RNA–Protein interactions for RNA: ENST00000397545.8

CCDC40-204, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS P3 TSL 5 BASIC

Gene CCDC40, Length 4,294 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-204ENST00000397545 MIER1Q8N108 512 aa15.03■□□□□ -0
CCDC40-204ENST00000397545 DDX10Q13206 875 aaKnown RBP15.02□□□□□ -0.01
CCDC40-204ENST00000397545 PRXQ9BXM0 1461 aa14.99□□□□□ -0.01
CCDC40-204ENST00000397545 BIVM-ERCC5R4GMW8 1640 aa14.98□□□□□ -0.01
CCDC40-204ENST00000397545 CC2D2AQ9P2K1 1620 aa14.97□□□□□ -0.01
CCDC40-204ENST00000397545 CARMIL1Q5VZK9 1371 aa14.96□□□□□ -0.02
CCDC40-204ENST00000397545 IGF1RP08069 1367 aa14.94□□□□□ -0.02
CCDC40-204ENST00000397545 FGD5Q6ZNL6 1462 aa14.94□□□□□ -0.02
CCDC40-204ENST00000397545 ARAP1Q96P48 1450 aa14.93□□□□□ -0.02
CCDC40-204ENST00000397545 HIRIP3Q9BW71 556 aaPredicted RBP14.92□□□□□ -0.02
CCDC40-204ENST00000397545 NESP48681 1621 aa14.92□□□□□ -0.02
CCDC40-204ENST00000397545 FANCD2Q9BXW9 1451 aa14.92□□□□□ -0.02
CCDC40-204ENST00000397545 DNAJC5BQ9UF47 199 aa14.92□□□□□ -0.02
CCDC40-204ENST00000397545 ERICH3Q5RHP9 1530 aa14.91□□□□□ -0.02
CCDC40-204ENST00000397545 HNRNPUQ00839 825 aaKnown RBP eCLIP14.89□□□□□ -0.03
CCDC40-204ENST00000397545 RAD54L2Q9Y4B4 1467 aa14.89□□□□□ -0.03
CCDC40-204ENST00000397545 NPM2Q86SE8 214 aaKnown RBP14.85□□□□□ -0.03
CCDC40-204ENST00000397545 ARHGAP35Q9NRY4 1499 aa14.85□□□□□ -0.03
CCDC40-204ENST00000397545 FAM9BQ8IZU0 186 aa14.84□□□□□ -0.03
CCDC40-204ENST00000397545 IRX6P78412 446 aaPredicted RBP14.82□□□□□ -0.04
CCDC40-204ENST00000397545 TDRD9Q8NDG6 1382 aaKnown RBP14.82□□□□□ -0.04
CCDC40-204ENST00000397545 BCL11AQ9H165 835 aa14.81□□□□□ -0.04
CCDC40-204ENST00000397545 SALL2Q9Y467 1007 aaPredicted RBP14.8□□□□□ -0.04
CCDC40-204ENST00000397545 ZNF777Q9ULD5 760 aaPredicted RBP14.8□□□□□ -0.04
CCDC40-204ENST00000397545 CCNB3Q8WWL7 1395 aa14.79□□□□□ -0.04
CCDC40-204ENST00000397545 TONSLQ96HA7 1378 aa14.78□□□□□ -0.04
CCDC40-204ENST00000397545 FHOD3Q2V2M9 1422 aa14.76□□□□□ -0.05
CCDC40-204ENST00000397545 CHIC2Q9UKJ5 165 aa14.76□□□□□ -0.05
CCDC40-204ENST00000397545 ANP32AP39687 249 aaKnown RBP14.76□□□□□ -0.05
CCDC40-204ENST00000397545 POLA1P09884 1462 aaPredicted RBP14.75□□□□□ -0.05
CCDC40-204ENST00000397545 TOPBP1Q92547 1522 aa14.74□□□□□ -0.05
CCDC40-204ENST00000397545 DHX57Q6P158 1386 aaKnown RBP14.72□□□□□ -0.05
CCDC40-204ENST00000397545 SENP3-EIF4A1A0A087X0R7 540 aa14.71□□□□□ -0.06
CCDC40-204ENST00000397545 NBR1Q14596 966 aa14.69□□□□□ -0.06
CCDC40-204ENST00000397545 CHMP7Q8WUX9 453 aaPredicted RBP14.69□□□□□ -0.06
CCDC40-204ENST00000397545 DNMBPQ6XZF7 1577 aa14.68□□□□□ -0.06
CCDC40-204ENST00000397545 FHAD1B1AJZ9 1412 aa14.68□□□□□ -0.06
CCDC40-204ENST00000397545 CANXP27824 592 aaKnown RBP14.67□□□□□ -0.06
CCDC40-204ENST00000397545 PDS5BQ9NTI5 1447 aa14.67□□□□□ -0.06
CCDC40-204ENST00000397545 PRDM2Q13029 1718 aa14.67□□□□□ -0.06
CCDC40-204ENST00000397545 RRBP1Q9P2E9 1410 aaKnown RBP14.66□□□□□ -0.06
CCDC40-204ENST00000397545 PHLDB1Q86UU1 1377 aa14.66□□□□□ -0.06
CCDC40-204ENST00000397545 PLPPR3Q6T4P5 718 aa14.65□□□□□ -0.06
CCDC40-204ENST00000397545 MRS2Q9HD23 443 aa14.65□□□□□ -0.06
CCDC40-204ENST00000397545 RAB3GAP2Q9H2M9 1393 aa14.65□□□□□ -0.06
CCDC40-204ENST00000397545 ERCC6Q03468 1493 aa14.65□□□□□ -0.06
CCDC40-204ENST00000397545 URB2Q14146 1524 aaKnown RBP14.64□□□□□ -0.07
CCDC40-204ENST00000397545 MTUS2Q5JR59 1369 aa14.64□□□□□ -0.07
CCDC40-204ENST00000397545 ABCA10Q8WWZ4 1543 aa14.64□□□□□ -0.07
CCDC40-204ENST00000397545 CCDC136Q96JN2 1154 aa14.63□□□□□ -0.07
CCDC40-204ENST00000397545 SIN3AQ96ST3 1273 aa14.63□□□□□ -0.07
CCDC40-204ENST00000397545 LRRC9Q6ZRR7 1453 aa14.62□□□□□ -0.07
CCDC40-204ENST00000397545 GAPVD1Q14C86 1478 aa14.6□□□□□ -0.07
CCDC40-204ENST00000397545 TIAM1Q13009 1591 aa14.6□□□□□ -0.07
CCDC40-204ENST00000397545 EIF5BO60841 1220 aaKnown RBP14.59□□□□□ -0.07
CCDC40-204ENST00000397545 TMC1Q8TDI8 760 aa14.59□□□□□ -0.07
CCDC40-204ENST00000397545 SETD5Q9C0A6 1442 aa14.57□□□□□ -0.08
CCDC40-204ENST00000397545 KDM2AQ9Y2K7 1162 aa14.57□□□□□ -0.08
CCDC40-204ENST00000397545 PCF11O94913 1555 aaKnown RBP14.56□□□□□ -0.08
CCDC40-204ENST00000397545 RRP7BPQ9NSQ0 103 aa14.56□□□□□ -0.08
CCDC40-204ENST00000397545 LAMC3Q9Y6N6 1575 aa14.55□□□□□ -0.08
CCDC40-204ENST00000397545 AQRO60306 1485 aaKnown RBP eCLIP14.55□□□□□ -0.08
CCDC40-204ENST00000397545 SUPT16HQ9Y5B9 1047 aaKnown RBP14.54□□□□□ -0.08
CCDC40-204ENST00000397545 ZBTB47Q9UFB7 747 aaPredicted RBP14.54□□□□□ -0.08
CCDC40-204ENST00000397545 FMN1Q68DA7 1419 aa14.53□□□□□ -0.08
CCDC40-204ENST00000397545 CASKIN1Q8WXD9 1431 aa14.51□□□□□ -0.09
CCDC40-204ENST00000397545 SLC24A1O60721 1099 aa14.49□□□□□ -0.09
CCDC40-204ENST00000397545 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.49□□□□□ -0.09
CCDC40-204ENST00000397545 NPM1P06748 294 aaKnown RBP eCLIP14.49□□□□□ -0.09
CCDC40-204ENST00000397545 EIF4G2P78344 907 aaKnown RBP eCLIP14.49□□□□□ -0.09
CCDC40-204ENST00000397545 ARXQ96QS3 562 aa14.48□□□□□ -0.09
CCDC40-204ENST00000397545 ANP32EQ9BTT0 268 aa14.48□□□□□ -0.09
CCDC40-204ENST00000397545 KCNH8Q96L42 1107 aa14.48□□□□□ -0.09
CCDC40-204ENST00000397545 FYCO1Q9BQS8 1478 aa14.48□□□□□ -0.09
CCDC40-204ENST00000397545 CUL7Q14999 1698 aa14.47□□□□□ -0.09
CCDC40-204ENST00000397545 CHGAP10645 457 aaKnown RBP14.46□□□□□ -0.09
CCDC40-204ENST00000397545 EFCAB5A4FU69 1503 aa14.46□□□□□ -0.1
CCDC40-204ENST00000397545 KIF21AQ7Z4S6 1674 aa14.45□□□□□ -0.1
CCDC40-204ENST00000397545 MAP3K1Q13233 1512 aa14.45□□□□□ -0.1
CCDC40-204ENST00000397545 FGD6Q6ZV73 1430 aa14.43□□□□□ -0.1
CCDC40-204ENST00000397545 NEFMP07197 916 aa14.4□□□□□ -0.1
CCDC40-204ENST00000397545 CTTNBP2Q8WZ74 1663 aa14.39□□□□□ -0.11
CCDC40-204ENST00000397545 NCOA2Q15596 1464 aa14.38□□□□□ -0.11
CCDC40-204ENST00000397545 SENP3Q9H4L4 574 aaPredicted RBP14.38□□□□□ -0.11
CCDC40-204ENST00000397545 MRC2Q9UBG0 1479 aa14.38□□□□□ -0.11
CCDC40-204ENST00000397545 ZNF608Q9ULD9 1512 aaPredicted RBP14.38□□□□□ -0.11
CCDC40-204ENST00000397545 ABCA5Q8WWZ7 1642 aa14.37□□□□□ -0.11
CCDC40-204ENST00000397545 HSP90AA1P07900 732 aaKnown RBP14.37□□□□□ -0.11
CCDC40-204ENST00000397545 MAPKBP1O60336 1514 aa14.37□□□□□ -0.11
CCDC40-204ENST00000397545 CFAP43Q8NDM7 1665 aa14.36□□□□□ -0.11
CCDC40-204ENST00000397545 SNAPC4Q5SXM2 1469 aa14.36□□□□□ -0.11
CCDC40-204ENST00000397545 TSPY4P0CV99 314 aa14.36□□□□□ -0.11
CCDC40-204ENST00000397545 TSPY10P0CW01 314 aa14.36□□□□□ -0.11
CCDC40-204ENST00000397545 RGL3Q3MIN7 710 aa14.36□□□□□ -0.11
CCDC40-204ENST00000397545 B4GALNT3Q6L9W6 998 aa14.36□□□□□ -0.11
CCDC40-204ENST00000397545 MYOM3Q5VTT5 1437 aa14.34□□□□□ -0.11
CCDC40-204ENST00000397545 WDR43Q15061 677 aaKnown RBP eCLIP14.34□□□□□ -0.11
CCDC40-204ENST00000397545 FOXD1Q16676 465 aa14.34□□□□□ -0.11
CCDC40-204ENST00000397545 GRIN2BQ13224 1484 aa14.34□□□□□ -0.11
CCDC40-204ENST00000397545 CCDC18Q5T9S5 1454 aa14.33□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms