RNA–Protein interactions for RNA: ENST00000422991.1

COL7A1-202, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-202ENST00000422991 RIMBP3Q9UFD9 1639 aa28.14■■■□□ 2.09
COL7A1-202ENST00000422991 CLASP1Q7Z460 1538 aa28.13■■■□□ 2.09
COL7A1-202ENST00000422991 ARHGEF11O15085 1522 aa28.11■■■□□ 2.09
COL7A1-202ENST00000422991 CTTNBP2Q8WZ74 1663 aa28.03■■■□□ 2.08
COL7A1-202ENST00000422991 KIAA0586Q9BVV6 1533 aa27.99■■■□□ 2.07
COL7A1-202ENST00000422991 GOLGA3Q08378 1498 aa27.98■■■□□ 2.07
COL7A1-202ENST00000422991 SHROOM2Q13796 1616 aa27.96■■■□□ 2.07
COL7A1-202ENST00000422991 IQGAP2Q13576 1575 aa27.95■■■□□ 2.07
COL7A1-202ENST00000422991 CYB5RLQ6IPT4 315 aa27.86■■■□□ 2.05
COL7A1-202ENST00000422991 ARAP1Q96P48 1450 aa27.86■■■□□ 2.05
COL7A1-202ENST00000422991 EHMT2Q96KQ7 1210 aa27.82■■■□□ 2.04
COL7A1-202ENST00000422991 UGGT2Q9NYU1 1516 aa27.8■■■□□ 2.04
COL7A1-202ENST00000422991 JPH4Q96JJ6 628 aa27.78■■■□□ 2.04
COL7A1-202ENST00000422991 ERCC6L2Q5T890 1561 aa27.77■■■□□ 2.04
COL7A1-202ENST00000422991 UBTFP17480 764 aaKnown RBP27.76■■■□□ 2.03
COL7A1-202ENST00000422991 PRG4Q92954 1404 aaPredicted RBP27.75■■■□□ 2.03
COL7A1-202ENST00000422991 DISP1Q96F81 1524 aa27.7■■■□□ 2.02
COL7A1-202ENST00000422991 KIAA0556O60303 1618 aa27.69■■■□□ 2.02
COL7A1-202ENST00000422991 TNIKQ9UKE5 1360 aa27.68■■■□□ 2.02
COL7A1-202ENST00000422991 SAMD9Q5K651 1589 aa27.67■■■□□ 2.02
COL7A1-202ENST00000422991 CARMIL2Q6F5E8 1435 aa27.65■■■□□ 2.02
COL7A1-202ENST00000422991 LOC105371045A0A1W2PR82 267 aa27.62■■■□□ 2.01
COL7A1-202ENST00000422991 EFCAB5A4FU69 1503 aa27.62■■■□□ 2.01
COL7A1-202ENST00000422991 RANGAP1P46060 587 aaPredicted RBP27.53■■■□□ 2
COL7A1-202ENST00000422991 ARHGAP35Q9NRY4 1499 aa27.51■■■□□ 2
COL7A1-202ENST00000422991 CLIP1P30622 1438 aa27.47■■□□□ 1.99
COL7A1-202ENST00000422991 CEP162Q5TB80 1403 aa27.47■■□□□ 1.99
COL7A1-202ENST00000422991 PTPRGP23470 1445 aa27.46■■□□□ 1.99
COL7A1-202ENST00000422991 FHOD3Q2V2M9 1422 aa27.46■■□□□ 1.99
COL7A1-202ENST00000422991 P3H3Q8IVL6 736 aa27.43■■□□□ 1.98
COL7A1-202ENST00000422991 TRHP20396 242 aaPredicted RBP27.39■■□□□ 1.98
COL7A1-202ENST00000422991 TTBK1Q5TCY1 1321 aaPredicted RBP27.37■■□□□ 1.97
COL7A1-202ENST00000422991 ADCY10Q96PN6 1610 aa27.35■■□□□ 1.97
COL7A1-202ENST00000422991 ABCA8O94911 1581 aa27.35■■□□□ 1.97
COL7A1-202ENST00000422991 UACAQ9BZF9 1416 aa27.32■■□□□ 1.96
COL7A1-202ENST00000422991 PLB1Q6P1J6 1458 aa27.32■■□□□ 1.96
COL7A1-202ENST00000422991 ABCC2Q92887 1545 aa27.31■■□□□ 1.96
COL7A1-202ENST00000422991 UHRF1BP1LA0JNW5 1464 aa27.31■■□□□ 1.96
COL7A1-202ENST00000422991 RAPGEF6Q8TEU7 1601 aa27.3■■□□□ 1.96
COL7A1-202ENST00000422991 FMN1Q68DA7 1419 aa27.29■■□□□ 1.96
COL7A1-202ENST00000422991 PCF11O94913 1555 aaKnown RBP27.22■■□□□ 1.95
COL7A1-202ENST00000422991 HECW1Q76N89 1606 aa27.18■■□□□ 1.94
COL7A1-202ENST00000422991 NUP153P49790 1475 aaKnown RBP27.18■■□□□ 1.94
COL7A1-202ENST00000422991 KDM5BQ9UGL1 1544 aa27.17■■□□□ 1.94
COL7A1-202ENST00000422991 ZCCHC11Q5TAX3 1644 aaKnown RBP27.16■■□□□ 1.94
COL7A1-202ENST00000422991 CASKIN1Q8WXD9 1431 aa27.15■■□□□ 1.94
COL7A1-202ENST00000422991 FYCO1Q9BQS8 1478 aa27.14■■□□□ 1.94
COL7A1-202ENST00000422991 LRRIQ1Q96JM4 1722 aa27.11■■□□□ 1.93
COL7A1-202ENST00000422991 VPS8Q8N3P4 1428 aa27.11■■□□□ 1.93
COL7A1-202ENST00000422991 NPM1P06748 294 aaKnown RBP eCLIP27.11■■□□□ 1.93
COL7A1-202ENST00000422991 ATP10BO94823 1461 aa27.07■■□□□ 1.92
COL7A1-202ENST00000422991 MAPKBP1O60336 1514 aa27.07■■□□□ 1.92
COL7A1-202ENST00000422991 EPRSP07814 1512 aaKnown RBP27.05■■□□□ 1.92
COL7A1-202ENST00000422991 CDK13Q14004 1512 aaKnown RBP27.04■■□□□ 1.92
COL7A1-202ENST00000422991 CCDC18Q5T9S5 1454 aa27.01■■□□□ 1.91
COL7A1-202ENST00000422991 ARID3CA6NKF2 412 aa27■■□□□ 1.91
COL7A1-202ENST00000422991 ATP1B4Q9UN42 357 aaPredicted RBP26.98■■□□□ 1.91
COL7A1-202ENST00000422991 KIF13AQ9H1H9 1805 aa26.97■■□□□ 1.91
COL7A1-202ENST00000422991 ASXL2Q76L83 1435 aa26.97■■□□□ 1.91
COL7A1-202ENST00000422991 CFAP43Q8NDM7 1665 aa26.95■■□□□ 1.9
COL7A1-202ENST00000422991 ABCC10Q5T3U5 1492 aa26.94■■□□□ 1.9
COL7A1-202ENST00000422991 WDR7Q9Y4E6 1490 aa26.93■■□□□ 1.9
COL7A1-202ENST00000422991 DIP2BQ9P265 1576 aa26.88■■□□□ 1.89
COL7A1-202ENST00000422991 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.88■■□□□ 1.89
COL7A1-202ENST00000422991 FAM69CQ0P6D2 419 aa26.88■■□□□ 1.89
COL7A1-202ENST00000422991 HNRNPUL2Q1KMD3 747 aaKnown RBP26.88■■□□□ 1.89
COL7A1-202ENST00000422991 TIAM1Q13009 1591 aa26.88■■□□□ 1.89
COL7A1-202ENST00000422991 MAP3K1Q13233 1512 aa26.85■■□□□ 1.89
COL7A1-202ENST00000422991 MAGI3Q5TCQ9 1506 aa26.84■■□□□ 1.89
COL7A1-202ENST00000422991 GLI2P10070 1586 aa26.8■■□□□ 1.88
COL7A1-202ENST00000422991 TROQ12816 1431 aaPredicted RBP26.8■■□□□ 1.88
COL7A1-202ENST00000422991 PLEKHD1A6NEE1 506 aa26.79■■□□□ 1.88
COL7A1-202ENST00000422991 CDK11AQ9UQ88 783 aaPredicted RBP26.79■■□□□ 1.88
COL7A1-202ENST00000422991 KIF14Q15058 1648 aa26.76■■□□□ 1.87
COL7A1-202ENST00000422991 EHBP1L1Q8N3D4 1523 aa26.76■■□□□ 1.87
COL7A1-202ENST00000422991 ABCA9Q8IUA7 1624 aa26.74■■□□□ 1.87
COL7A1-202ENST00000422991 MAP3K4Q9Y6R4 1608 aa26.72■■□□□ 1.87
COL7A1-202ENST00000422991 MTUS2Q5JR59 1369 aa26.71■■□□□ 1.87
COL7A1-202ENST00000422991 LRRC9Q6ZRR7 1453 aa26.71■■□□□ 1.87
COL7A1-202ENST00000422991 KCNH8Q96L42 1107 aa26.71■■□□□ 1.87
COL7A1-202ENST00000422991 TTC37Q6PGP7 1564 aa26.71■■□□□ 1.87
COL7A1-202ENST00000422991 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP26.7■■□□□ 1.86
COL7A1-202ENST00000422991 APLP2Q06481 763 aa26.68■■□□□ 1.86
COL7A1-202ENST00000422991 TSPOAP1O95153 1857 aa26.66■■□□□ 1.86
COL7A1-202ENST00000422991 SUPT6HQ7KZ85 1726 aaKnown RBP26.65■■□□□ 1.86
COL7A1-202ENST00000422991 PPRC1Q5VV67 1664 aaKnown RBP26.63■■□□□ 1.85
COL7A1-202ENST00000422991 KANK4Q5T7N3 995 aaPredicted RBP26.62■■□□□ 1.85
COL7A1-202ENST00000422991 MYO5CQ9NQX4 1742 aa26.61■■□□□ 1.85
COL7A1-202ENST00000422991 CD109Q6YHK3 1445 aa26.59■■□□□ 1.85
COL7A1-202ENST00000422991 NCOA2Q15596 1464 aa26.57■■□□□ 1.84
COL7A1-202ENST00000422991 CDC42BPAQ5VT25 1732 aa26.57■■□□□ 1.84
COL7A1-202ENST00000422991 PREX2Q70Z35 1606 aa26.56■■□□□ 1.84
COL7A1-202ENST00000422991 ARAP3Q8WWN8 1544 aa26.54■■□□□ 1.84
COL7A1-202ENST00000422991 KDM6BO15054 1643 aa26.54■■□□□ 1.84
COL7A1-202ENST00000422991 ITSN2Q9NZM3 1697 aa26.52■■□□□ 1.84
COL7A1-202ENST00000422991 CDC42BPBQ9Y5S2 1711 aa26.52■■□□□ 1.84
COL7A1-202ENST00000422991 TEX14Q8IWB6 1497 aa26.5■■□□□ 1.83
COL7A1-202ENST00000422991 PLCH2O75038 1416 aa26.5■■□□□ 1.83
COL7A1-202ENST00000422991 CFAP74Q9C0B2 1584 aa26.49■■□□□ 1.83
COL7A1-202ENST00000422991 GPATCH8Q9UKJ3 1502 aaKnown RBP26.48■■□□□ 1.83
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms