RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 WDR97A6NE52 1622 aa21.2■□□□□ 0.99
LIG1-202ENST00000427526 GAPVD1Q14C86 1478 aa21.19■□□□□ 0.98
LIG1-202ENST00000427526 MRC2Q9UBG0 1479 aa21.16■□□□□ 0.98
LIG1-202ENST00000427526 P3H3Q8IVL6 736 aa21.16■□□□□ 0.98
LIG1-202ENST00000427526 CLSPNQ9HAW4 1339 aa21.16■□□□□ 0.98
LIG1-202ENST00000427526 ABCA5Q8WWZ7 1642 aa21.15■□□□□ 0.98
LIG1-202ENST00000427526 RRBP1Q9P2E9 1410 aaKnown RBP21.15■□□□□ 0.98
LIG1-202ENST00000427526 CUL7Q14999 1698 aa21.14■□□□□ 0.97
LIG1-202ENST00000427526 TARBP1Q13395 1621 aaKnown RBP21.13■□□□□ 0.97
LIG1-202ENST00000427526 DHX57Q6P158 1386 aaKnown RBP21.12■□□□□ 0.97
LIG1-202ENST00000427526 GTF3C3Q9Y5Q9 886 aa21.11■□□□□ 0.97
LIG1-202ENST00000427526 AQRO60306 1485 aaKnown RBP eCLIP21.08■□□□□ 0.962e-7■■■■■ 34
LIG1-202ENST00000427526 MIER1Q8N108 512 aa21.07■□□□□ 0.96
LIG1-202ENST00000427526 FHOD3Q2V2M9 1422 aa21.02■□□□□ 0.96
LIG1-202ENST00000427526 ERCC6Q03468 1493 aa21.01■□□□□ 0.95
LIG1-202ENST00000427526 CCNB3Q8WWL7 1395 aa21.01■□□□□ 0.95
LIG1-202ENST00000427526 WDR62O43379 1518 aa21■□□□□ 0.95
LIG1-202ENST00000427526 ATP1B4Q9UN42 357 aaPredicted RBP20.99■□□□□ 0.95
LIG1-202ENST00000427526 MAP3K1Q13233 1512 aa20.98■□□□□ 0.95
LIG1-202ENST00000427526 ZNF608Q9ULD9 1512 aaPredicted RBP20.98■□□□□ 0.95
LIG1-202ENST00000427526 CTTNBP2Q8WZ74 1663 aa20.97■□□□□ 0.95
LIG1-202ENST00000427526 FHAD1B1AJZ9 1412 aa20.96■□□□□ 0.95
LIG1-202ENST00000427526 IFT140Q96RY7 1462 aa20.95■□□□□ 0.94
LIG1-202ENST00000427526 TIAM1Q13009 1591 aa20.94■□□□□ 0.94
LIG1-202ENST00000427526 EFCAB5A4FU69 1503 aa20.94■□□□□ 0.94
LIG1-202ENST00000427526 YTHDC1Q96MU7 727 aaKnown RBP20.92■□□□□ 0.94
LIG1-202ENST00000427526 PBRM1Q86U86 1689 aa20.92■□□□□ 0.94
LIG1-202ENST00000427526 GRIN2BQ13224 1484 aa20.92■□□□□ 0.94
LIG1-202ENST00000427526 PCF11O94913 1555 aaKnown RBP20.91■□□□□ 0.94
LIG1-202ENST00000427526 LRRC9Q6ZRR7 1453 aa20.87■□□□□ 0.93
LIG1-202ENST00000427526 ADAMTS12P58397 1594 aa20.86■□□□□ 0.93
LIG1-202ENST00000427526 CASKIN1Q8WXD9 1431 aa20.85■□□□□ 0.93
LIG1-202ENST00000427526 THOC2Q8NI27 1593 aaKnown RBP20.84■□□□□ 0.93
LIG1-202ENST00000427526 FMN1Q68DA7 1419 aa20.83■□□□□ 0.93
LIG1-202ENST00000427526 FYCO1Q9BQS8 1478 aa20.83■□□□□ 0.92
LIG1-202ENST00000427526 SAMD9Q5K651 1589 aa20.82■□□□□ 0.92
LIG1-202ENST00000427526 RAB3GAP2Q9H2M9 1393 aa20.81■□□□□ 0.92
LIG1-202ENST00000427526 ITGAEP38570 1179 aa20.8■□□□□ 0.92
LIG1-202ENST00000427526 SNAPC4Q5SXM2 1469 aa20.79■□□□□ 0.92
LIG1-202ENST00000427526 PHLDB1Q86UU1 1377 aa20.79■□□□□ 0.92
LIG1-202ENST00000427526 CFAP43Q8NDM7 1665 aa20.78■□□□□ 0.92
LIG1-202ENST00000427526 EIF4G3O43432 1585 aaKnown RBP20.78■□□□□ 0.92
LIG1-202ENST00000427526 MAPKBP1O60336 1514 aa20.77■□□□□ 0.92
LIG1-202ENST00000427526 SETD5Q9C0A6 1442 aa20.75■□□□□ 0.91
LIG1-202ENST00000427526 IQGAP2Q13576 1575 aa20.75■□□□□ 0.91
LIG1-202ENST00000427526 FBLN2P98095 1184 aa20.69■□□□□ 0.9
LIG1-202ENST00000427526 FAM50AQ14320 339 aaKnown RBP20.69■□□□□ 0.9
LIG1-202ENST00000427526 CHMP7Q8WUX9 453 aaPredicted RBP20.69■□□□□ 0.9
LIG1-202ENST00000427526 GRIN2AQ12879 1464 aa20.69■□□□□ 0.9
LIG1-202ENST00000427526 KIAA0586Q9BVV6 1533 aa20.66■□□□□ 0.9
LIG1-202ENST00000427526 MTUS2Q5JR59 1369 aa20.66■□□□□ 0.9
LIG1-202ENST00000427526 MAGI1Q96QZ7 1491 aaPredicted RBP20.64■□□□□ 0.9
LIG1-202ENST00000427526 UGGT2Q9NYU1 1516 aa20.63■□□□□ 0.89
LIG1-202ENST00000427526 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.63■□□□□ 0.89
LIG1-202ENST00000427526 LRRIQ1Q96JM4 1722 aa20.63■□□□□ 0.89
LIG1-202ENST00000427526 ARID3CA6NKF2 412 aa20.62■□□□□ 0.89
LIG1-202ENST00000427526 SYNJ2O15056 1496 aa20.61■□□□□ 0.89
LIG1-202ENST00000427526 DISP1Q96F81 1524 aa20.58■□□□□ 0.89
LIG1-202ENST00000427526 CEP170Q5SW79 1584 aa20.55■□□□□ 0.88
LIG1-202ENST00000427526 SIN3AQ96ST3 1273 aa20.54■□□□□ 0.88
LIG1-202ENST00000427526 TIMELESSQ9UNS1 1208 aa20.54■□□□□ 0.88
LIG1-202ENST00000427526 MAGI3Q5TCQ9 1506 aa20.54■□□□□ 0.88
LIG1-202ENST00000427526 FGD6Q6ZV73 1430 aa20.53■□□□□ 0.88
LIG1-202ENST00000427526 NCOA2Q15596 1464 aa20.53■□□□□ 0.88
LIG1-202ENST00000427526 KIAA0556O60303 1618 aa20.53■□□□□ 0.88
LIG1-202ENST00000427526 EPRSP07814 1512 aaKnown RBP20.53■□□□□ 0.88
LIG1-202ENST00000427526 CCDC18Q5T9S5 1454 aa20.52■□□□□ 0.87
LIG1-202ENST00000427526 HECW1Q76N89 1606 aa20.51■□□□□ 0.87
LIG1-202ENST00000427526 CDK13Q14004 1512 aaKnown RBP20.51■□□□□ 0.87
LIG1-202ENST00000427526 JPH4Q96JJ6 628 aa20.5■□□□□ 0.87
LIG1-202ENST00000427526 NUP160Q12769 1436 aa20.49■□□□□ 0.87
LIG1-202ENST00000427526 EHBP1L1Q8N3D4 1523 aa20.49■□□□□ 0.87
LIG1-202ENST00000427526 MYOM3Q5VTT5 1437 aa20.47■□□□□ 0.87
LIG1-202ENST00000427526 SUPT6HQ7KZ85 1726 aaKnown RBP20.45■□□□□ 0.86
LIG1-202ENST00000427526 PPP1R15AO75807 674 aaPredicted RBP20.43■□□□□ 0.86
LIG1-202ENST00000427526 PTPRKQ15262 1439 aa20.42■□□□□ 0.86
LIG1-202ENST00000427526 ARHGEF11O15085 1522 aa20.42■□□□□ 0.86
LIG1-202ENST00000427526 NUP153P49790 1475 aaKnown RBP20.42■□□□□ 0.86
LIG1-202ENST00000427526 HFM1A2PYH4 1435 aa20.41■□□□□ 0.86
LIG1-202ENST00000427526 KCNH8Q96L42 1107 aa20.39■□□□□ 0.85
LIG1-202ENST00000427526 CARMIL2Q6F5E8 1435 aa20.39■□□□□ 0.85
LIG1-202ENST00000427526 PLB1Q6P1J6 1458 aa20.38■□□□□ 0.85
LIG1-202ENST00000427526 SUPT16HQ9Y5B9 1047 aaKnown RBP20.38■□□□□ 0.85
LIG1-202ENST00000427526 RAPGEF6Q8TEU7 1601 aa20.37■□□□□ 0.85
LIG1-202ENST00000427526 PTPN23Q9H3S7 1636 aa20.36■□□□□ 0.85
LIG1-202ENST00000427526 UACAQ9BZF9 1416 aa20.36■□□□□ 0.85
LIG1-202ENST00000427526 DDX10Q13206 875 aaKnown RBP20.36■□□□□ 0.85
LIG1-202ENST00000427526 NAIPQ13075 1403 aa20.33■□□□□ 0.85
LIG1-202ENST00000427526 CDK11AQ9UQ88 783 aaPredicted RBP20.32■□□□□ 0.84
LIG1-202ENST00000427526 CHIC2Q9UKJ5 165 aa20.3■□□□□ 0.84
LIG1-202ENST00000427526 PRG4Q92954 1404 aaPredicted RBP20.29■□□□□ 0.84
LIG1-202ENST00000427526 TCOF1Q13428 1488 aaKnown RBP20.28■□□□□ 0.84
LIG1-202ENST00000427526 TONSLQ96HA7 1378 aa20.27■□□□□ 0.84
LIG1-202ENST00000427526 RRP7BPQ9NSQ0 103 aa20.27■□□□□ 0.84
LIG1-202ENST00000427526 MIA2Q96PC5 1412 aa20.27■□□□□ 0.83
LIG1-202ENST00000427526 HIRIP3Q9BW71 556 aaPredicted RBP20.25■□□□□ 0.83
LIG1-202ENST00000427526 ZNF644Q9H582 1327 aaPredicted RBP20.25■□□□□ 0.83
LIG1-202ENST00000427526 CHD1O14646 1710 aa20.24■□□□□ 0.83
LIG1-202ENST00000427526 TROQ12816 1431 aaPredicted RBP20.23■□□□□ 0.83
LIG1-202ENST00000427526 KDM5BQ9UGL1 1544 aa20.21■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms