RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 NISCHQ9Y2I1 1504 aa15.5■□□□□ 0.07
USP54-202ENST00000413442 CCDC180Q9P1Z9 1646 aa13.87□□□□□ -0.19
USP54-202ENST00000413442 ABCC9O60706 1549 aa13.47□□□□□ -0.25
USP54-202ENST00000413442 RB1CC1Q8TDY2 1594 aa13.08□□□□□ -0.32
USP54-202ENST00000413442 NACADO15069 1562 aa13.07□□□□□ -0.32
USP54-202ENST00000413442 MYO15BQ96JP2 1530 aa13.05□□□□□ -0.32
USP54-202ENST00000413442 DCAF8L2P0C7V8 631 aa12.93□□□□□ -0.34
USP54-202ENST00000413442 DCAF1Q9Y4B6 1507 aa12.93□□□□□ -0.34
USP54-202ENST00000413442 ZCCHC6Q5VYS8 1495 aaKnown RBP12.86□□□□□ -0.35
USP54-202ENST00000413442 UNC13AQ9UPW8 1703 aa12.69□□□□□ -0.38
USP54-202ENST00000413442 SHROOM4Q9ULL8 1493 aa12.64□□□□□ -0.39
USP54-202ENST00000413442 BICRAQ9NZM4 1560 aa12.58□□□□□ -0.4
USP54-202ENST00000413442 PABPN1Q86U42 306 aaKnown RBP eCLIP12.57□□□□□ -0.4
USP54-202ENST00000413442 SCRIBQ14160 1630 aa12.48□□□□□ -0.41
USP54-202ENST00000413442 DNAJC5BQ9UF47 199 aa12.41□□□□□ -0.42
USP54-202ENST00000413442 EIF4G1Q04637 1599 aaKnown RBP12.28□□□□□ -0.44
USP54-202ENST00000413442 AEBP2Q6ZN18 517 aaPredicted RBP12.26□□□□□ -0.45
USP54-202ENST00000413442 CC2D2AQ9P2K1 1620 aa12.24□□□□□ -0.45
USP54-202ENST00000413442 CECR2Q9BXF3 1484 aa12.17□□□□□ -0.46
USP54-202ENST00000413442 NCAPD3P42695 1498 aa12.06□□□□□ -0.48
USP54-202ENST00000413442 BAZ1AQ9NRL2 1556 aaPredicted RBP12.05□□□□□ -0.48
USP54-202ENST00000413442 SMARCA2P51531 1590 aa12.03□□□□□ -0.48
USP54-202ENST00000413442 SMARCA4P51532 1647 aa12.01□□□□□ -0.49
USP54-202ENST00000413442 ATAD2BQ9ULI0 1458 aa11.98□□□□□ -0.49
USP54-202ENST00000413442 PEG3Q9GZU2 1588 aa11.97□□□□□ -0.49
USP54-202ENST00000413442 HMGXB3Q12766 1538 aa11.96□□□□□ -0.5
USP54-202ENST00000413442 BAZ1BQ9UIG0 1483 aaKnown RBP11.88□□□□□ -0.51
USP54-202ENST00000413442 MROH2BQ7Z745 1585 aa11.87□□□□□ -0.51
USP54-202ENST00000413442 RSF1Q96T23 1441 aaPredicted RBP11.76□□□□□ -0.53
USP54-202ENST00000413442 LAMC3Q9Y6N6 1575 aa11.75□□□□□ -0.53
USP54-202ENST00000413442 WIZO95785 1651 aa11.73□□□□□ -0.53
USP54-202ENST00000413442 PDS5BQ9NTI5 1447 aa11.69□□□□□ -0.54
USP54-202ENST00000413442 CADPSQ9ULU8 1353 aa11.68□□□□□ -0.54
USP54-202ENST00000413442 ERCC6Q03468 1493 aa11.68□□□□□ -0.54
USP54-202ENST00000413442 TOP2AP11388 1531 aaKnown RBP11.66□□□□□ -0.54
USP54-202ENST00000413442 CUX2O14529 1486 aa11.66□□□□□ -0.54
USP54-202ENST00000413442 NESP48681 1621 aa11.61□□□□□ -0.55
USP54-202ENST00000413442 CFTRP13569 1480 aa11.58□□□□□ -0.56
USP54-202ENST00000413442 KIF21AQ7Z4S6 1674 aa11.52□□□□□ -0.57
USP54-202ENST00000413442 CCDC88BA6NC98 1476 aa11.51□□□□□ -0.57
USP54-202ENST00000413442 PRDM2Q13029 1718 aa11.5□□□□□ -0.57
USP54-202ENST00000413442 CHIC1Q5VXU3 224 aa11.5□□□□□ -0.57
USP54-202ENST00000413442 CEP164Q9UPV0 1460 aa11.5□□□□□ -0.57
USP54-202ENST00000413442 THOC2Q8NI27 1593 aaKnown RBP11.5□□□□□ -0.57
USP54-202ENST00000413442 FANCD2Q9BXW9 1451 aa11.49□□□□□ -0.57
USP54-202ENST00000413442 MRC2Q9UBG0 1479 aa11.49□□□□□ -0.57
USP54-202ENST00000413442 ABCC8Q09428 1581 aa11.45□□□□□ -0.58
USP54-202ENST00000413442 WDR62O43379 1518 aa11.45□□□□□ -0.58
USP54-202ENST00000413442 DNAJC5Q9H3Z4 198 aa11.38□□□□□ -0.59
USP54-202ENST00000413442 SUPT5HO00267 1087 aaKnown RBP11.36□□□□□ -0.59
USP54-202ENST00000413442 URB2Q14146 1524 aaKnown RBP11.33□□□□□ -0.6
USP54-202ENST00000413442 IFT140Q96RY7 1462 aa11.3□□□□□ -0.6
USP54-202ENST00000413442 DNMBPQ6XZF7 1577 aa11.29□□□□□ -0.6
USP54-202ENST00000413442 TOPBP1Q92547 1522 aa11.29□□□□□ -0.6
USP54-202ENST00000413442 WDR97A6NE52 1622 aa11.22□□□□□ -0.61
USP54-202ENST00000413442 OSCARQ8IYS5 282 aa11.21□□□□□ -0.61
USP54-202ENST00000413442 SOGA1O94964 1423 aa11.19□□□□□ -0.62
USP54-202ENST00000413442 TARBP1Q13395 1621 aaKnown RBP11.18□□□□□ -0.62
USP54-202ENST00000413442 POLA1P09884 1462 aaPredicted RBP11.18□□□□□ -0.62
USP54-202ENST00000413442 CUX1P39880 1505 aa11.14□□□□□ -0.63
USP54-202ENST00000413442 FGD5Q6ZNL6 1462 aa11.12□□□□□ -0.63
USP54-202ENST00000413442 ZNF608Q9ULD9 1512 aaPredicted RBP11.12□□□□□ -0.63
USP54-202ENST00000413442 WRNQ14191 1432 aaPredicted RBP eCLIP11.11□□□□□ -0.63
USP54-202ENST00000413442 TOP2BQ02880 1626 aa11.1□□□□□ -0.63
USP54-202ENST00000413442 EIF4G3O43432 1585 aaKnown RBP11.1□□□□□ -0.63
USP54-202ENST00000413442 BIVM-ERCC5R4GMW8 1640 aa11.09□□□□□ -0.63
USP54-202ENST00000413442 AQRO60306 1485 aaKnown RBP eCLIP11.09□□□□□ -0.632e-6■■■□□ 15.2
USP54-202ENST00000413442 ABCA10Q8WWZ4 1543 aa11.09□□□□□ -0.63
USP54-202ENST00000413442 RAD54L2Q9Y4B4 1467 aa11.08□□□□□ -0.64
USP54-202ENST00000413442 GRIN2BQ13224 1484 aa11.07□□□□□ -0.64
USP54-202ENST00000413442 MAGI1Q96QZ7 1491 aaPredicted RBP11.06□□□□□ -0.64
USP54-202ENST00000413442 TDRD9Q8NDG6 1382 aaKnown RBP11.06□□□□□ -0.64
USP54-202ENST00000413442 GAPVD1Q14C86 1478 aa11.05□□□□□ -0.64
USP54-202ENST00000413442 CHMP7Q8WUX9 453 aaPredicted RBP11.03□□□□□ -0.64
USP54-202ENST00000413442 SYNJ2O15056 1496 aa11□□□□□ -0.65
USP54-202ENST00000413442 ABCA5Q8WWZ7 1642 aa11□□□□□ -0.65
USP54-202ENST00000413442 FBLN2P98095 1184 aa11□□□□□ -0.65
USP54-202ENST00000413442 SYNJ1O43426 1573 aa10.99□□□□□ -0.65
USP54-202ENST00000413442 PBRM1Q86U86 1689 aa10.98□□□□□ -0.65
USP54-202ENST00000413442 CHD1O14646 1710 aa10.98□□□□□ -0.65
USP54-202ENST00000413442 SNAPC4Q5SXM2 1469 aa10.98□□□□□ -0.65
USP54-202ENST00000413442 ERICH3Q5RHP9 1530 aa10.98□□□□□ -0.65
USP54-202ENST00000413442 FHAD1B1AJZ9 1412 aa10.94□□□□□ -0.66
USP54-202ENST00000413442 KIF27Q86VH2 1401 aa10.92□□□□□ -0.66
USP54-202ENST00000413442 ARHGEF11O15085 1522 aa10.89□□□□□ -0.67
USP54-202ENST00000413442 GRIN2AQ12879 1464 aa10.89□□□□□ -0.67
USP54-202ENST00000413442 RIMBP3CA6NJZ7 1639 aa10.89□□□□□ -0.67
USP54-202ENST00000413442 RIMBP3BA6NNM3 1639 aa10.89□□□□□ -0.67
USP54-202ENST00000413442 RIMBP3Q9UFD9 1639 aa10.89□□□□□ -0.67
USP54-202ENST00000413442 CLASP1Q7Z460 1538 aa10.89□□□□□ -0.67
USP54-202ENST00000413442 ADAMTS12P58397 1594 aa10.87□□□□□ -0.67
USP54-202ENST00000413442 IGF1RP08069 1367 aa10.87□□□□□ -0.67
USP54-202ENST00000413442 CUL7Q14999 1698 aa10.86□□□□□ -0.67
USP54-202ENST00000413442 NUP160Q12769 1436 aa10.86□□□□□ -0.67
USP54-202ENST00000413442 TRIM41Q8WV44 630 aa10.84□□□□□ -0.67
USP54-202ENST00000413442 CYB5RLQ6IPT4 315 aa10.83□□□□□ -0.68
USP54-202ENST00000413442 CARMIL1Q5VZK9 1371 aa10.81□□□□□ -0.68
USP54-202ENST00000413442 JPH4Q96JJ6 628 aa10.81□□□□□ -0.68
USP54-202ENST00000413442 SHROOM2Q13796 1616 aa10.79□□□□□ -0.68
USP54-202ENST00000413442 KIAA0586Q9BVV6 1533 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 85.7 ms