RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 CEP170Q5SW79 1584 aa10.78□□□□□ -0.68
USP54-202ENST00000413442 ARAP1Q96P48 1450 aa10.76□□□□□ -0.69
USP54-202ENST00000413442 EEA1Q15075 1411 aa10.75□□□□□ -0.69
USP54-202ENST00000413442 RAPGEF2Q9Y4G8 1499 aa10.74□□□□□ -0.69
USP54-202ENST00000413442 PRG4Q92954 1404 aaPredicted RBP10.72□□□□□ -0.69
USP54-202ENST00000413442 CARMIL2Q6F5E8 1435 aa10.71□□□□□ -0.69
USP54-202ENST00000413442 FAM9AQ8IZU1 332 aaPredicted RBP10.71□□□□□ -0.69
USP54-202ENST00000413442 RUSC2Q8N2Y8 1516 aa10.71□□□□□ -0.69
USP54-202ENST00000413442 NPM1P06748 294 aaKnown RBP eCLIP10.69□□□□□ -0.7
USP54-202ENST00000413442 CSRNP3Q8WYN3 585 aa10.69□□□□□ -0.7
USP54-202ENST00000413442 IQGAP2Q13576 1575 aa10.66□□□□□ -0.7
USP54-202ENST00000413442 PRXQ9BXM0 1461 aa10.66□□□□□ -0.7
USP54-202ENST00000413442 TRHP20396 242 aaPredicted RBP10.64□□□□□ -0.71
USP54-202ENST00000413442 TNIKQ9UKE5 1360 aa10.64□□□□□ -0.71
USP54-202ENST00000413442 GOLGA3Q08378 1498 aa10.63□□□□□ -0.71
USP54-202ENST00000413442 PTPRGP23470 1445 aa10.63□□□□□ -0.71
USP54-202ENST00000413442 ERCC6L2Q5T890 1561 aa10.63□□□□□ -0.71
USP54-202ENST00000413442 UGGT2Q9NYU1 1516 aa10.63□□□□□ -0.71
USP54-202ENST00000413442 CTTNBP2Q8WZ74 1663 aa10.61□□□□□ -0.71
USP54-202ENST00000413442 UHRF1BP1LA0JNW5 1464 aa10.58□□□□□ -0.72
USP54-202ENST00000413442 MAPKBP1O60336 1514 aa10.57□□□□□ -0.72
USP54-202ENST00000413442 DISP1Q96F81 1524 aa10.56□□□□□ -0.72
USP54-202ENST00000413442 UACAQ9BZF9 1416 aa10.55□□□□□ -0.72
USP54-202ENST00000413442 KIF21BO75037 1637 aa10.54□□□□□ -0.72
USP54-202ENST00000413442 KIAA0556O60303 1618 aa10.53□□□□□ -0.72
USP54-202ENST00000413442 ABCC2Q92887 1545 aa10.53□□□□□ -0.72
USP54-202ENST00000413442 ADCY10Q96PN6 1610 aa10.52□□□□□ -0.73
USP54-202ENST00000413442 ABCC10Q5T3U5 1492 aa10.51□□□□□ -0.73
USP54-202ENST00000413442 PLB1Q6P1J6 1458 aa10.51□□□□□ -0.73
USP54-202ENST00000413442 SENP3Q9H4L4 574 aaPredicted RBP10.51□□□□□ -0.73
USP54-202ENST00000413442 KDM5BQ9UGL1 1544 aa10.49□□□□□ -0.73
USP54-202ENST00000413442 FAM69CQ0P6D2 419 aa10.48□□□□□ -0.73
USP54-202ENST00000413442 KIF13AQ9H1H9 1805 aa10.47□□□□□ -0.73
USP54-202ENST00000413442 UBTFP17480 764 aaKnown RBP10.46□□□□□ -0.73
USP54-202ENST00000413442 EFCAB5A4FU69 1503 aa10.46□□□□□ -0.74
USP54-202ENST00000413442 SAMD9Q5K651 1589 aa10.46□□□□□ -0.74
USP54-202ENST00000413442 GLI2P10070 1586 aa10.45□□□□□ -0.74
USP54-202ENST00000413442 ABCA8O94911 1581 aa10.44□□□□□ -0.74
USP54-202ENST00000413442 ASXL2Q76L83 1435 aa10.43□□□□□ -0.74
USP54-202ENST00000413442 TTBK1Q5TCY1 1321 aaPredicted RBP10.43□□□□□ -0.74
USP54-202ENST00000413442 DIP2BQ9P265 1576 aa10.43□□□□□ -0.74
USP54-202ENST00000413442 ZCCHC11Q5TAX3 1644 aaKnown RBP10.4□□□□□ -0.74
USP54-202ENST00000413442 FMN1Q68DA7 1419 aa10.4□□□□□ -0.75
USP54-202ENST00000413442 P3H3Q8IVL6 736 aa10.39□□□□□ -0.75
USP54-202ENST00000413442 TEX14Q8IWB6 1497 aa10.38□□□□□ -0.75
USP54-202ENST00000413442 WDR7Q9Y4E6 1490 aa10.38□□□□□ -0.75
USP54-202ENST00000413442 RAPGEF6Q8TEU7 1601 aa10.38□□□□□ -0.75
USP54-202ENST00000413442 PHLDB1Q86UU1 1377 aa10.38□□□□□ -0.75
USP54-202ENST00000413442 EPRSP07814 1512 aaKnown RBP10.38□□□□□ -0.75
USP54-202ENST00000413442 ATP10BO94823 1461 aa10.37□□□□□ -0.75
USP54-202ENST00000413442 PLEKHD1A6NEE1 506 aa10.37□□□□□ -0.75
USP54-202ENST00000413442 CDK11AQ9UQ88 783 aaPredicted RBP10.37□□□□□ -0.75
USP54-202ENST00000413442 PHF23Q9BUL5 403 aaPredicted RBP10.36□□□□□ -0.75
USP54-202ENST00000413442 CFAP43Q8NDM7 1665 aa10.35□□□□□ -0.75
USP54-202ENST00000413442 MAP3K4Q9Y6R4 1608 aa10.35□□□□□ -0.75
USP54-202ENST00000413442 MAGI3Q5TCQ9 1506 aa10.33□□□□□ -0.76
USP54-202ENST00000413442 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.33□□□□□ -0.76
USP54-202ENST00000413442 HNRNPUL2Q1KMD3 747 aaKnown RBP10.33□□□□□ -0.76
USP54-202ENST00000413442 CD109Q6YHK3 1445 aa10.33□□□□□ -0.76
USP54-202ENST00000413442 TSPOAP1O95153 1857 aa10.32□□□□□ -0.76
USP54-202ENST00000413442 KCNH8Q96L42 1107 aa10.32□□□□□ -0.76
USP54-202ENST00000413442 FHOD3Q2V2M9 1422 aa10.32□□□□□ -0.76
USP54-202ENST00000413442 RANGAP1P46060 587 aaPredicted RBP10.31□□□□□ -0.76
USP54-202ENST00000413442 KDM6BO15054 1643 aa10.31□□□□□ -0.76
USP54-202ENST00000413442 NUP153P49790 1475 aaKnown RBP10.3□□□□□ -0.76
USP54-202ENST00000413442 ARHGAP35Q9NRY4 1499 aa10.3□□□□□ -0.76
USP54-202ENST00000413442 ABCA9Q8IUA7 1624 aa10.29□□□□□ -0.76
USP54-202ENST00000413442 PPRC1Q5VV67 1664 aaKnown RBP10.28□□□□□ -0.76
USP54-202ENST00000413442 HECW1Q76N89 1606 aa10.28□□□□□ -0.76
USP54-202ENST00000413442 NEO1Q92859 1461 aa10.26□□□□□ -0.77
USP54-202ENST00000413442 ARAP3Q8WWN8 1544 aa10.26□□□□□ -0.77
USP54-202ENST00000413442 CLIP1P30622 1438 aa10.25□□□□□ -0.77
USP54-202ENST00000413442 CASKIN1Q8WXD9 1431 aa10.25□□□□□ -0.77
USP54-202ENST00000413442 CCDC18Q5T9S5 1454 aa10.25□□□□□ -0.77
USP54-202ENST00000413442 ATP1B4Q9UN42 357 aaPredicted RBP10.24□□□□□ -0.77
USP54-202ENST00000413442 EHMT2Q96KQ7 1210 aa10.23□□□□□ -0.77
USP54-202ENST00000413442 CFAP74Q9C0B2 1584 aa10.22□□□□□ -0.77
USP54-202ENST00000413442 FYCO1Q9BQS8 1478 aa10.22□□□□□ -0.77
USP54-202ENST00000413442 ARID3CA6NKF2 412 aa10.21□□□□□ -0.77
USP54-202ENST00000413442 EFCAB2Q5VUJ9 269 aa10.21□□□□□ -0.77
USP54-202ENST00000413442 PLCH2O75038 1416 aa10.2□□□□□ -0.78
USP54-202ENST00000413442 TROQ12816 1431 aaPredicted RBP10.2□□□□□ -0.78
USP54-202ENST00000413442 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.18□□□□□ -0.78
USP54-202ENST00000413442 COL17A1Q9UMD9 1497 aaPredicted RBP10.18□□□□□ -0.78
USP54-202ENST00000413442 AKNAQ7Z591 1439 aa10.17□□□□□ -0.78
USP54-202ENST00000413442 KIF14Q15058 1648 aa10.17□□□□□ -0.78
USP54-202ENST00000413442 FANCAO15360 1455 aa10.17□□□□□ -0.78
USP54-202ENST00000413442 CEP162Q5TB80 1403 aa10.16□□□□□ -0.78
USP54-202ENST00000413442 CDK13Q14004 1512 aaKnown RBP10.16□□□□□ -0.78
USP54-202ENST00000413442 MAGI2Q86UL8 1455 aa10.16□□□□□ -0.78
USP54-202ENST00000413442 MYO5CQ9NQX4 1742 aa10.16□□□□□ -0.78
USP54-202ENST00000413442 DENND4BO75064 1496 aaPredicted RBP10.15□□□□□ -0.78
USP54-202ENST00000413442 LRRIQ1Q96JM4 1722 aa10.13□□□□□ -0.79
USP54-202ENST00000413442 PCF11O94913 1555 aaKnown RBP10.13□□□□□ -0.79
USP54-202ENST00000413442 MTUS2Q5JR59 1369 aa10.12□□□□□ -0.79
USP54-202ENST00000413442 MAP3K1Q13233 1512 aa10.12□□□□□ -0.79
USP54-202ENST00000413442 TTC37Q6PGP7 1564 aa10.11□□□□□ -0.79
USP54-202ENST00000413442 LOC105371045A0A1W2PR82 267 aa10.11□□□□□ -0.79
USP54-202ENST00000413442 RSPH4AQ5TD94 716 aa10.11□□□□□ -0.79
USP54-202ENST00000413442 SCAPERQ9BY12 1400 aa10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms