RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 JPH4Q96JJ6 628 aa32.71■■■□□ 2.83
SF3A1-202ENST00000411423 PRG4Q92954 1404 aaPredicted RBP32.7■■■□□ 2.83
SF3A1-202ENST00000411423 KIAA0586Q9BVV6 1533 aa32.65■■■□□ 2.82
SF3A1-202ENST00000411423 TRHP20396 242 aaPredicted RBP32.51■■■□□ 2.79
SF3A1-202ENST00000411423 RAPGEF2Q9Y4G8 1499 aa32.5■■■□□ 2.79
SF3A1-202ENST00000411423 IQGAP2Q13576 1575 aa32.41■■■□□ 2.78
SF3A1-202ENST00000411423 PRXQ9BXM0 1461 aa32.35■■■□□ 2.77
SF3A1-202ENST00000411423 ADCY10Q96PN6 1610 aa32.3■■■□□ 2.76
SF3A1-202ENST00000411423 DISP1Q96F81 1524 aa32.29■■■□□ 2.76
SF3A1-202ENST00000411423 UGGT2Q9NYU1 1516 aa32.25■■■□□ 2.75
SF3A1-202ENST00000411423 PTPRGP23470 1445 aa32.23■■■□□ 2.75
SF3A1-202ENST00000411423 CARMIL2Q6F5E8 1435 aa32.23■■■□□ 2.75
SF3A1-202ENST00000411423 TNIKQ9UKE5 1360 aa32.22■■■□□ 2.75
SF3A1-202ENST00000411423 CTTNBP2Q8WZ74 1663 aa32.21■■■□□ 2.75
SF3A1-202ENST00000411423 TTBK1Q5TCY1 1321 aaPredicted RBP32.21■■■□□ 2.75
SF3A1-202ENST00000411423 CSRNP3Q8WYN3 585 aa32.18■■■□□ 2.74
SF3A1-202ENST00000411423 KIAA0556O60303 1618 aa32.15■■■□□ 2.74
SF3A1-202ENST00000411423 CHIC1Q5VXU3 224 aa32.13■■■□□ 2.73
SF3A1-202ENST00000411423 KIF13AQ9H1H9 1805 aa32.1■■■□□ 2.73
SF3A1-202ENST00000411423 MAPKBP1O60336 1514 aa32.1■■■□□ 2.73
SF3A1-202ENST00000411423 EEA1Q15075 1411 aa32.09■■■□□ 2.73
SF3A1-202ENST00000411423 NPM1P06748 294 aaKnown RBP eCLIP32.06■■■□□ 2.72
SF3A1-202ENST00000411423 FAM9AQ8IZU1 332 aaPredicted RBP32.06■■■□□ 2.72
SF3A1-202ENST00000411423 UACAQ9BZF9 1416 aa32.01■■■□□ 2.72
SF3A1-202ENST00000411423 UHRF1BP1LA0JNW5 1464 aa32.01■■■□□ 2.71
SF3A1-202ENST00000411423 ABCC10Q5T3U5 1492 aa32.01■■■□□ 2.71
SF3A1-202ENST00000411423 ABCC2Q92887 1545 aa32■■■□□ 2.71
SF3A1-202ENST00000411423 DIP2BQ9P265 1576 aa31.98■■■□□ 2.71
SF3A1-202ENST00000411423 GOLGA3Q08378 1498 aa31.94■■■□□ 2.7
SF3A1-202ENST00000411423 FAM69CQ0P6D2 419 aa31.93■■■□□ 2.7
SF3A1-202ENST00000411423 PLB1Q6P1J6 1458 aa31.91■■■□□ 2.7
SF3A1-202ENST00000411423 KDM5BQ9UGL1 1544 aa31.88■■■□□ 2.69
SF3A1-202ENST00000411423 KIF21BO75037 1637 aa31.87■■■□□ 2.69
SF3A1-202ENST00000411423 ASXL2Q76L83 1435 aa31.85■■■□□ 2.69
SF3A1-202ENST00000411423 P3H3Q8IVL6 736 aa31.84■■■□□ 2.69
SF3A1-202ENST00000411423 ABCA8O94911 1581 aa31.84■■■□□ 2.69
SF3A1-202ENST00000411423 ZCCHC11Q5TAX3 1644 aaKnown RBP31.83■■■□□ 2.69
SF3A1-202ENST00000411423 SAMD9Q5K651 1589 aa31.83■■■□□ 2.69
SF3A1-202ENST00000411423 RANGAP1P46060 587 aaPredicted RBP31.72■■■□□ 2.67
SF3A1-202ENST00000411423 EHMT2Q96KQ7 1210 aa31.72■■■□□ 2.67
SF3A1-202ENST00000411423 TSPOAP1O95153 1857 aa31.7■■■□□ 2.67
SF3A1-202ENST00000411423 GLI2P10070 1586 aa31.69■■■□□ 2.66
SF3A1-202ENST00000411423 EPRSP07814 1512 aaKnown RBP31.68■■■□□ 2.66
SF3A1-202ENST00000411423 FHOD3Q2V2M9 1422 aa31.65■■■□□ 2.66
SF3A1-202ENST00000411423 PPRC1Q5VV67 1664 aaKnown RBP31.64■■■□□ 2.66
SF3A1-202ENST00000411423 WDR7Q9Y4E6 1490 aa31.61■■■□□ 2.65
SF3A1-202ENST00000411423 ARID3CA6NKF2 412 aa31.59■■■□□ 2.65
SF3A1-202ENST00000411423 ATP10BO94823 1461 aa31.58■■■□□ 2.65
SF3A1-202ENST00000411423 RAPGEF6Q8TEU7 1601 aa31.57■■■□□ 2.64
SF3A1-202ENST00000411423 MAP3K4Q9Y6R4 1608 aa31.57■■■□□ 2.64
SF3A1-202ENST00000411423 UBTFP17480 764 aaKnown RBP31.55■■■□□ 2.64
SF3A1-202ENST00000411423 EFCAB5A4FU69 1503 aa31.54■■■□□ 2.64
SF3A1-202ENST00000411423 KDM6BO15054 1643 aa31.51■■■□□ 2.63
SF3A1-202ENST00000411423 NUP153P49790 1475 aaKnown RBP31.49■■■□□ 2.63
SF3A1-202ENST00000411423 KCNH8Q96L42 1107 aa31.46■■■□□ 2.63
SF3A1-202ENST00000411423 ARHGAP35Q9NRY4 1499 aa31.43■■■□□ 2.62
SF3A1-202ENST00000411423 COL17A1Q9UMD9 1497 aaPredicted RBP31.4■■■□□ 2.62
SF3A1-202ENST00000411423 CFAP43Q8NDM7 1665 aa31.37■■■□□ 2.61
SF3A1-202ENST00000411423 CD109Q6YHK3 1445 aa31.35■■■□□ 2.61
SF3A1-202ENST00000411423 TEX14Q8IWB6 1497 aa31.33■■■□□ 2.61
SF3A1-202ENST00000411423 MAGI3Q5TCQ9 1506 aa31.32■■■□□ 2.6
SF3A1-202ENST00000411423 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP31.3■■■□□ 2.6
SF3A1-202ENST00000411423 HNRNPUL2Q1KMD3 747 aaKnown RBP31.3■■■□□ 2.6
SF3A1-202ENST00000411423 ABCA9Q8IUA7 1624 aa31.27■■■□□ 2.6
SF3A1-202ENST00000411423 CDK13Q14004 1512 aaKnown RBP31.26■■■□□ 2.59
SF3A1-202ENST00000411423 FMN1Q68DA7 1419 aa31.23■■■□□ 2.59
SF3A1-202ENST00000411423 HECW1Q76N89 1606 aa31.16■■■□□ 2.58
SF3A1-202ENST00000411423 PLEKHD1A6NEE1 506 aa31.15■■■□□ 2.58
SF3A1-202ENST00000411423 LRRIQ1Q96JM4 1722 aa31.12■■■□□ 2.57
SF3A1-202ENST00000411423 ATP1B4Q9UN42 357 aaPredicted RBP31.12■■■□□ 2.57
SF3A1-202ENST00000411423 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP31.1■■■□□ 2.57
SF3A1-202ENST00000411423 TTC37Q6PGP7 1564 aa31.07■■■□□ 2.56
SF3A1-202ENST00000411423 PCF11O94913 1555 aaKnown RBP31.06■■■□□ 2.56
SF3A1-202ENST00000411423 AEBP2Q6ZN18 517 aaPredicted RBP31.06■■■□□ 2.56
SF3A1-202ENST00000411423 CLIP1P30622 1438 aa31.06■■■□□ 2.56
SF3A1-202ENST00000411423 ARAP3Q8WWN8 1544 aa31.05■■■□□ 2.56
SF3A1-202ENST00000411423 KDM4FA0A1W2PPD8 638 aa31.04■■■□□ 2.56
SF3A1-202ENST00000411423 CASKIN1Q8WXD9 1431 aa31■■■□□ 2.55
SF3A1-202ENST00000411423 NEO1Q92859 1461 aa31■■■□□ 2.55
SF3A1-202ENST00000411423 KIF14Q15058 1648 aa30.95■■■□□ 2.55
SF3A1-202ENST00000411423 PHLDB1Q86UU1 1377 aa30.95■■■□□ 2.55
SF3A1-202ENST00000411423 FRMPD1Q5SYB0 1578 aa30.94■■■□□ 2.54
SF3A1-202ENST00000411423 RAPGEF3O95398 923 aa30.93■■■□□ 2.54
SF3A1-202ENST00000411423 TROQ12816 1431 aaPredicted RBP30.92■■■□□ 2.54
SF3A1-202ENST00000411423 FANCAO15360 1455 aa30.9■■■□□ 2.54
SF3A1-202ENST00000411423 FYCO1Q9BQS8 1478 aa30.89■■■□□ 2.54
SF3A1-202ENST00000411423 AKNAQ7Z591 1439 aa30.89■■■□□ 2.53
SF3A1-202ENST00000411423 ADGRL1O94910 1474 aa30.88■■■□□ 2.53
SF3A1-202ENST00000411423 LOC105371045A0A1W2PR82 267 aa30.87■■■□□ 2.53
SF3A1-202ENST00000411423 CDK11AQ9UQ88 783 aaPredicted RBP30.87■■■□□ 2.53
SF3A1-202ENST00000411423 PLCH2O75038 1416 aa30.87■■■□□ 2.53
SF3A1-202ENST00000411423 CEP162Q5TB80 1403 aa30.87■■■□□ 2.53
SF3A1-202ENST00000411423 CCDC18Q5T9S5 1454 aa30.87■■■□□ 2.53
SF3A1-202ENST00000411423 CFAP74Q9C0B2 1584 aa30.83■■■□□ 2.53
SF3A1-202ENST00000411423 RICTORQ6R327 1708 aa30.81■■■□□ 2.52
SF3A1-202ENST00000411423 MYO5CQ9NQX4 1742 aa30.8■■■□□ 2.52
SF3A1-202ENST00000411423 DENND4BO75064 1496 aaPredicted RBP30.8■■■□□ 2.52
SF3A1-202ENST00000411423 SCAPERQ9BY12 1400 aa30.71■■■□□ 2.51
SF3A1-202ENST00000411423 CDC42BPBQ9Y5S2 1711 aa30.7■■■□□ 2.5
SF3A1-202ENST00000411423 ARHGAP5Q13017 1502 aa30.68■■■□□ 2.5
Retrieved 100 of 20,778 RNA–protein pairs in 84.2 ms