RNA–Protein interactions for RNA: ENST00000397545.8

CCDC40-204, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS P3 TSL 5 BASIC

Gene CCDC40, Length 4,294 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-204ENST00000397545 NISCHQ9Y2I1 1504 aa20.8■□□□□ 0.92
CCDC40-204ENST00000397545 DCAF8L2P0C7V8 631 aa18.79■□□□□ 0.6
CCDC40-204ENST00000397545 SHROOM4Q9ULL8 1493 aa18.15■□□□□ 0.5
CCDC40-204ENST00000397545 SUPT5HO00267 1087 aaKnown RBP18.12■□□□□ 0.49
CCDC40-204ENST00000397545 EHMT2Q96KQ7 1210 aa17.54■□□□□ 0.4
CCDC40-204ENST00000397545 CCDC180Q9P1Z9 1646 aa17.53■□□□□ 0.4
CCDC40-204ENST00000397545 ZCCHC6Q5VYS8 1495 aaKnown RBP17.5■□□□□ 0.39
CCDC40-204ENST00000397545 PCGF6Q9BYE7 350 aa17.23■□□□□ 0.35
CCDC40-204ENST00000397545 FAM9AQ8IZU1 332 aaPredicted RBP17.09■□□□□ 0.33
CCDC40-204ENST00000397545 TTBK1Q5TCY1 1321 aaPredicted RBP16.95■□□□□ 0.3
CCDC40-204ENST00000397545 CHIC1Q5VXU3 224 aa16.94■□□□□ 0.3
CCDC40-204ENST00000397545 ABCC9O60706 1549 aa16.88■□□□□ 0.29
CCDC40-204ENST00000397545 DCAF1Q9Y4B6 1507 aa16.85■□□□□ 0.29
CCDC40-204ENST00000397545 SCRIBQ14160 1630 aa16.76■□□□□ 0.27
CCDC40-204ENST00000397545 MYO15BQ96JP2 1530 aa16.7■□□□□ 0.26
CCDC40-204ENST00000397545 APLP2Q06481 763 aa16.64■□□□□ 0.25
CCDC40-204ENST00000397545 TRIM41Q8WV44 630 aa16.61■□□□□ 0.25
CCDC40-204ENST00000397545 LOC105371045A0A1W2PR82 267 aa16.6■□□□□ 0.25
CCDC40-204ENST00000397545 RANGAP1P46060 587 aaPredicted RBP16.57■□□□□ 0.24
CCDC40-204ENST00000397545 CCER1Q8TC90 406 aaPredicted RBP16.57■□□□□ 0.24
CCDC40-204ENST00000397545 PELP1Q8IZL8 1130 aaKnown RBP16.56■□□□□ 0.24
CCDC40-204ENST00000397545 PPARGC1BQ86YN6 1023 aaKnown RBP16.56■□□□□ 0.24
CCDC40-204ENST00000397545 RSF1Q96T23 1441 aaPredicted RBP16.49■□□□□ 0.23
CCDC40-204ENST00000397545 ZEB1P37275 1124 aaPredicted RBP16.48■□□□□ 0.23
CCDC40-204ENST00000397545 HRCP23327 699 aa16.47■□□□□ 0.23
CCDC40-204ENST00000397545 CENPBP07199 599 aaPredicted RBP16.45■□□□□ 0.22
CCDC40-204ENST00000397545 NACADO15069 1562 aa16.39■□□□□ 0.21
CCDC40-204ENST00000397545 PABPN1Q86U42 306 aaKnown RBP eCLIP16.39■□□□□ 0.21
CCDC40-204ENST00000397545 YTHDC1Q96MU7 727 aaKnown RBP16.38■□□□□ 0.21
CCDC40-204ENST00000397545 CECR2Q9BXF3 1484 aa16.37■□□□□ 0.21
CCDC40-204ENST00000397545 UBTFP17480 764 aaKnown RBP16.32■□□□□ 0.2
CCDC40-204ENST00000397545 TRIM26Q12899 539 aaPredicted RBP16.31■□□□□ 0.2
CCDC40-204ENST00000397545 RB1CC1Q8TDY2 1594 aa16.27■□□□□ 0.19
CCDC40-204ENST00000397545 MROH2BQ7Z745 1585 aa16.23■□□□□ 0.19
CCDC40-204ENST00000397545 ATP1B4Q9UN42 357 aaPredicted RBP16.17■□□□□ 0.18
CCDC40-204ENST00000397545 WIZO95785 1651 aa16.11■□□□□ 0.17
CCDC40-204ENST00000397545 ERICH6Q7L0X2 663 aa16.02■□□□□ 0.15
CCDC40-204ENST00000397545 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.99■□□□□ 0.15
CCDC40-204ENST00000397545 BAZ1AQ9NRL2 1556 aaPredicted RBP15.99■□□□□ 0.15
CCDC40-204ENST00000397545 HNRNPUL2Q1KMD3 747 aaKnown RBP15.97■□□□□ 0.15
CCDC40-204ENST00000397545 ITGAEP38570 1179 aa15.94■□□□□ 0.14
CCDC40-204ENST00000397545 NEFLP07196 543 aa15.91■□□□□ 0.14
CCDC40-204ENST00000397545 CCDC88BA6NC98 1476 aa15.84■□□□□ 0.13
CCDC40-204ENST00000397545 SMARCA4P51532 1647 aa15.84■□□□□ 0.13
CCDC40-204ENST00000397545 DIEXFQ68CQ4 756 aaKnown RBP15.82■□□□□ 0.12
CCDC40-204ENST00000397545 ABCC8Q09428 1581 aa15.81■□□□□ 0.12
CCDC40-204ENST00000397545 TOP2AP11388 1531 aaKnown RBP15.79■□□□□ 0.12
CCDC40-204ENST00000397545 UNC13AQ9UPW8 1703 aa15.78■□□□□ 0.12
CCDC40-204ENST00000397545 MYT1Q01538 1121 aa15.75■□□□□ 0.11
CCDC40-204ENST00000397545 SMARCA2P51531 1590 aa15.7■□□□□ 0.1
CCDC40-204ENST00000397545 CNGB1Q14028 1251 aaPredicted RBP15.69■□□□□ 0.1
CCDC40-204ENST00000397545 BICRAQ9NZM4 1560 aa15.69■□□□□ 0.1
CCDC40-204ENST00000397545 SOGA1O94964 1423 aa15.68■□□□□ 0.1
CCDC40-204ENST00000397545 GTF3C3Q9Y5Q9 886 aa15.67■□□□□ 0.1
CCDC40-204ENST00000397545 CSRNP3Q8WYN3 585 aa15.66■□□□□ 0.1
CCDC40-204ENST00000397545 POLR3GLQ9BT43 218 aa15.63■□□□□ 0.09
CCDC40-204ENST00000397545 BAZ1BQ9UIG0 1483 aaKnown RBP15.6■□□□□ 0.09
CCDC40-204ENST00000397545 RUSC2Q8N2Y8 1516 aa15.58■□□□□ 0.09
CCDC40-204ENST00000397545 WRNQ14191 1432 aaPredicted RBP eCLIP15.58■□□□□ 0.08
CCDC40-204ENST00000397545 EIF4G1Q04637 1599 aaKnown RBP15.57■□□□□ 0.08
CCDC40-204ENST00000397545 ATAD2BQ9ULI0 1458 aa15.56■□□□□ 0.08
CCDC40-204ENST00000397545 CEP162Q5TB80 1403 aa15.52■□□□□ 0.08
CCDC40-204ENST00000397545 BCANQ96GW7 911 aa15.5■□□□□ 0.07
CCDC40-204ENST00000397545 TNIKQ9UKE5 1360 aa15.44■□□□□ 0.06
CCDC40-204ENST00000397545 ACIN1Q9UKV3 1341 aaKnown RBP15.43■□□□□ 0.06
CCDC40-204ENST00000397545 NEUROD1Q13562 356 aa15.42■□□□□ 0.06
CCDC40-204ENST00000397545 EEA1Q15075 1411 aa15.42■□□□□ 0.06
CCDC40-204ENST00000397545 GOLGA3Q08378 1498 aa15.4■□□□□ 0.06
CCDC40-204ENST00000397545 FAM50AQ14320 339 aaKnown RBP15.4■□□□□ 0.06
CCDC40-204ENST00000397545 ZNF316A6NFI3 1004 aaPredicted RBP15.39■□□□□ 0.05
CCDC40-204ENST00000397545 SYNJ1O43426 1573 aa15.37■□□□□ 0.05
CCDC40-204ENST00000397545 PEG3Q9GZU2 1588 aa15.37■□□□□ 0.05
CCDC40-204ENST00000397545 FBLN2P98095 1184 aa15.37■□□□□ 0.05
CCDC40-204ENST00000397545 CLIP1P30622 1438 aa15.31■□□□□ 0.04
CCDC40-204ENST00000397545 CEP164Q9UPV0 1460 aa15.31■□□□□ 0.04
CCDC40-204ENST00000397545 DAXXQ9UER7 740 aaPredicted RBP15.27■□□□□ 0.04
CCDC40-204ENST00000397545 RAPGEF2Q9Y4G8 1499 aa15.26■□□□□ 0.03
CCDC40-204ENST00000397545 TRIM52Q96A61 297 aa15.22■□□□□ 0.03
CCDC40-204ENST00000397545 NCAPD3P42695 1498 aa15.22■□□□□ 0.03
CCDC40-204ENST00000397545 SCAF1Q9H7N4 1312 aaKnown RBP15.22■□□□□ 0.03
CCDC40-204ENST00000397545 MYT1LQ9UL68 1186 aa15.21■□□□□ 0.03
CCDC40-204ENST00000397545 ANP32CO43423 234 aa15.16■□□□□ 0.02
CCDC40-204ENST00000397545 P3H3Q8IVL6 736 aa15.15■□□□□ 0.02
CCDC40-204ENST00000397545 ZNF326Q5BKZ1 582 aaKnown RBP15.14■□□□□ 0.01
CCDC40-204ENST00000397545 RTL5Q5HYW3 569 aaPredicted RBP15.13■□□□□ 0.01
CCDC40-204ENST00000397545 KIF27Q86VH2 1401 aa15.12■□□□□ 0.01
CCDC40-204ENST00000397545 VPS8Q8N3P4 1428 aa15.12■□□□□ 0.01
CCDC40-204ENST00000397545 TOP2BQ02880 1626 aa15.12■□□□□ 0.01
CCDC40-204ENST00000397545 HMGXB3Q12766 1538 aa15.12■□□□□ 0.01
CCDC40-204ENST00000397545 ARID3CA6NKF2 412 aa15.12■□□□□ 0.01
CCDC40-204ENST00000397545 KIF21BO75037 1637 aa15.11■□□□□ 0.01
CCDC40-204ENST00000397545 CUX1P39880 1505 aa15.1■□□□□ 0.01
CCDC40-204ENST00000397545 CFTRP13569 1480 aa15.08■□□□□ 0
CCDC40-204ENST00000397545 SLC4A1APQ9BWU0 796 aaKnown RBP15.07■□□□□ 0
CCDC40-204ENST00000397545 CLSPNQ9HAW4 1339 aa15.07■□□□□ 0
CCDC40-204ENST00000397545 CDK11AQ9UQ88 783 aaPredicted RBP15.06■□□□□ 0
CCDC40-204ENST00000397545 CADPSQ9ULU8 1353 aa15.06■□□□□ 0
CCDC40-204ENST00000397545 CUX2O14529 1486 aa15.06■□□□□ 0
CCDC40-204ENST00000397545 KANK4Q5T7N3 995 aaPredicted RBP15.05■□□□□ -0
CCDC40-204ENST00000397545 FKBP8Q14318 412 aa15.03■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms