RNA–Protein interactions for RNA: ENST00000418336.6

PKNOX1-202, Transcript of PBX/knotted 1 homeobox 1, humanhuman

TSL 2

Gene PKNOX1, Length 459 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1-202ENST00000418336 KIAA0586Q9BVV6 1533 aa35.28■■■■□ 3.24
PKNOX1-202ENST00000418336 JPH4Q96JJ6 628 aa35.25■■■■□ 3.23
PKNOX1-202ENST00000418336 PRG4Q92954 1404 aaPredicted RBP35.23■■■■□ 3.23
PKNOX1-202ENST00000418336 RAPGEF2Q9Y4G8 1499 aa35.16■■■■□ 3.22
PKNOX1-202ENST00000418336 PRXQ9BXM0 1461 aa35.08■■■■□ 3.21
PKNOX1-202ENST00000418336 IQGAP2Q13576 1575 aa35.03■■■■□ 3.2
PKNOX1-202ENST00000418336 DISP1Q96F81 1524 aa34.91■■■■□ 3.18
PKNOX1-202ENST00000418336 UGGT2Q9NYU1 1516 aa34.9■■■■□ 3.18
PKNOX1-202ENST00000418336 CHIC1Q5VXU3 224 aa34.89■■■■□ 3.18
PKNOX1-202ENST00000418336 CTTNBP2Q8WZ74 1663 aa34.85■■■■□ 3.17
PKNOX1-202ENST00000418336 ADCY10Q96PN6 1610 aa34.84■■■■□ 3.17
PKNOX1-202ENST00000418336 EEA1Q15075 1411 aa34.83■■■■□ 3.17
PKNOX1-202ENST00000418336 CSRNP3Q8WYN3 585 aa34.83■■■■□ 3.17
PKNOX1-202ENST00000418336 CARMIL2Q6F5E8 1435 aa34.78■■■■□ 3.16
PKNOX1-202ENST00000418336 TNIKQ9UKE5 1360 aa34.77■■■■□ 3.16
PKNOX1-202ENST00000418336 KIAA0556O60303 1618 aa34.75■■■■□ 3.15
PKNOX1-202ENST00000418336 TRHP20396 242 aaPredicted RBP34.75■■■■□ 3.15
PKNOX1-202ENST00000418336 PTPRGP23470 1445 aa34.74■■■■□ 3.15
PKNOX1-202ENST00000418336 MAPKBP1O60336 1514 aa34.64■■■■□ 3.14
PKNOX1-202ENST00000418336 UHRF1BP1LA0JNW5 1464 aa34.6■■■■□ 3.13
PKNOX1-202ENST00000418336 KIF21BO75037 1637 aa34.59■■■■□ 3.13
PKNOX1-202ENST00000418336 FAM9AQ8IZU1 332 aaPredicted RBP34.57■■■■□ 3.12
PKNOX1-202ENST00000418336 KIF13AQ9H1H9 1805 aa34.57■■■■□ 3.12
PKNOX1-202ENST00000418336 UACAQ9BZF9 1416 aa34.55■■■■□ 3.12
PKNOX1-202ENST00000418336 GOLGA3Q08378 1498 aa34.54■■■■□ 3.12
PKNOX1-202ENST00000418336 ABCC2Q92887 1545 aa34.54■■■■□ 3.12
PKNOX1-202ENST00000418336 TTBK1Q5TCY1 1321 aaPredicted RBP34.52■■■■□ 3.12
PKNOX1-202ENST00000418336 ABCC10Q5T3U5 1492 aa34.49■■■■□ 3.11
PKNOX1-202ENST00000418336 SAMD9Q5K651 1589 aa34.48■■■■□ 3.11
PKNOX1-202ENST00000418336 DIP2BQ9P265 1576 aa34.45■■■■□ 3.11
PKNOX1-202ENST00000418336 NPM1P06748 294 aaKnown RBP eCLIP34.45■■■■□ 3.11
PKNOX1-202ENST00000418336 KDM5BQ9UGL1 1544 aa34.44■■■■□ 3.1
PKNOX1-202ENST00000418336 ABCA8O94911 1581 aa34.42■■■■□ 3.1
PKNOX1-202ENST00000418336 PLB1Q6P1J6 1458 aa34.42■■■■□ 3.1
PKNOX1-202ENST00000418336 ZCCHC11Q5TAX3 1644 aaKnown RBP34.34■■■■□ 3.09
PKNOX1-202ENST00000418336 ASXL2Q76L83 1435 aa34.33■■■■□ 3.09
PKNOX1-202ENST00000418336 FAM69CQ0P6D2 419 aa34.3■■■■□ 3.08
PKNOX1-202ENST00000418336 P3H3Q8IVL6 736 aa34.26■■■■□ 3.08
PKNOX1-202ENST00000418336 GLI2P10070 1586 aa34.22■■■■□ 3.07
PKNOX1-202ENST00000418336 FHOD3Q2V2M9 1422 aa34.18■■■■□ 3.06
PKNOX1-202ENST00000418336 EFCAB5A4FU69 1503 aa34.18■■■■□ 3.06
PKNOX1-202ENST00000418336 EPRSP07814 1512 aaKnown RBP34.16■■■■□ 3.06
PKNOX1-202ENST00000418336 PPRC1Q5VV67 1664 aaKnown RBP34.12■■■■□ 3.05
PKNOX1-202ENST00000418336 RAPGEF6Q8TEU7 1601 aa34.12■■■■□ 3.05
PKNOX1-202ENST00000418336 EHMT2Q96KQ7 1210 aa34.11■■■■□ 3.05
PKNOX1-202ENST00000418336 WDR7Q9Y4E6 1490 aa34.11■■■■□ 3.05
PKNOX1-202ENST00000418336 ATP10BO94823 1461 aa34.1■■■■□ 3.05
PKNOX1-202ENST00000418336 RANGAP1P46060 587 aaPredicted RBP34.1■■■■□ 3.05
PKNOX1-202ENST00000418336 UBTFP17480 764 aaKnown RBP34.07■■■■□ 3.04
PKNOX1-202ENST00000418336 MAP3K4Q9Y6R4 1608 aa34.06■■■■□ 3.04
PKNOX1-202ENST00000418336 NUP153P49790 1475 aaKnown RBP34.05■■■■□ 3.04
PKNOX1-202ENST00000418336 TSPOAP1O95153 1857 aa34.05■■■■□ 3.04
PKNOX1-202ENST00000418336 ARHGAP35Q9NRY4 1499 aa34.04■■■■□ 3.04
PKNOX1-202ENST00000418336 ARID3CA6NKF2 412 aa33.94■■■■□ 3.02
PKNOX1-202ENST00000418336 KDM6BO15054 1643 aa33.86■■■■□ 3.01
PKNOX1-202ENST00000418336 CFAP43Q8NDM7 1665 aa33.86■■■■□ 3.01
PKNOX1-202ENST00000418336 FMN1Q68DA7 1419 aa33.81■■■■□ 3
PKNOX1-202ENST00000418336 MAGI3Q5TCQ9 1506 aa33.81■■■■□ 3
PKNOX1-202ENST00000418336 KCNH8Q96L42 1107 aa33.81■■■■□ 3
PKNOX1-202ENST00000418336 COL17A1Q9UMD9 1497 aaPredicted RBP33.81■■■■□ 3
PKNOX1-202ENST00000418336 ABCA9Q8IUA7 1624 aa33.79■■■■□ 3
PKNOX1-202ENST00000418336 CD109Q6YHK3 1445 aa33.78■■■■□ 3
PKNOX1-202ENST00000418336 TEX14Q8IWB6 1497 aa33.76■■■■□ 3
PKNOX1-202ENST00000418336 CDK13Q14004 1512 aaKnown RBP33.75■■■□□ 2.99
PKNOX1-202ENST00000418336 HECW1Q76N89 1606 aa33.71■■■□□ 2.99
PKNOX1-202ENST00000418336 LRRIQ1Q96JM4 1722 aa33.69■■■□□ 2.98
PKNOX1-202ENST00000418336 CLIP1P30622 1438 aa33.65■■■□□ 2.98
PKNOX1-202ENST00000418336 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP33.64■■■□□ 2.98
PKNOX1-202ENST00000418336 HNRNPUL2Q1KMD3 747 aaKnown RBP33.64■■■□□ 2.98
PKNOX1-202ENST00000418336 PCF11O94913 1555 aaKnown RBP33.62■■■□□ 2.97
PKNOX1-202ENST00000418336 PLEKHD1A6NEE1 506 aa33.6■■■□□ 2.97
PKNOX1-202ENST00000418336 CASKIN1Q8WXD9 1431 aa33.6■■■□□ 2.97
PKNOX1-202ENST00000418336 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP33.59■■■□□ 2.973e-7■■■■□ 21.7
PKNOX1-202ENST00000418336 TTC37Q6PGP7 1564 aa33.55■■■□□ 2.96
PKNOX1-202ENST00000418336 ARAP3Q8WWN8 1544 aa33.53■■■□□ 2.96
PKNOX1-202ENST00000418336 FYCO1Q9BQS8 1478 aa33.49■■■□□ 2.95
PKNOX1-202ENST00000418336 NEO1Q92859 1461 aa33.48■■■□□ 2.95
PKNOX1-202ENST00000418336 CEP162Q5TB80 1403 aa33.47■■■□□ 2.95
PKNOX1-202ENST00000418336 ATP1B4Q9UN42 357 aaPredicted RBP33.46■■■□□ 2.95
PKNOX1-202ENST00000418336 KIF14Q15058 1648 aa33.44■■■□□ 2.94
PKNOX1-202ENST00000418336 PHLDB1Q86UU1 1377 aa33.44■■■□□ 2.94
PKNOX1-202ENST00000418336 TROQ12816 1431 aaPredicted RBP33.44■■■□□ 2.94
PKNOX1-202ENST00000418336 LOC105371045A0A1W2PR82 267 aa33.43■■■□□ 2.94
PKNOX1-202ENST00000418336 CCDC18Q5T9S5 1454 aa33.43■■■□□ 2.94
PKNOX1-202ENST00000418336 FRMPD1Q5SYB0 1578 aa33.39■■■□□ 2.94
PKNOX1-202ENST00000418336 PLCH2O75038 1416 aa33.36■■■□□ 2.93
PKNOX1-202ENST00000418336 FANCAO15360 1455 aa33.34■■■□□ 2.93
PKNOX1-202ENST00000418336 CDK11AQ9UQ88 783 aaPredicted RBP33.34■■■□□ 2.93
PKNOX1-202ENST00000418336 AKNAQ7Z591 1439 aa33.31■■■□□ 2.92
PKNOX1-202ENST00000418336 CFAP74Q9C0B2 1584 aa33.3■■■□□ 2.92
PKNOX1-202ENST00000418336 KDM4FA0A1W2PPD8 638 aa33.29■■■□□ 2.92
PKNOX1-202ENST00000418336 MYO5CQ9NQX4 1742 aa33.28■■■□□ 2.92
PKNOX1-202ENST00000418336 RAPGEF3O95398 923 aa33.27■■■□□ 2.92
PKNOX1-202ENST00000418336 RICTORQ6R327 1708 aa33.27■■■□□ 2.92
PKNOX1-202ENST00000418336 AEBP2Q6ZN18 517 aaPredicted RBP33.26■■■□□ 2.91
PKNOX1-202ENST00000418336 DENND4BO75064 1496 aaPredicted RBP33.2■■■□□ 2.91
PKNOX1-202ENST00000418336 CDC42BPBQ9Y5S2 1711 aa33.19■■■□□ 2.9
PKNOX1-202ENST00000418336 ADGRL1O94910 1474 aa33.16■■■□□ 2.9
PKNOX1-202ENST00000418336 PREX2Q70Z35 1606 aa33.16■■■□□ 2.9
PKNOX1-202ENST00000418336 ZMYM4Q5VZL5 1548 aa33.14■■■□□ 2.9
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms