-206ENST00000429440 LOC105371045A0A1W2PR82 267 aa13.22□□□□□ -0.29
CDC42BPA-206ENST00000429440 SLC24A1O60721 1099 aa13.2□□□□□ -0.3
CDC42BPA-206ENST00000429440 TRIM41Q8WV44 630 aa13.2□□□□□ -0.3
CDC42BPA-206ENST00000429440 CECR2Q9BXF3 1484 aa13.14□□□□□ -0.31
CDC42BPA-206ENST00000429440 RB1CC1Q8TDY2 1594 aa13.14□□□□□ -0.31
CDC42BPA-206ENST00000429440 SUPT16HQ9Y5B9 1047 aaKnown RBP13.13□□□□□ -0.31
CDC42BPA-206ENST00000429440 UBE2Q2Q8WVN8 375 aa13.1□□□□□ -0.31
CDC42BPA-206ENST00000429440 MROH2BQ7Z745 1585 aa13.1□□□□□ -0.31
CDC42BPA-206ENST00000429440 YTHDC1Q96MU7 727 aaKnown RBP13.08□□□□□ -0.32
CDC42BPA-206ENST00000429440 MYT1LQ9UL68 1186 aa13.08□□□□□ -0.32
CDC42BPA-206ENST00000429440 ANO8Q9HCE9 1232 aaPredicted RBP13.07□□□□□ -0.32
CDC42BPA-206ENST00000429440 ZNF316A6NFI3 1004 aaPredicted RBP13.04□□□□□ -0.32
CDC42BPA-206ENST00000429440 CCER1Q8TC90 406 aaPredicted RBP13.03□□□□□ -0.32
CDC42BPA-206ENST00000429440 WIZO95785 1651 aa13.02□□□□□ -0.32
CDC42BPA-206ENST00000429440 UNC13AQ9UPW8 1703 aa13.02□□□□□ -0.32
CDC42BPA-206ENST00000429440 ERICH6BQ5W0A0 696 aa13□□□□□ -0.33
CDC42BPA-206ENST00000429440 EIF5BO60841 1220 aaKnown RBP12.98□□□□□ -0.33
CDC42BPA-206ENST00000429440 MIER1Q8N108 512 aa12.96□□□□□ -0.34
CDC42BPA-206ENST00000429440 DAXXQ9UER7 740 aaPredicted RBP12.96□□□□□ -0.34
CDC42BPA-206ENST00000429440 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.95□□□□□ -0.34
CDC42BPA-206ENST00000429440 BAZ1AQ9NRL2 1556 aaPredicted RBP12.95□□□□□ -0.34
CDC42BPA-206ENST00000429440 EIF4G1Q04637 1599 aaKnown RBP12.89□□□□□ -0.35
CDC42BPA-206ENST00000429440 RBM19Q9Y4C8 960 aaKnown RBP12.89□□□□□ -0.35
CDC42BPA-206ENST00000429440 SMARCA4P51532 1647 aa12.88□□□□□ -0.35
CDC42BPA-206ENST00000429440 BICRAQ9NZM4 1560 aa12.85□□□□□ -0.35
CDC42BPA-206ENST00000429440 SALL2Q9Y467 1007 aaPredicted RBP12.85□□□□□ -0.35
CDC42BPA-206ENST00000429440 DEKP35659 375 aaKnown RBP12.82□□□□□ -0.36
CDC42BPA-206ENST00000429440 TOP2AP11388 1531 aaKnown RBP12.82□□□□□ -0.36
CDC42BPA-206ENST00000429440 MSH5O43196 834 aa12.81□□□□□ -0.36
CDC42BPA-206ENST00000429440 FANCIQ9NVI1 1328 aa12.79□□□□□ -0.36
CDC42BPA-206ENST00000429440 SMARCA2P51531 1590 aa12.76□□□□□ -0.37
CDC42BPA-206ENST00000429440 CCDC88BA6NC98 1476 aa12.74□□□□□ -0.37
CDC42BPA-206ENST00000429440 PKNOX2Q96KN3 472 aa12.72□□□□□ -0.37
CDC42BPA-206ENST00000429440 PABPN1Q86U42 306 aaKnown RBP eCLIP12.7□□□□□ -0.38
CDC42BPA-206ENST00000429440 CCDC136Q96JN2 1154 aa12.69□□□□□ -0.38
CDC42BPA-206ENST00000429440 PEG3Q9GZU2 1588 aa12.69□□□□□ -0.38
CDC42BPA-206ENST00000429440 ABCC8Q09428 1581 aa12.66□□□□□ -0.38
CDC42BPA-206ENST00000429440 PODXL2Q9NZ53 605 aa12.57□□□□□ -0.4
CDC42BPA-206ENST00000429440 FKBP8Q14318 412 aa12.56□□□□□ -0.4
CDC42BPA-206ENST00000429440 ATAD2BQ9ULI0 1458 aa12.55□□□□□ -0.4
CDC42BPA-206ENST00000429440 PLEKHG5O94827 1062 aa12.55□□□□□ -0.4
CDC42BPA-206ENST00000429440 BCANQ96GW7 911 aa12.55□□□□□ -0.4
CDC42BPA-206ENST00000429440 EHMT2Q96KQ7 1210 aa12.55□□□□□ -0.4
CDC42BPA-206ENST00000429440 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.53□□□□□ -0.4
CDC42BPA-206ENST00000429440 NEFLP07196 543 aa12.51□□□□□ -0.41
CDC42BPA-206ENST00000429440 SOGA1O94964 1423 aa12.5□□□□□ -0.41
CDC42BPA-206ENST00000429440 IL27Q8NEV9 243 aa12.48□□□□□ -0.41
CDC42BPA-206ENST00000429440 BAZ1BQ9UIG0 1483 aaKnown RBP12.47□□□□□ -0.41
CDC42BPA-206ENST00000429440 RUSC2Q8N2Y8 1516 aa12.47□□□□□ -0.41
CDC42BPA-206ENST00000429440 SYNJ1O43426 1573 aa12.44□□□□□ -0.42
CDC42BPA-206ENST00000429440 CDK11AQ9UQ88 783 aaPredicted RBP12.44□□□□□ -0.42
CDC42BPA-206ENST00000429440 WRNQ14191 1432 aaPredicted RBP eCLIP12.44□□□□□ -0.42
CDC42BPA-206ENST00000429440 GLIPR1L2Q4G1C9 344 aa12.42□□□□□ -0.42
CDC42BPA-206ENST00000429440 C11orf95C9JLR9 678 aaPredicted RBP12.41□□□□□ -0.42
CDC42BPA-206ENST00000429440 EEA1Q15075 1411 aa12.41□□□□□ -0.42
CDC42BPA-206ENST00000429440 NOP58Q9Y2X3 529 aaKnown RBP12.4□□□□□ -0.42
CDC42BPA-206ENST00000429440 ITGAEP38570 1179 aa12.39□□□□□ -0.43
CDC42BPA-206ENST00000429440 RTL5Q5HYW3 569 aaPredicted RBP12.38□□□□□ -0.43
CDC42BPA-206ENST00000429440 RTN4Q9NQC3 1192 aaKnown RBP12.38□□□□□ -0.43
CDC42BPA-206ENST00000429440 CEP162Q5TB80 1403 aa12.37□□□□□ -0.43
CDC42BPA-206ENST00000429440 TNIKQ9UKE5 1360 aa12.37□□□□□ -0.43
CDC42BPA-206ENST00000429440 HMGXB3Q12766 1538 aa12.35□□□□□ -0.43
CDC42BPA-206ENST00000429440 NBR1Q14596 966 aa12.35□□□□□ -0.43
CDC42BPA-206ENST00000429440 NCAPD3P42695 1498 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms