RNA–Protein interactions for RNA: ENST00000422991.1

COL7A1-202, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-202ENST00000422991 NISCHQ9Y2I1 1504 aa40.64■■■■■ 4.1
COL7A1-202ENST00000422991 CCDC180Q9P1Z9 1646 aa36.01■■■■□ 3.35
COL7A1-202ENST00000422991 ABCC9O60706 1549 aa34.85■■■■□ 3.17
COL7A1-202ENST00000422991 ZCCHC6Q5VYS8 1495 aaKnown RBP33.98■■■■□ 3.03
COL7A1-202ENST00000422991 DCAF1Q9Y4B6 1507 aa33.68■■■□□ 2.98
COL7A1-202ENST00000422991 NACADO15069 1562 aa33.68■■■□□ 2.98
COL7A1-202ENST00000422991 MYO15BQ96JP2 1530 aa33.63■■■□□ 2.97
COL7A1-202ENST00000422991 RB1CC1Q8TDY2 1594 aa33.6■■■□□ 2.97
COL7A1-202ENST00000422991 DCAF8L2P0C7V8 631 aa33.59■■■□□ 2.97
COL7A1-202ENST00000422991 UNC13AQ9UPW8 1703 aa32.93■■■□□ 2.86
COL7A1-202ENST00000422991 SCRIBQ14160 1630 aa32.84■■■□□ 2.85
COL7A1-202ENST00000422991 BICRAQ9NZM4 1560 aa32.6■■■□□ 2.81
COL7A1-202ENST00000422991 PABPN1Q86U42 306 aaKnown RBP eCLIP32.5■■■□□ 2.793e-6■■□□□ 12.7
COL7A1-202ENST00000422991 SHROOM4Q9ULL8 1493 aa32.3■■■□□ 2.76
COL7A1-202ENST00000422991 DNAJC5BQ9UF47 199 aa32.23■■■□□ 2.75
COL7A1-202ENST00000422991 EIF4G1Q04637 1599 aaKnown RBP31.68■■■□□ 2.66
COL7A1-202ENST00000422991 CECR2Q9BXF3 1484 aa31.59■■■□□ 2.65
COL7A1-202ENST00000422991 CC2D2AQ9P2K1 1620 aa31.53■■■□□ 2.64
COL7A1-202ENST00000422991 BAZ1AQ9NRL2 1556 aaPredicted RBP31.47■■■□□ 2.63
COL7A1-202ENST00000422991 SMARCA4P51532 1647 aa31.47■■■□□ 2.63
COL7A1-202ENST00000422991 MROH2BQ7Z745 1585 aa31.33■■■□□ 2.61
COL7A1-202ENST00000422991 PEG3Q9GZU2 1588 aa31.17■■■□□ 2.58
COL7A1-202ENST00000422991 SMARCA2P51531 1590 aa31.14■■■□□ 2.58
COL7A1-202ENST00000422991 ATAD2BQ9ULI0 1458 aa31.13■■■□□ 2.57
COL7A1-202ENST00000422991 RSF1Q96T23 1441 aaPredicted RBP31.11■■■□□ 2.57
COL7A1-202ENST00000422991 WIZO95785 1651 aa31.03■■■□□ 2.56
COL7A1-202ENST00000422991 NCAPD3P42695 1498 aa31.03■■■□□ 2.56
COL7A1-202ENST00000422991 HMGXB3Q12766 1538 aa30.99■■■□□ 2.55
COL7A1-202ENST00000422991 BAZ1BQ9UIG0 1483 aaKnown RBP30.9■■■□□ 2.54
COL7A1-202ENST00000422991 TOP2AP11388 1531 aaKnown RBP30.74■■■□□ 2.51
COL7A1-202ENST00000422991 SUPT5HO00267 1087 aaKnown RBP30.57■■■□□ 2.48
COL7A1-202ENST00000422991 CCDC88BA6NC98 1476 aa30.33■■■□□ 2.45
COL7A1-202ENST00000422991 LAMC3Q9Y6N6 1575 aa30.19■■■□□ 2.42
COL7A1-202ENST00000422991 NESP48681 1621 aa30.15■■■□□ 2.42
COL7A1-202ENST00000422991 CADPSQ9ULU8 1353 aa30.13■■■□□ 2.41
COL7A1-202ENST00000422991 CFTRP13569 1480 aa30.08■■■□□ 2.41
COL7A1-202ENST00000422991 ERCC6Q03468 1493 aa30.08■■■□□ 2.41
COL7A1-202ENST00000422991 PRDM2Q13029 1718 aa30.02■■■□□ 2.4
COL7A1-202ENST00000422991 PDS5BQ9NTI5 1447 aa29.9■■■□□ 2.38
COL7A1-202ENST00000422991 KIF21AQ7Z4S6 1674 aa29.89■■■□□ 2.38
COL7A1-202ENST00000422991 CUX2O14529 1486 aa29.88■■■□□ 2.37
COL7A1-202ENST00000422991 FANCD2Q9BXW9 1451 aa29.81■■■□□ 2.36
COL7A1-202ENST00000422991 CEP164Q9UPV0 1460 aa29.74■■■□□ 2.35
COL7A1-202ENST00000422991 THOC2Q8NI27 1593 aaKnown RBP29.69■■■□□ 2.34
COL7A1-202ENST00000422991 MRC2Q9UBG0 1479 aa29.61■■■□□ 2.33
COL7A1-202ENST00000422991 WDR62O43379 1518 aa29.53■■■□□ 2.32
COL7A1-202ENST00000422991 URB2Q14146 1524 aaKnown RBP29.51■■■□□ 2.32
COL7A1-202ENST00000422991 DNMBPQ6XZF7 1577 aa29.44■■■□□ 2.3
COL7A1-202ENST00000422991 TOPBP1Q92547 1522 aa29.41■■■□□ 2.3
COL7A1-202ENST00000422991 ABCC8Q09428 1581 aa29.4■■■□□ 2.3
COL7A1-202ENST00000422991 CUX1P39880 1505 aa29.38■■■□□ 2.29
COL7A1-202ENST00000422991 WRNQ14191 1432 aaPredicted RBP eCLIP29.31■■■□□ 2.28
COL7A1-202ENST00000422991 DNAJC5Q9H3Z4 198 aa29.29■■■□□ 2.28
COL7A1-202ENST00000422991 BIVM-ERCC5R4GMW8 1640 aa29.29■■■□□ 2.28
COL7A1-202ENST00000422991 SYNJ1O43426 1573 aa29.28■■■□□ 2.28
COL7A1-202ENST00000422991 TOP2BQ02880 1626 aa29.27■■■□□ 2.28
COL7A1-202ENST00000422991 POLA1P09884 1462 aaPredicted RBP29.19■■■□□ 2.26
COL7A1-202ENST00000422991 FGD5Q6ZNL6 1462 aa29.18■■■□□ 2.26
COL7A1-202ENST00000422991 TARBP1Q13395 1621 aaKnown RBP29.09■■■□□ 2.25
COL7A1-202ENST00000422991 IFT140Q96RY7 1462 aa29.09■■■□□ 2.25
COL7A1-202ENST00000422991 RAD54L2Q9Y4B4 1467 aa29.03■■■□□ 2.24
COL7A1-202ENST00000422991 SOGA1O94964 1423 aa29.02■■■□□ 2.24
COL7A1-202ENST00000422991 WDR97A6NE52 1622 aa29.02■■■□□ 2.24
COL7A1-202ENST00000422991 ABCA10Q8WWZ4 1543 aa28.94■■■□□ 2.22
COL7A1-202ENST00000422991 ZNF608Q9ULD9 1512 aaPredicted RBP28.92■■■□□ 2.22
COL7A1-202ENST00000422991 EIF4G3O43432 1585 aaKnown RBP28.9■■■□□ 2.22
COL7A1-202ENST00000422991 TRIM41Q8WV44 630 aa28.86■■■□□ 2.21
COL7A1-202ENST00000422991 CHIC1Q5VXU3 224 aa28.83■■■□□ 2.21
COL7A1-202ENST00000422991 ABCA5Q8WWZ7 1642 aa28.83■■■□□ 2.21
COL7A1-202ENST00000422991 AQRO60306 1485 aaKnown RBP eCLIP28.79■■■□□ 2.2
COL7A1-202ENST00000422991 TDRD9Q8NDG6 1382 aaKnown RBP28.79■■■□□ 2.2
COL7A1-202ENST00000422991 PBRM1Q86U86 1689 aa28.74■■■□□ 2.19
COL7A1-202ENST00000422991 GAPVD1Q14C86 1478 aa28.72■■■□□ 2.19
COL7A1-202ENST00000422991 GRIN2BQ13224 1484 aa28.66■■■□□ 2.18
COL7A1-202ENST00000422991 KIF27Q86VH2 1401 aa28.65■■■□□ 2.18
COL7A1-202ENST00000422991 ERICH3Q5RHP9 1530 aa28.6■■■□□ 2.17
COL7A1-202ENST00000422991 OSCARQ8IYS5 282 aa28.58■■■□□ 2.17
COL7A1-202ENST00000422991 SNAPC4Q5SXM2 1469 aa28.58■■■□□ 2.17
COL7A1-202ENST00000422991 MAGI1Q96QZ7 1491 aaPredicted RBP28.56■■■□□ 2.16
COL7A1-202ENST00000422991 RUSC2Q8N2Y8 1516 aa28.55■■■□□ 2.16
COL7A1-202ENST00000422991 ADAMTS12P58397 1594 aa28.52■■■□□ 2.16
COL7A1-202ENST00000422991 CUL7Q14999 1698 aa28.47■■■□□ 2.15
COL7A1-202ENST00000422991 IGF1RP08069 1367 aa28.46■■■□□ 2.15
COL7A1-202ENST00000422991 CHD1O14646 1710 aa28.46■■■□□ 2.15
COL7A1-202ENST00000422991 EEA1Q15075 1411 aa28.43■■■□□ 2.14
COL7A1-202ENST00000422991 SYNJ2O15056 1496 aa28.43■■■□□ 2.14
COL7A1-202ENST00000422991 FHAD1B1AJZ9 1412 aa28.41■■■□□ 2.14
COL7A1-202ENST00000422991 GRIN2AQ12879 1464 aa28.32■■■□□ 2.12
COL7A1-202ENST00000422991 CARMIL1Q5VZK9 1371 aa28.3■■■□□ 2.12
COL7A1-202ENST00000422991 FBLN2P98095 1184 aa28.28■■■□□ 2.12
COL7A1-202ENST00000422991 CHMP7Q8WUX9 453 aaPredicted RBP28.28■■■□□ 2.12
COL7A1-202ENST00000422991 CSRNP3Q8WYN3 585 aa28.25■■■□□ 2.11
COL7A1-202ENST00000422991 PRXQ9BXM0 1461 aa28.25■■■□□ 2.11
COL7A1-202ENST00000422991 FAM9AQ8IZU1 332 aaPredicted RBP28.24■■■□□ 2.11
COL7A1-202ENST00000422991 RAPGEF2Q9Y4G8 1499 aa28.21■■■□□ 2.11
COL7A1-202ENST00000422991 CEP170Q5SW79 1584 aa28.18■■■□□ 2.1
COL7A1-202ENST00000422991 KIF21BO75037 1637 aa28.17■■■□□ 2.1
COL7A1-202ENST00000422991 NUP160Q12769 1436 aa28.17■■■□□ 2.1
COL7A1-202ENST00000422991 RIMBP3CA6NJZ7 1639 aa28.14■■■□□ 2.09
COL7A1-202ENST00000422991 RIMBP3BA6NNM3 1639 aa28.14■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms