RNA–Protein interactions for RNA: ENST00000410038.5

LIMS2-209, Transcript of LIM zinc finger domain containing 2, humanhuman

TSL 2 BASIC

Gene LIMS2, Length 1,695 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS2-209ENST00000410038 KIF21BO75037 1637 aa23.69■■□□□ 1.38
LIMS2-209ENST00000410038 NUP160Q12769 1436 aa23.69■■□□□ 1.38
LIMS2-209ENST00000410038 CLASP1Q7Z460 1538 aa23.64■■□□□ 1.37
LIMS2-209ENST00000410038 CYB5RLQ6IPT4 315 aa23.58■■□□□ 1.37
LIMS2-209ENST00000410038 CTTNBP2Q8WZ74 1663 aa23.58■■□□□ 1.36
LIMS2-209ENST00000410038 GOLGA3Q08378 1498 aa23.56■■□□□ 1.36
LIMS2-209ENST00000410038 KIAA0586Q9BVV6 1533 aa23.56■■□□□ 1.36
LIMS2-209ENST00000410038 EHMT2Q96KQ7 1210 aa23.55■■□□□ 1.36
LIMS2-209ENST00000410038 ARAP1Q96P48 1450 aa23.55■■□□□ 1.36
LIMS2-209ENST00000410038 IQGAP2Q13576 1575 aa23.51■■□□□ 1.35
LIMS2-209ENST00000410038 SHROOM2Q13796 1616 aa23.49■■□□□ 1.35
LIMS2-209ENST00000410038 UBTFP17480 764 aaKnown RBP23.45■■□□□ 1.34
LIMS2-209ENST00000410038 JPH4Q96JJ6 628 aa23.44■■□□□ 1.34
LIMS2-209ENST00000410038 LOC105371045A0A1W2PR82 267 aa23.38■■□□□ 1.33
LIMS2-209ENST00000410038 UGGT2Q9NYU1 1516 aa23.38■■□□□ 1.33
LIMS2-209ENST00000410038 PRG4Q92954 1404 aaPredicted RBP23.37■■□□□ 1.33
LIMS2-209ENST00000410038 ERCC6L2Q5T890 1561 aa23.37■■□□□ 1.33
LIMS2-209ENST00000410038 TRHP20396 242 aaPredicted RBP23.36■■□□□ 1.33
LIMS2-209ENST00000410038 TNIKQ9UKE5 1360 aa23.33■■□□□ 1.33
LIMS2-209ENST00000410038 DISP1Q96F81 1524 aa23.31■■□□□ 1.32
LIMS2-209ENST00000410038 CARMIL2Q6F5E8 1435 aa23.29■■□□□ 1.32
LIMS2-209ENST00000410038 KIAA0556O60303 1618 aa23.28■■□□□ 1.32
LIMS2-209ENST00000410038 RANGAP1P46060 587 aaPredicted RBP23.28■■□□□ 1.32
LIMS2-209ENST00000410038 SAMD9Q5K651 1589 aa23.27■■□□□ 1.32
LIMS2-209ENST00000410038 EFCAB5A4FU69 1503 aa23.22■■□□□ 1.31
LIMS2-209ENST00000410038 P3H3Q8IVL6 736 aa23.18■■□□□ 1.3
LIMS2-209ENST00000410038 ARHGAP35Q9NRY4 1499 aa23.17■■□□□ 1.3
LIMS2-209ENST00000410038 CLIP1P30622 1438 aa23.15■■□□□ 1.3
LIMS2-209ENST00000410038 CEP162Q5TB80 1403 aa23.15■■□□□ 1.3
LIMS2-209ENST00000410038 PTPRGP23470 1445 aa23.14■■□□□ 1.29
LIMS2-209ENST00000410038 TTBK1Q5TCY1 1321 aaPredicted RBP23.13■■□□□ 1.29
LIMS2-209ENST00000410038 FHOD3Q2V2M9 1422 aa23.13■■□□□ 1.29
LIMS2-209ENST00000410038 PLB1Q6P1J6 1458 aa23.01■■□□□ 1.27
LIMS2-209ENST00000410038 UACAQ9BZF9 1416 aa23■■□□□ 1.27
LIMS2-209ENST00000410038 ABCA8O94911 1581 aa23■■□□□ 1.27
LIMS2-209ENST00000410038 ADCY10Q96PN6 1610 aa22.99■■□□□ 1.27
LIMS2-209ENST00000410038 FMN1Q68DA7 1419 aa22.98■■□□□ 1.27
LIMS2-209ENST00000410038 RAPGEF6Q8TEU7 1601 aa22.96■■□□□ 1.27
LIMS2-209ENST00000410038 ABCC2Q92887 1545 aa22.96■■□□□ 1.27
LIMS2-209ENST00000410038 UHRF1BP1LA0JNW5 1464 aa22.96■■□□□ 1.27
LIMS2-209ENST00000410038 PCF11O94913 1555 aaKnown RBP22.89■■□□□ 1.25
LIMS2-209ENST00000410038 NUP153P49790 1475 aaKnown RBP22.87■■□□□ 1.25
LIMS2-209ENST00000410038 KDM5BQ9UGL1 1544 aa22.86■■□□□ 1.25
LIMS2-209ENST00000410038 CASKIN1Q8WXD9 1431 aa22.86■■□□□ 1.25
LIMS2-209ENST00000410038 HECW1Q76N89 1606 aa22.85■■□□□ 1.25
LIMS2-209ENST00000410038 ZCCHC11Q5TAX3 1644 aaKnown RBP22.84■■□□□ 1.25
LIMS2-209ENST00000410038 VPS8Q8N3P4 1428 aa22.84■■□□□ 1.25
LIMS2-209ENST00000410038 LRRIQ1Q96JM4 1722 aa22.83■■□□□ 1.25
LIMS2-209ENST00000410038 FYCO1Q9BQS8 1478 aa22.83■■□□□ 1.24
LIMS2-209ENST00000410038 NPM1P06748 294 aaKnown RBP eCLIP22.82■■□□□ 1.24
LIMS2-209ENST00000410038 ATP1B4Q9UN42 357 aaPredicted RBP22.81■■□□□ 1.24
LIMS2-209ENST00000410038 ARID3CA6NKF2 412 aa22.81■■□□□ 1.24
LIMS2-209ENST00000410038 ATP10BO94823 1461 aa22.8■■□□□ 1.24
LIMS2-209ENST00000410038 KIF13AQ9H1H9 1805 aa22.79■■□□□ 1.24
LIMS2-209ENST00000410038 EPRSP07814 1512 aaKnown RBP22.77■■□□□ 1.24
LIMS2-209ENST00000410038 CDK13Q14004 1512 aaKnown RBP22.76■■□□□ 1.23
LIMS2-209ENST00000410038 AEBP2Q6ZN18 517 aaPredicted RBP22.76■■□□□ 1.23
LIMS2-209ENST00000410038 MAPKBP1O60336 1514 aa22.75■■□□□ 1.23
LIMS2-209ENST00000410038 CCDC18Q5T9S5 1454 aa22.72■■□□□ 1.23
LIMS2-209ENST00000410038 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.71■■□□□ 1.23
LIMS2-209ENST00000410038 HNRNPUL2Q1KMD3 747 aaKnown RBP22.71■■□□□ 1.23
LIMS2-209ENST00000410038 ASXL2Q76L83 1435 aa22.71■■□□□ 1.23
LIMS2-209ENST00000410038 ABCC10Q5T3U5 1492 aa22.7■■□□□ 1.22
LIMS2-209ENST00000410038 WDR7Q9Y4E6 1490 aa22.65■■□□□ 1.22
LIMS2-209ENST00000410038 CFAP43Q8NDM7 1665 aa22.64■■□□□ 1.22
LIMS2-209ENST00000410038 DIP2BQ9P265 1576 aa22.63■■□□□ 1.21
LIMS2-209ENST00000410038 FAM69CQ0P6D2 419 aa22.63■■□□□ 1.21
LIMS2-209ENST00000410038 TIAM1Q13009 1591 aa22.62■■□□□ 1.21
LIMS2-209ENST00000410038 PLEKHD1A6NEE1 506 aa22.62■■□□□ 1.21
LIMS2-209ENST00000410038 CDK11AQ9UQ88 783 aaPredicted RBP22.61■■□□□ 1.21
LIMS2-209ENST00000410038 MAGI3Q5TCQ9 1506 aa22.6■■□□□ 1.21
LIMS2-209ENST00000410038 MAP3K1Q13233 1512 aa22.59■■□□□ 1.21
LIMS2-209ENST00000410038 TROQ12816 1431 aaPredicted RBP22.56■■□□□ 1.2
LIMS2-209ENST00000410038 KCNH8Q96L42 1107 aa22.56■■□□□ 1.2
LIMS2-209ENST00000410038 APLP2Q06481 763 aa22.55■■□□□ 1.2
LIMS2-209ENST00000410038 GLI2P10070 1586 aa22.53■■□□□ 1.2
LIMS2-209ENST00000410038 KIF14Q15058 1648 aa22.52■■□□□ 1.2
LIMS2-209ENST00000410038 MTUS2Q5JR59 1369 aa22.52■■□□□ 1.2
LIMS2-209ENST00000410038 EHBP1L1Q8N3D4 1523 aa22.51■■□□□ 1.19
LIMS2-209ENST00000410038 LRRC9Q6ZRR7 1453 aa22.5■■□□□ 1.19
LIMS2-209ENST00000410038 ABCA9Q8IUA7 1624 aa22.49■■□□□ 1.19
LIMS2-209ENST00000410038 KANK4Q5T7N3 995 aaPredicted RBP22.49■■□□□ 1.19
LIMS2-209ENST00000410038 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.47■■□□□ 1.19
LIMS2-209ENST00000410038 KDM6BO15054 1643 aa22.47■■□□□ 1.19
LIMS2-209ENST00000410038 MAP3K4Q9Y6R4 1608 aa22.46■■□□□ 1.19
LIMS2-209ENST00000410038 TTC37Q6PGP7 1564 aa22.45■■□□□ 1.19
LIMS2-209ENST00000410038 TSPOAP1O95153 1857 aa22.43■■□□□ 1.18
LIMS2-209ENST00000410038 SUPT6HQ7KZ85 1726 aaKnown RBP22.43■■□□□ 1.18
LIMS2-209ENST00000410038 CD109Q6YHK3 1445 aa22.4■■□□□ 1.18
LIMS2-209ENST00000410038 MYO5CQ9NQX4 1742 aa22.39■■□□□ 1.17
LIMS2-209ENST00000410038 PPRC1Q5VV67 1664 aaKnown RBP22.38■■□□□ 1.17
LIMS2-209ENST00000410038 NCOA2Q15596 1464 aa22.38■■□□□ 1.17
LIMS2-209ENST00000410038 CDC42BPAQ5VT25 1732 aa22.37■■□□□ 1.17
LIMS2-209ENST00000410038 CDC42BPBQ9Y5S2 1711 aa22.34■■□□□ 1.17
LIMS2-209ENST00000410038 PPARGC1BQ86YN6 1023 aaKnown RBP22.33■■□□□ 1.17
LIMS2-209ENST00000410038 PREX2Q70Z35 1606 aa22.33■■□□□ 1.17
LIMS2-209ENST00000410038 PLCH2O75038 1416 aa22.32■■□□□ 1.16
LIMS2-209ENST00000410038 GPATCH8Q9UKJ3 1502 aaKnown RBP22.31■■□□□ 1.16
LIMS2-209ENST00000410038 CCNB3Q8WWL7 1395 aa22.31■■□□□ 1.16
LIMS2-209ENST00000410038 ITSN2Q9NZM3 1697 aa22.3■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms