RNA–Protein interactions for RNA: ENST00000409064.5

KDM3A-202, Transcript of lysine demethylase 3A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene KDM3A, Length 4,621 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KDM3A-202ENST00000409064 SMARCA2P51531 1590 aa13.95□□□□□ -0.18
KDM3A-202ENST00000409064 CARMIL1Q5VZK9 1371 aa13.95□□□□□ -0.18
KDM3A-202ENST00000409064 BCL11AQ9H165 835 aa13.95□□□□□ -0.18
KDM3A-202ENST00000409064 TONSLQ96HA7 1378 aa13.94□□□□□ -0.18
KDM3A-202ENST00000409064 CADPSQ9ULU8 1353 aa13.94□□□□□ -0.18
KDM3A-202ENST00000409064 SOGA1O94964 1423 aa13.94□□□□□ -0.18
KDM3A-202ENST00000409064 ANP32CO43423 234 aa13.93□□□□□ -0.18
KDM3A-202ENST00000409064 WIZO95785 1651 aa13.93□□□□□ -0.18
KDM3A-202ENST00000409064 CLSPNQ9HAW4 1339 aa13.93□□□□□ -0.18
KDM3A-202ENST00000409064 RGL3Q3MIN7 710 aa13.92□□□□□ -0.18
KDM3A-202ENST00000409064 EIF4G1Q04637 1599 aaKnown RBP13.92□□□□□ -0.18
KDM3A-202ENST00000409064 GOLGA3Q08378 1498 aa13.92□□□□□ -0.18
KDM3A-202ENST00000409064 HAP1P54257 671 aaPredicted RBP13.92□□□□□ -0.18
KDM3A-202ENST00000409064 ZBTB7CA1YPR0 619 aa13.91□□□□□ -0.18
KDM3A-202ENST00000409064 OSCARQ8IYS5 282 aa13.91□□□□□ -0.18
KDM3A-202ENST00000409064 MIER1Q8N108 512 aa13.87□□□□□ -0.19
KDM3A-202ENST00000409064 DAXXQ9UER7 740 aaPredicted RBP13.87□□□□□ -0.19
KDM3A-202ENST00000409064 ZBTB47Q9UFB7 747 aaPredicted RBP13.86□□□□□ -0.19
KDM3A-202ENST00000409064 CARMIL2Q6F5E8 1435 aa13.85□□□□□ -0.19
KDM3A-202ENST00000409064 GGT6Q6P531 493 aa13.85□□□□□ -0.19
KDM3A-202ENST00000409064 ABCC8Q09428 1581 aa13.85□□□□□ -0.19
KDM3A-202ENST00000409064 CCDC88BA6NC98 1476 aa13.85□□□□□ -0.19
KDM3A-202ENST00000409064 LMOD2Q6P5Q4 547 aa13.84□□□□□ -0.19
KDM3A-202ENST00000409064 CANXP27824 592 aaKnown RBP13.82□□□□□ -0.2
KDM3A-202ENST00000409064 ATAD2BQ9ULI0 1458 aa13.82□□□□□ -0.2
KDM3A-202ENST00000409064 JPH4Q96JJ6 628 aa13.81□□□□□ -0.2
KDM3A-202ENST00000409064 CEP164Q9UPV0 1460 aa13.81□□□□□ -0.2
KDM3A-202ENST00000409064 CCNB3Q8WWL7 1395 aa13.79□□□□□ -0.2
KDM3A-202ENST00000409064 TOP2AP11388 1531 aaKnown RBP13.79□□□□□ -0.2
KDM3A-202ENST00000409064 TMC1Q8TDI8 760 aa13.78□□□□□ -0.2
KDM3A-202ENST00000409064 NPM2Q86SE8 214 aaKnown RBP13.76□□□□□ -0.21
KDM3A-202ENST00000409064 EFCAB2Q5VUJ9 269 aa13.75□□□□□ -0.21
KDM3A-202ENST00000409064 AEBP2Q6ZN18 517 aaPredicted RBP13.74□□□□□ -0.21
KDM3A-202ENST00000409064 POGKQ9P215 609 aa13.73□□□□□ -0.21
KDM3A-202ENST00000409064 FANCD2Q9BXW9 1451 aa13.71□□□□□ -0.22
KDM3A-202ENST00000409064 HDGFP51858 240 aaKnown RBP13.7□□□□□ -0.22
KDM3A-202ENST00000409064 SALL2Q9Y467 1007 aaPredicted RBP13.69□□□□□ -0.22
KDM3A-202ENST00000409064 DNAJC5BQ9UF47 199 aa13.68□□□□□ -0.22
KDM3A-202ENST00000409064 FHAD1B1AJZ9 1412 aa13.68□□□□□ -0.22
KDM3A-202ENST00000409064 VPS8Q8N3P4 1428 aa13.67□□□□□ -0.22
KDM3A-202ENST00000409064 DDX10Q13206 875 aaKnown RBP13.67□□□□□ -0.22
KDM3A-202ENST00000409064 HIRIP3Q9BW71 556 aaPredicted RBP13.66□□□□□ -0.22
KDM3A-202ENST00000409064 KANK1Q14678 1352 aa13.66□□□□□ -0.22
KDM3A-202ENST00000409064 SMARCA4P51532 1647 aa13.66□□□□□ -0.22
KDM3A-202ENST00000409064 PPM1GO15355 546 aaPredicted RBP13.65□□□□□ -0.22
KDM3A-202ENST00000409064 KIF3BO15066 747 aa13.62□□□□□ -0.23
KDM3A-202ENST00000409064 FAM69CQ0P6D2 419 aa13.62□□□□□ -0.23
KDM3A-202ENST00000409064 RUSC2Q8N2Y8 1516 aa13.62□□□□□ -0.23
KDM3A-202ENST00000409064 ARXQ96QS3 562 aa13.61□□□□□ -0.23
KDM3A-202ENST00000409064 SAFB2Q14151 953 aaKnown RBP eCLIP13.6□□□□□ -0.23
KDM3A-202ENST00000409064 FAM9BQ8IZU0 186 aa13.6□□□□□ -0.23
KDM3A-202ENST00000409064 PTPRGP23470 1445 aa13.6□□□□□ -0.23
KDM3A-202ENST00000409064 EIF4G2P78344 907 aaKnown RBP eCLIP13.59□□□□□ -0.23
KDM3A-202ENST00000409064 WDR43Q15061 677 aaKnown RBP eCLIP13.59□□□□□ -0.23
KDM3A-202ENST00000409064 CARD11Q9BXL7 1154 aa13.57□□□□□ -0.24
KDM3A-202ENST00000409064 HNRNPMP52272 730 aaKnown RBP eCLIP13.57□□□□□ -0.243e-8■■■■□ 20.7
KDM3A-202ENST00000409064 SOX12O15370 315 aa13.57□□□□□ -0.24
KDM3A-202ENST00000409064 STK26Q9P289 416 aa13.57□□□□□ -0.24
KDM3A-202ENST00000409064 SPAG9O60271 1321 aaKnown RBP13.56□□□□□ -0.24
KDM3A-202ENST00000409064 WASHC2CQ9Y4E1 1318 aa13.54□□□□□ -0.24
KDM3A-202ENST00000409064 CDCA8Q53HL2 280 aa13.54□□□□□ -0.24
KDM3A-202ENST00000409064 DCAF11Q8TEB1 546 aa13.54□□□□□ -0.24
KDM3A-202ENST00000409064 NCAPD3P42695 1498 aa13.53□□□□□ -0.24
KDM3A-202ENST00000409064 FKBP8Q14318 412 aa13.53□□□□□ -0.24
KDM3A-202ENST00000409064 FMN1Q68DA7 1419 aa13.52□□□□□ -0.24
KDM3A-202ENST00000409064 SUPT16HQ9Y5B9 1047 aaKnown RBP13.52□□□□□ -0.25
KDM3A-202ENST00000409064 EID1Q9Y6B2 187 aa13.52□□□□□ -0.25
KDM3A-202ENST00000409064 SRPK2P78362 688 aaKnown RBP13.51□□□□□ -0.25
KDM3A-202ENST00000409064 AQRO60306 1485 aaKnown RBP eCLIP13.5□□□□□ -0.253e-7■■■■□ 20.6
KDM3A-202ENST00000409064 KNSTRNQ9Y448 316 aa13.5□□□□□ -0.25
KDM3A-202ENST00000409064 RAPGEF2Q9Y4G8 1499 aa13.5□□□□□ -0.25
KDM3A-202ENST00000409064 FHOD3Q2V2M9 1422 aa13.49□□□□□ -0.25
KDM3A-202ENST00000409064 HNRNPUQ00839 825 aaKnown RBP eCLIP13.49□□□□□ -0.25
KDM3A-202ENST00000409064 TNNT2P45379 298 aaPredicted RBP13.49□□□□□ -0.25
KDM3A-202ENST00000409064 PKD2Q13563 968 aa13.49□□□□□ -0.25
KDM3A-202ENST00000409064 MRS2Q9HD23 443 aa13.49□□□□□ -0.25
KDM3A-202ENST00000409064 KANK4Q5T7N3 995 aaPredicted RBP13.48□□□□□ -0.25
KDM3A-202ENST00000409064 RAD54L2Q9Y4B4 1467 aa13.48□□□□□ -0.25
KDM3A-202ENST00000409064 SIN3AQ96ST3 1273 aa13.48□□□□□ -0.25
KDM3A-202ENST00000409064 PAK3O75914 559 aaPredicted RBP13.47□□□□□ -0.25
KDM3A-202ENST00000409064 CFAP53Q96M91 514 aa13.47□□□□□ -0.25
KDM3A-202ENST00000409064 NUTM2DQ5VT03 806 aaPredicted RBP13.47□□□□□ -0.25
KDM3A-202ENST00000409064 GAPVD1Q14C86 1478 aa13.47□□□□□ -0.25
KDM3A-202ENST00000409064 NESP48681 1621 aa13.46□□□□□ -0.26
KDM3A-202ENST00000409064 NPHP1O15259 732 aa13.45□□□□□ -0.26
KDM3A-202ENST00000409064 CCDC9Q9Y3X0 531 aaKnown RBP13.44□□□□□ -0.26
KDM3A-202ENST00000409064 NUP155O75694 1391 aa13.44□□□□□ -0.26
KDM3A-202ENST00000409064 FOXD1Q16676 465 aa13.44□□□□□ -0.26
KDM3A-202ENST00000409064 KIF21BO75037 1637 aa13.44□□□□□ -0.26
KDM3A-202ENST00000409064 DHX57Q6P158 1386 aaKnown RBP13.43□□□□□ -0.26
KDM3A-202ENST00000409064 RSPH4AQ5TD94 716 aa13.43□□□□□ -0.26
KDM3A-202ENST00000409064 FGD5Q6ZNL6 1462 aa13.43□□□□□ -0.26
KDM3A-202ENST00000409064 CC2D2AQ9P2K1 1620 aa13.41□□□□□ -0.26
KDM3A-202ENST00000409064 ANKRD30AQ9BXX3 1397 aa13.41□□□□□ -0.26
KDM3A-202ENST00000409064 NUTM2FA1L443 756 aa13.41□□□□□ -0.26
KDM3A-202ENST00000409064 ARHGAP35Q9NRY4 1499 aa13.4□□□□□ -0.26
KDM3A-202ENST00000409064 NEUROD2Q15784 382 aa13.4□□□□□ -0.26
KDM3A-202ENST00000409064 SENP3-EIF4A1A0A087X0R7 540 aa13.4□□□□□ -0.27
KDM3A-202ENST00000409064 CSB-PGBD3P0DP91 1061 aa13.38□□□□□ -0.27
KDM3A-202ENST00000409064 ANP32EQ9BTT0 268 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms