RNA–Protein interactions for RNA: ENST00000403495.2

HMGB1P17-201, Transcript of high mobility group box 1 pseudogene 17, humanhuman

BASIC

Gene HMGB1P17, Length 628 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P17-201ENST00000403495 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.31□□□□□ -0.92
HMGB1P17-201ENST00000403495 GSE1Q14687 1217 aa9.3□□□□□ -0.92
HMGB1P17-201ENST00000403495 CHADLQ6NUI6 762 aa9.29□□□□□ -0.92
HMGB1P17-201ENST00000403495 TRIM41Q8WV44 630 aa9.26□□□□□ -0.93
HMGB1P17-201ENST00000403495 FAM212AQ96EL1 285 aa9.26□□□□□ -0.93
HMGB1P17-201ENST00000403495 PYGBP11216 843 aa9.22□□□□□ -0.93
HMGB1P17-201ENST00000403495 SPRYD3Q8NCJ5 442 aa9.22□□□□□ -0.93
HMGB1P17-201ENST00000403495 TSHZ2Q9NRE2 1034 aa9.22□□□□□ -0.93
HMGB1P17-201ENST00000403495 KDM2AQ9Y2K7 1162 aa9.22□□□□□ -0.93
HMGB1P17-201ENST00000403495 RIOK3O14730 519 aaKnown RBP9.21□□□□□ -0.94
HMGB1P17-201ENST00000403495 HS6ST3Q8IZP7 471 aa9.21□□□□□ -0.94
HMGB1P17-201ENST00000403495 VSIG10Q8N0Z9 540 aa9.19□□□□□ -0.94
HMGB1P17-201ENST00000403495 TSPYL2Q9H2G4 693 aaPredicted RBP9.18□□□□□ -0.94
HMGB1P17-201ENST00000403495 NKX1-1Q15270 411 aaPredicted RBP9.16□□□□□ -0.94
HMGB1P17-201ENST00000403495 STK25O00506 426 aa9.15□□□□□ -0.94
HMGB1P17-201ENST00000403495 FARP1Q9Y4F1 1045 aaPredicted RBP9.15□□□□□ -0.94
HMGB1P17-201ENST00000403495 PRKAR2AP13861 404 aaKnown RBP9.14□□□□□ -0.95
HMGB1P17-201ENST00000403495 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.12□□□□□ -0.95
HMGB1P17-201ENST00000403495 VGFO15240 615 aaPredicted RBP9.12□□□□□ -0.95
HMGB1P17-201ENST00000403495 CHRM1P11229 460 aaPredicted RBP9.12□□□□□ -0.95
HMGB1P17-201ENST00000403495 ZFP91Q96JP5 570 aaPredicted RBP9.12□□□□□ -0.95
HMGB1P17-201ENST00000403495 SP7Q8TDD2 431 aaPredicted RBP9.1□□□□□ -0.95
HMGB1P17-201ENST00000403495 BCL11BQ9C0K0 894 aaPredicted RBP9.1□□□□□ -0.95
HMGB1P17-201ENST00000403495 STK24Q9Y6E0 443 aa9.1□□□□□ -0.95
HMGB1P17-201ENST00000403495 FXR2P51116 673 aaKnown RBP eCLIP9.08□□□□□ -0.96
HMGB1P17-201ENST00000403495 GTPBP6O43824 516 aaPredicted RBP9.07□□□□□ -0.96
HMGB1P17-201ENST00000403495 TAOK2Q9UL54 1235 aa9.07□□□□□ -0.96
HMGB1P17-201ENST00000403495 DNAJC5Q9H3Z4 198 aa9.06□□□□□ -0.96
HMGB1P17-201ENST00000403495 BCANQ96GW7 911 aa9.05□□□□□ -0.96
HMGB1P17-201ENST00000403495 PCDHB8Q9UN66 801 aa9.05□□□□□ -0.96
HMGB1P17-201ENST00000403495 PCDHB13Q9Y5F0 798 aa9.05□□□□□ -0.96
HMGB1P17-201ENST00000403495 CHRDL2Q6WN34 429 aa9.04□□□□□ -0.96
HMGB1P17-201ENST00000403495 PIP4P2Q8N4L2 257 aa9.04□□□□□ -0.96
HMGB1P17-201ENST00000403495 CCDC61Q9Y6R9 512 aa9.03□□□□□ -0.96
HMGB1P17-201ENST00000403495 PRKCSHP14314 528 aaPredicted RBP9.01□□□□□ -0.97
HMGB1P17-201ENST00000403495 SGIP1Q9BQI5 828 aa9.01□□□□□ -0.97
HMGB1P17-201ENST00000403495 ZNF467Q7Z7K2 595 aaPredicted RBP8.98□□□□□ -0.97
HMGB1P17-201ENST00000403495 MAP3K13O43283 966 aa8.95□□□□□ -0.98
HMGB1P17-201ENST00000403495 PDAP1Q13442 181 aaKnown RBP8.95□□□□□ -0.98
HMGB1P17-201ENST00000403495 IFNL1Q8IU54 200 aa8.95□□□□□ -0.98
HMGB1P17-201ENST00000403495 PSEN1P49768 467 aa8.94□□□□□ -0.98
HMGB1P17-201ENST00000403495 PAK3O75914 559 aaPredicted RBP8.93□□□□□ -0.98
HMGB1P17-201ENST00000403495 ZNF579Q8NAF0 562 aaKnown RBP8.92□□□□□ -0.98
HMGB1P17-201ENST00000403495 PHF12Q96QT6 1004 aa8.92□□□□□ -0.98
HMGB1P17-201ENST00000403495 ZRANB1Q9UGI0 708 aa8.92□□□□□ -0.98
HMGB1P17-201ENST00000403495 KIF12Q96FN5 646 aa8.91□□□□□ -0.98
HMGB1P17-201ENST00000403495 CD44P16070 742 aaKnown RBP8.9□□□□□ -0.98
HMGB1P17-201ENST00000403495 TPRNQ4KMQ1 711 aa8.88□□□□□ -0.99
HMGB1P17-201ENST00000403495 CADPS2Q86UW7 1296 aa8.88□□□□□ -0.99
HMGB1P17-201ENST00000403495 MFRPQ9BY79 579 aa8.88□□□□□ -0.99
HMGB1P17-201ENST00000403495 CABP2Q9NPB3 220 aa8.87□□□□□ -0.99
HMGB1P17-201ENST00000403495 EFCAB3Q8N7B9 438 aa8.86□□□□□ -0.99
HMGB1P17-201ENST00000403495 RYDENQ9NUL5 291 aaKnown RBP8.85□□□□□ -0.99
HMGB1P17-201ENST00000403495 PPP1R37O75864 691 aa8.83□□□□□ -1
HMGB1P17-201ENST00000403495 NBR1Q14596 966 aa8.83□□□□□ -1
HMGB1P17-201ENST00000403495 TRPC6Q9Y210 931 aa8.83□□□□□ -1
HMGB1P17-201ENST00000403495 PHF8Q9UPP1 1060 aa8.82□□□□□ -1
HMGB1P17-201ENST00000403495 FBXO22Q8NEZ5 403 aa8.79□□□□□ -1
HMGB1P17-201ENST00000403495 MS4A3Q96HJ5 214 aa8.79□□□□□ -1
HMGB1P17-201ENST00000403495 C19orf67A6NJJ6 358 aa8.76□□□□□ -1.01
HMGB1P17-201ENST00000403495 TMEM106CQ9BVX2 250 aa8.76□□□□□ -1.01
HMGB1P17-201ENST00000403495 NLRP6P59044 892 aa8.75□□□□□ -1.01
HMGB1P17-201ENST00000403495 SOX12O15370 315 aa8.73□□□□□ -1.01
HMGB1P17-201ENST00000403495 MS4A4AQ96JQ5 239 aa8.73□□□□□ -1.01
HMGB1P17-201ENST00000403495 KCNV2Q8TDN2 545 aa8.72□□□□□ -1.01
HMGB1P17-201ENST00000403495 WDR70Q9NW82 654 aa8.72□□□□□ -1.01
HMGB1P17-201ENST00000403495 GOLGA2Q08379 1002 aa8.7□□□□□ -1.02
HMGB1P17-201ENST00000403495 EVX2Q03828 476 aa8.69□□□□□ -1.02
HMGB1P17-201ENST00000403495 GALR2O43603 387 aaPredicted RBP8.68□□□□□ -1.02
HMGB1P17-201ENST00000403495 PLSCR2Q9NRY7 297 aa8.68□□□□□ -1.02
HMGB1P17-201ENST00000403495 TTLL13PA6NNM8 815 aa8.66□□□□□ -1.02
HMGB1P17-201ENST00000403495 HAX1O00165 279 aa8.66□□□□□ -1.02
HMGB1P17-201ENST00000403495 BMP2KQ9NSY1 1161 aaPredicted RBP8.66□□□□□ -1.02
HMGB1P17-201ENST00000403495 NCKAP5LQ9HCH0 1330 aa8.65□□□□□ -1.02
HMGB1P17-201ENST00000403495 MKRN3Q13064 507 aaKnown RBP8.65□□□□□ -1.02
HMGB1P17-201ENST00000403495 P3H3Q8IVL6 736 aa8.65□□□□□ -1.02
HMGB1P17-201ENST00000403495 TIE1P35590 1138 aa8.61□□□□□ -1.03
HMGB1P17-201ENST00000403495 DPY19L2Q6NUT2 758 aa8.61□□□□□ -1.03
HMGB1P17-201ENST00000403495 LARP6Q9BRS8 491 aaKnown RBP8.61□□□□□ -1.03
HMGB1P17-201ENST00000403495 TRIM35Q9UPQ4 493 aa8.61□□□□□ -1.03
HMGB1P17-201ENST00000403495 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.6□□□□□ -1.03
HMGB1P17-201ENST00000403495 E2F4Q16254 413 aa8.59□□□□□ -1.03
HMGB1P17-201ENST00000403495 ATN1P54259 1190 aaPredicted RBP8.56□□□□□ -1.04
HMGB1P17-201ENST00000403495 CRISPLD2Q9H0B8 497 aa8.56□□□□□ -1.04
HMGB1P17-201ENST00000403495 SEMA3EO15041 775 aa8.55□□□□□ -1.04
HMGB1P17-201ENST00000403495 PDE4AP27815 886 aa8.55□□□□□ -1.04
HMGB1P17-201ENST00000403495 LMOD2Q6P5Q4 547 aa8.54□□□□□ -1.04
HMGB1P17-201ENST00000403495 MFSD10Q14728 455 aa8.53□□□□□ -1.04
HMGB1P17-201ENST00000403495 LHX8Q68G74 356 aa8.53□□□□□ -1.04
HMGB1P17-201ENST00000403495 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.53□□□□□ -1.04
HMGB1P17-201ENST00000403495 ILDR1Q86SU0 546 aaPredicted RBP8.53□□□□□ -1.04
HMGB1P17-201ENST00000403495 ARHGEF1Q92888 912 aaKnown RBP8.53□□□□□ -1.04
HMGB1P17-201ENST00000403495 DDX27Q96GQ7 796 aaKnown RBP8.53□□□□□ -1.04
HMGB1P17-201ENST00000403495 ATMINO43313 823 aaPredicted RBP8.51□□□□□ -1.05
HMGB1P17-201ENST00000403495 PDCD7Q8N8D1 485 aaKnown RBP8.5□□□□□ -1.05
HMGB1P17-201ENST00000403495 MICALL2Q8IY33 904 aa8.49□□□□□ -1.05
HMGB1P17-201ENST00000403495 TESPA1A2RU30 521 aaPredicted RBP8.47□□□□□ -1.05
HMGB1P17-201ENST00000403495 IRX5P78411 483 aaPredicted RBP8.47□□□□□ -1.05
HMGB1P17-201ENST00000403495 PPP1R15BQ5SWA1 713 aa8.47□□□□□ -1.05
HMGB1P17-201ENST00000403495 ASTLQ6HA08 431 aaPredicted RBP8.46□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms